data_8TQS # _model_server_result.job_id VoBkJqUF2KjGHKuhk0xolQ _model_server_result.datetime_utc '2024-11-29 03:11:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":304}' # _entry.id 8TQS # _exptl.entry_id 8TQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TQS _cell.length_a 81.626 _cell.length_b 81.626 _cell.length_c 190.514 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? disulf ? disulf2 B SG CYS 119 H CYS 122 1_555 C SG CYS 17 L CYS 1 1_555 ? ? ? P ? ? ? ? ? ? ? ? 2.349 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc1 A O6 DG 9 D DG 15 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc2 A O6 DG 10 D DG 16 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc3 A O6 DG 13 D DG 19 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A O6 DG 19 D DG 25 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 A O6 DG 22 D DG 28 1_555 D MG MG . D MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc6 B O ARG 233 H ARG 221 1_555 E NA NA . H NA 301 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc7 B O LYS 236 H LYS 224 1_555 E NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 E NA NA . H NA 301 1_555 I O HOH . H HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc9 E NA NA . H NA 301 1_555 I O HOH . H HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? hydrog 'DA-DT PAIR' hydrog1 A N6 DA 2 D DA 8 1_555 A O2 DT 30 D DT 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 3 D DG 9 1_555 A N3 DC 29 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 3 D DG 9 1_555 A O2 DC 29 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 3 D DG 9 1_555 A N4 DC 29 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DT 4 D DT 10 1_555 A N1 DA 28 D DA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O4 DT 4 D DT 10 1_555 A N6 DA 28 D DA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 5 D DC 11 1_555 A N1 DG 27 D DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 5 D DC 11 1_555 A O6 DG 27 D DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 5 D DC 11 1_555 A N2 DG 27 D DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 6 D DC 12 1_555 A N1 DG 25 D DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 6 D DC 12 1_555 A O6 DG 25 D DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 6 D DC 12 1_555 A N2 DG 25 D DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog13 A N2 DG 7 D DG 13 1_555 A O6 DG 9 D DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog14 A N1 DG 7 D DG 13 1_555 A N7 DG 18 D DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog15 A N2 DG 7 D DG 13 1_555 A O6 DG 18 D DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog16 A N3 DT 8 D DT 14 1_555 A N7 DA 17 D DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog17 A O2 DT 8 D DT 14 1_555 A N6 DA 17 D DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog18 A N7 DG 9 D DG 15 1_555 A N1 DG 14 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog19 A O6 DG 9 D DG 15 1_555 A N2 DG 14 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N7 DG 10 D DG 16 1_555 A N2 DG 13 D DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 A O6 DG 10 D DG 16 1_555 A N1 DG 13 D DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N1 DG 10 D DG 16 1_555 A O6 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 A N2 DG 10 D DG 16 1_555 A N7 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog24 A N1 DA 12 D DA 18 1_555 A N3 DT 21 D DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog25 A N6 DA 12 D DA 18 1_555 A O2 DT 21 D DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 A N7 DG 13 D DG 19 1_555 A N2 DG 19 D DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 A O6 DG 13 D DG 19 1_555 A N1 DG 19 D DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog28 A N2 DG 14 D DG 20 1_555 A O6 DG 18 D DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 A N7 DG 19 D DG 25 1_555 A N2 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog30 A O6 DG 19 D DG 25 1_555 A N1 DG 22 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 474 n n C1 O1 NAG sing 475 n n C1 O5 NAG sing 476 n n C1 H1 NAG sing 477 n n C2 C3 NAG sing 478 n n C2 N2 NAG sing 479 n n C2 H2 NAG sing 480 n n C3 C4 NAG sing 481 n n C3 O3 NAG sing 482 n n C3 H3 NAG sing 483 n n C4 C5 NAG sing 484 n n C4 O4 NAG sing 485 n n C4 H4 NAG sing 486 n n C5 C6 NAG sing 487 n n C5 O5 NAG sing 488 n n C5 H5 NAG sing 489 n n C6 O6 NAG sing 490 n n C6 H61 NAG sing 491 n n C6 H62 NAG sing 492 n n C7 C8 NAG sing 493 n n C7 N2 NAG sing 494 n n C7 O7 NAG doub 495 n n C8 H81 NAG sing 496 n n C8 H82 NAG sing 497 n n C8 H83 NAG sing 498 n n N2 HN2 NAG sing 499 n n O1 HO1 NAG sing 500 n n O3 HO3 NAG sing 501 n n O4 HO4 NAG sing 502 n n O6 HO6 NAG sing 503 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8TQS _atom_sites.fract_transf_matrix[1][1] 0.012251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG D 1 101 4 MG MG . E 5 NA H 1 301 1 NA NA . F 6 MES H 1 302 2 MES MES . G 7 4CC H 1 303 3 4CC 4CC . H 8 NAG H 1 304 5 NAG NAG . I 9 HOH H 1 401 9 HOH HOH . I 9 HOH H 2 402 25 HOH HOH . I 9 HOH H 3 403 23 HOH HOH . I 9 HOH H 4 404 27 HOH HOH . I 9 HOH H 5 405 7 HOH HOH . I 9 HOH H 6 406 16 HOH HOH . I 9 HOH H 7 407 6 HOH HOH . J 9 HOH L 1 101 5 HOH HOH . J 9 HOH L 2 102 11 HOH HOH . J 9 HOH L 3 103 2 HOH HOH . J 9 HOH L 4 104 8 HOH HOH . J 9 HOH L 5 105 13 HOH HOH . J 9 HOH L 6 106 21 HOH HOH . J 9 HOH L 7 107 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 8 1.778 32.71 34.067 1 117.05 0 C1 NAG 304 H 1 HETATM 2 C C2 NAG . . . H 8 2.842 32.012 34.916 1 136.49 0 C2 NAG 304 H 1 HETATM 3 C C3 NAG . . . H 8 2.322 31.74 36.327 1 164.09 0 C3 NAG 304 H 1 HETATM 4 C C4 NAG . . . H 8 1.642 32.974 36.909 1 167.16 0 C4 NAG 304 H 1 HETATM 5 C C5 NAG . . . H 8 0.515 33.409 35.978 1 155.08 0 C5 NAG 304 H 1 HETATM 6 C C6 NAG . . . H 8 -0.266 34.605 36.485 1 142.53 0 C6 NAG 304 H 1 HETATM 7 C C7 NAG . . . H 8 4.131 30.795 33.219 1 116.11 0 C7 NAG 304 H 1 HETATM 8 C C8 NAG . . . H 8 4.999 29.582 33.065 1 101.62 0 C8 NAG 304 H 1 HETATM 9 N N2 NAG . . . H 8 3.302 30.799 34.268 1 127.16 0 N2 NAG 304 H 1 HETATM 10 O O3 NAG . . . H 8 3.401 31.325 37.154 1 161.92 0 O3 NAG 304 H 1 HETATM 11 O O4 NAG . . . H 8 1.119 32.671 38.2 1 153.92 0 O4 NAG 304 H 1 HETATM 12 O O5 NAG . . . H 8 1.088 33.774 34.705 1 132.77 0 O5 NAG 304 H 1 HETATM 13 O O6 NAG . . . H 8 0.527 35.79 36.512 1 140.39 0 O6 NAG 304 H 1 HETATM 14 O O7 NAG . . . H 8 4.18 31.732 32.427 1 104.89 0 O7 NAG 304 H 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1170 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #