data_8TQS # _model_server_result.job_id PXjW1QVsC5_kMbibDo_DHw _model_server_result.datetime_utc '2024-11-25 11:36:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 8TQS # _exptl.entry_id 8TQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.511 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2-{[(4-carbamimidoylphenyl)amino]methyl}-1-methyl-1H-benzimidazol-5-yl)carbonyl]-N-pyridin-2-yl-beta-alanine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TQS _cell.length_a 81.626 _cell.length_b 81.626 _cell.length_c 190.514 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? disulf ? disulf2 B SG CYS 119 H CYS 122 1_555 C SG CYS 17 L CYS 1 1_555 ? ? ? P ? ? ? ? ? ? ? ? 2.349 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc1 A O6 DG 9 D DG 15 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc2 A O6 DG 10 D DG 16 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc3 A O6 DG 13 D DG 19 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A O6 DG 19 D DG 25 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 A O6 DG 22 D DG 28 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc6 B O ARG 233 H ARG 221 1_555 E NA NA . H NA 301 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc7 B O LYS 236 H LYS 224 1_555 E NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 E NA NA . H NA 301 1_555 I O HOH . H HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc9 E NA NA . H NA 301 1_555 I O HOH . H HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? hydrog 'DA-DT PAIR' hydrog1 A N6 DA 2 D DA 8 1_555 A O2 DT 30 D DT 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 3 D DG 9 1_555 A N3 DC 29 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 3 D DG 9 1_555 A O2 DC 29 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 3 D DG 9 1_555 A N4 DC 29 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DT 4 D DT 10 1_555 A N1 DA 28 D DA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O4 DT 4 D DT 10 1_555 A N6 DA 28 D DA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 5 D DC 11 1_555 A N1 DG 27 D DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 5 D DC 11 1_555 A O6 DG 27 D DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 5 D DC 11 1_555 A N2 DG 27 D DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 6 D DC 12 1_555 A N1 DG 25 D DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 6 D DC 12 1_555 A O6 DG 25 D DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 6 D DC 12 1_555 A N2 DG 25 D DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog13 A N2 DG 7 D DG 13 1_555 A O6 DG 9 D DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog14 A N1 DG 7 D DG 13 1_555 A N7 DG 18 D DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog15 A N2 DG 7 D DG 13 1_555 A O6 DG 18 D DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog16 A N3 DT 8 D DT 14 1_555 A N7 DA 17 D DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog17 A O2 DT 8 D DT 14 1_555 A N6 DA 17 D DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog18 A N7 DG 9 D DG 15 1_555 A N1 DG 14 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog19 A O6 DG 9 D DG 15 1_555 A N2 DG 14 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N7 DG 10 D DG 16 1_555 A N2 DG 13 D DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 A O6 DG 10 D DG 16 1_555 A N1 DG 13 D DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N1 DG 10 D DG 16 1_555 A O6 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 A N2 DG 10 D DG 16 1_555 A N7 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog24 A N1 DA 12 D DA 18 1_555 A N3 DT 21 D DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog25 A N6 DA 12 D DA 18 1_555 A O2 DT 21 D DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 A N7 DG 13 D DG 19 1_555 A N2 DG 19 D DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 A O6 DG 13 D DG 19 1_555 A N1 DG 19 D DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog28 A N2 DG 14 D DG 20 1_555 A O6 DG 18 D DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 A N7 DG 19 D DG 25 1_555 A N2 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog30 A O6 DG 19 D DG 25 1_555 A N1 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C25 H25 N7 O3' _chem_comp.formula_weight 471.511 _chem_comp.id 4CC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2-{[(4-carbamimidoylphenyl)amino]methyl}-1-methyl-1H-benzimidazol-5-yl)carbonyl]-N-pyridin-2-yl-beta-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C28 4CC doub 1 n n O32 C28 4CC sing 2 n n C28 C23 4CC sing 3 n n C23 C18 4CC sing 4 n n C18 N14 4CC sing 5 n n C21 C26 4CC doub 6 n y C21 C17 4CC sing 7 n y C26 C30 4CC sing 8 n y O15 C12 4CC doub 9 n n N14 C17 4CC sing 10 n n N14 C12 4CC sing 11 n n C17 N22 4CC doub 12 n y C12 C10 4CC sing 13 n n C30 C27 4CC doub 14 n y N22 C27 4CC sing 15 n y C5 C10 4CC doub 16 n y C5 C2 4CC sing 17 n y C10 C9 4CC sing 18 n y C2 N6 4CC sing 19 n y C2 C1 4CC doub 20 n y C9 C4 4CC doub 21 n y N6 C7 4CC doub 22 n y C20 C25 4CC doub 23 n y C20 C16 4CC sing 24 n y C25 C29 4CC sing 25 n y C1 C4 4CC sing 26 n y C1 N3 4CC sing 27 n y N13 C16 4CC sing 28 n n N13 C11 4CC sing 29 n n C16 C19 4CC doub 30 n y C7 N3 4CC sing 31 n y C7 C11 4CC sing 32 n n N35 C33 4CC doub 33 n n C29 C33 4CC sing 34 n n C29 C24 4CC doub 35 n y C33 N34 4CC sing 36 n n N3 C8 4CC sing 37 n n C19 C24 4CC sing 38 n y C4 H1 4CC sing 39 n n C5 H2 4CC sing 40 n n C8 H3 4CC sing 41 n n C8 H4 4CC sing 42 n n C8 H5 4CC sing 43 n n C20 H6 4CC sing 44 n n C21 H7 4CC sing 45 n n C24 H8 4CC sing 46 n n C26 H9 4CC sing 47 n n C9 H10 4CC sing 48 n n C11 H11 4CC sing 49 n n C11 H12 4CC sing 50 n n N13 H13 4CC sing 51 n n C18 H14 4CC sing 52 n n C18 H15 4CC sing 53 n n C19 H16 4CC sing 54 n n C23 H17 4CC sing 55 n n C23 H18 4CC sing 56 n n C25 H19 4CC sing 57 n n C27 H20 4CC sing 58 n n C30 H21 4CC sing 59 n n O32 H22 4CC sing 60 n n N34 H23 4CC sing 61 n n N34 H24 4CC sing 62 n n N35 H25 4CC sing 63 n n # _atom_sites.entry_id 8TQS _atom_sites.fract_transf_matrix[1][1] 0.012251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG D 1 101 4 MG MG . E 5 NA H 1 301 1 NA NA . F 6 MES H 1 302 2 MES MES . G 7 4CC H 1 303 3 4CC 4CC . H 8 NAG H 1 304 5 NAG NAG . I 9 HOH H 1 401 9 HOH HOH . I 9 HOH H 2 402 25 HOH HOH . I 9 HOH H 3 403 23 HOH HOH . I 9 HOH H 4 404 27 HOH HOH . I 9 HOH H 5 405 7 HOH HOH . I 9 HOH H 6 406 16 HOH HOH . I 9 HOH H 7 407 6 HOH HOH . J 9 HOH L 1 101 5 HOH HOH . J 9 HOH L 2 102 11 HOH HOH . J 9 HOH L 3 103 2 HOH HOH . J 9 HOH L 4 104 8 HOH HOH . J 9 HOH L 5 105 13 HOH HOH . J 9 HOH L 6 106 21 HOH HOH . J 9 HOH L 7 107 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 4CC . . . G 7 0.842 20.197 18.076 1 122.14 0 N3 4CC 303 H 1 HETATM 2 C C4 4CC . . . G 7 3.166 19.392 17.709 1 121.04 0 C4 4CC 303 H 1 HETATM 3 C C5 4CC . . . G 7 3.471 20.057 20.352 1 88.1 0 C5 4CC 303 H 1 HETATM 4 C C7 4CC . . . G 7 0.149 20.701 19.128 1 79.43 0 C7 4CC 303 H 1 HETATM 5 C C8 4CC . . . G 7 0.433 19.952 16.685 1 146.39 0 C8 4CC 303 H 1 HETATM 6 C C10 4CC . . . G 7 4.558 19.528 19.607 1 100.69 0 C10 4CC 303 H 1 HETATM 7 C C17 4CC . . . G 7 6.921 17.759 19.634 1 116.52 0 C17 4CC 303 H 1 HETATM 8 C C20 4CC . . . G 7 -2.83 18.49 18.515 1 88.71 0 C20 4CC 303 H 1 HETATM 9 C C21 4CC . . . G 7 6.527 16.659 18.89 1 123.92 0 C21 4CC 303 H 1 HETATM 10 C C24 4CC . . . G 7 -2.55 18.438 15.767 1 81.25 0 C24 4CC 303 H 1 HETATM 11 C C26 4CC . . . G 7 7.259 16.281 17.805 1 124.42 0 C26 4CC 303 H 1 HETATM 12 C C28 4CC . . . G 7 5.849 16.69 22.515 1 104.19 0 C28 4CC 303 H 1 HETATM 13 C C1 4CC . . . G 7 2.084 19.923 18.456 1 88.44 0 C1 4CC 303 H 1 HETATM 14 C C2 4CC . . . G 7 2.206 20.27 19.75 1 77.89 0 C2 4CC 303 H 1 HETATM 15 N N6 4CC . . . G 7 1.009 20.76 20.178 1 73.88 0 N6 4CC 303 H 1 HETATM 16 C C9 4CC . . . G 7 4.392 19.183 18.292 1 100.03 0 C9 4CC 303 H 1 HETATM 17 C C11 4CC . . . G 7 -1.276 21.245 19.509 1 80.62 0 C11 4CC 303 H 1 HETATM 18 C C12 4CC . . . G 7 5.504 19.539 20.841 1 139.84 0 C12 4CC 303 H 1 HETATM 19 N N13 4CC . . . G 7 -2.297 21.021 18.429 1 88.83 0 N13 4CC 303 H 1 HETATM 20 N N14 4CC . . . G 7 6.652 18.624 20.801 1 117.1 0 N14 4CC 303 H 1 HETATM 21 O O15 4CC . . . G 7 5.31 20.196 21.805 1 220.65 0 O15 4CC 303 H 1 HETATM 22 C C16 4CC . . . G 7 -2.527 19.664 17.866 1 88.72 0 C16 4CC 303 H 1 HETATM 23 C C18 4CC . . . G 7 7.527 18.55 21.974 1 104.97 0 C18 4CC 303 H 1 HETATM 24 C C19 4CC . . . G 7 -2.4 19.637 16.478 1 89.14 0 C19 4CC 303 H 1 HETATM 25 N N22 4CC . . . G 7 8.037 18.444 19.258 1 131.64 0 N22 4CC 303 H 1 HETATM 26 C C23 4CC . . . G 7 6.748 17.814 23.084 1 95.29 0 C23 4CC 303 H 1 HETATM 27 C C25 4CC . . . G 7 -2.989 17.305 17.822 1 81.87 0 C25 4CC 303 H 1 HETATM 28 C C27 4CC . . . G 7 8.773 18.065 18.179 1 108.96 0 C27 4CC 303 H 1 HETATM 29 C C29 4CC . . . G 7 -2.855 17.265 16.451 1 82.12 0 C29 4CC 303 H 1 HETATM 30 C C30 4CC . . . G 7 8.377 16.963 17.437 1 116.33 0 C30 4CC 303 H 1 HETATM 31 O O31 4CC . . . G 7 6.054 15.499 22.836 1 113.97 0 O31 4CC 303 H 1 HETATM 32 O O32 4CC . . . G 7 4.893 16.919 21.721 1 96.01 0 O32 4CC 303 H 1 HETATM 33 C C33 4CC . . . G 7 -2.972 16.106 15.457 1 76.63 0 C33 4CC 303 H 1 HETATM 34 N N34 4CC . . . G 7 -2.108 15.975 14.293 1 82.82 0 N34 4CC 303 H 1 HETATM 35 N N35 4CC . . . G 7 -3.809 15.218 15.698 1 73.27 0 N35 4CC 303 H 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #