data_8TQT # _model_server_result.job_id ARZ2PD63f5GB1BiwAABq0w _model_server_result.datetime_utc '2024-10-13 18:19:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8TQT # _exptl.entry_id 8TQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.062 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3-chlorophenyl)methyl [(2S)-3-cyclohexyl-1-({(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.198 _cell.angle_gamma 90 _cell.entry_id 8TQT _cell.length_a 54.34 _cell.length_b 80.76 _cell.length_c 86.144 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -54.34 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id K2X _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id K2X _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.818 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H34 Cl N3 O5 S' _chem_comp.formula_weight 512.062 _chem_comp.id K2X _chem_comp.mon_nstd_flag . _chem_comp.name '(3-chlorophenyl)methyl [(2S)-3-cyclohexyl-1-({(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C6 K2X sing 171 n n C6 C5 K2X doub 172 n y C6 C7 K2X sing 173 n y C5 C4 K2X sing 174 n y C7 C2 K2X doub 175 n y C4 C3 K2X doub 176 n y C16 C18 K2X sing 177 n n C16 C13 K2X sing 178 n n C18 C23 K2X sing 179 n n C2 C3 K2X sing 180 n y C2 C1 K2X sing 181 n n O11 C1 K2X sing 182 n n O11 C12 K2X sing 183 n n O38 C15 K2X doub 184 n n C34 C13 K2X sing 185 n n C34 C14 K2X sing 186 n n C13 C26 K2X sing 187 n n N13 C12 K2X sing 188 n n N13 C14 K2X sing 189 n n C12 O33 K2X doub 190 n n C15 C14 K2X sing 191 n n C15 N16 K2X sing 192 n n C23 C25 K2X sing 193 n n C21 C22 K2X sing 194 n n C21 C20 K2X sing 195 n n C22 N23 K2X sing 196 n n C26 C25 K2X sing 197 n n N16 C17 K2X sing 198 n n C17 C8 K2X sing 199 n n C17 C19 K2X sing 200 n n O9 C8 K2X sing 201 n n C20 C19 K2X sing 202 n n C20 C24 K2X sing 203 n n N23 C24 K2X sing 204 n n C24 O26 K2X doub 205 n n C8 S1 K2X sing 206 n n C1 H1 K2X sing 207 n n C1 H2 K2X sing 208 n n C13 H3 K2X sing 209 n n C14 H4 K2X sing 210 n n C16 H5 K2X sing 211 n n C16 H6 K2X sing 212 n n C17 H7 K2X sing 213 n n C18 H8 K2X sing 214 n n C18 H9 K2X sing 215 n n C19 H10 K2X sing 216 n n C19 H11 K2X sing 217 n n C20 H12 K2X sing 218 n n C21 H13 K2X sing 219 n n C21 H14 K2X sing 220 n n C22 H15 K2X sing 221 n n C22 H16 K2X sing 222 n n C23 H17 K2X sing 223 n n C23 H18 K2X sing 224 n n C25 H19 K2X sing 225 n n C25 H20 K2X sing 226 n n C26 H21 K2X sing 227 n n C26 H22 K2X sing 228 n n C3 H23 K2X sing 229 n n C34 H24 K2X sing 230 n n C34 H25 K2X sing 231 n n C4 H26 K2X sing 232 n n C5 H27 K2X sing 233 n n C7 H28 K2X sing 234 n n C8 H29 K2X sing 235 n n N13 H30 K2X sing 236 n n N16 H31 K2X sing 237 n n N23 H32 K2X sing 238 n n O9 H33 K2X sing 239 n n S1 H34 K2X sing 240 n n # _atom_sites.entry_id 8TQT _atom_sites.fract_transf_matrix[1][1] 0.018403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002324 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id K2X _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id K2X _pdbx_nonpoly_scheme.auth_mon_id i43 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K2X . . . B 2 -11.003 -19.239 -18.251 1 35.73 ? C1 K2X 401 A 1 HETATM 2 C C12 K2X . . . B 2 -10.279 -16.894 -17.706 1 36.08 ? C12 K2X 401 A 1 HETATM 3 C C13 K2X . . . B 2 -7.5 -13.74 -18.156 1 41.55 ? C13 K2X 401 A 1 HETATM 4 C C14 K2X . . . B 2 -9.838 -14.509 -17.468 1 34.62 ? C14 K2X 401 A 1 HETATM 5 C C15 K2X . . . B 2 -11.295 -14.098 -17.501 1 33.14 ? C15 K2X 401 A 1 HETATM 6 C C16 K2X . . . B 2 -6.772 -12.623 -18.901 1 47.58 ? C16 K2X 401 A 1 HETATM 7 C C17 K2X . . . B 2 -13.218 -13.043 -16.406 1 31.24 ? C17 K2X 401 A 1 HETATM 8 C C18 K2X . . . B 2 -5.257 -12.82 -18.893 1 51.32 ? C18 K2X 401 A 1 HETATM 9 C C19 K2X . . . B 2 -14.061 -13.872 -15.432 1 31.18 ? C19 K2X 401 A 1 HETATM 10 C C2 K2X . . . B 2 -12.396 -19.121 -18.842 1 40.06 ? C2 K2X 401 A 1 HETATM 11 C C20 K2X . . . B 2 -14.084 -15.337 -15.855 1 30.08 ? C20 K2X 401 A 1 HETATM 12 C C21 K2X . . . B 2 -14.841 -15.533 -17.168 1 33.97 ? C21 K2X 401 A 1 HETATM 13 C C22 K2X . . . B 2 -15.692 -16.791 -16.98 1 33.39 ? C22 K2X 401 A 1 HETATM 14 C C23 K2X . . . B 2 -4.742 -12.904 -17.462 1 42.97 ? C23 K2X 401 A 1 HETATM 15 C C24 K2X . . . B 2 -14.86 -16.204 -14.901 1 28.43 ? C24 K2X 401 A 1 HETATM 16 C C25 K2X . . . B 2 -5.469 -13.997 -16.689 1 40.59 ? C25 K2X 401 A 1 HETATM 17 C C26 K2X . . . B 2 -6.983 -13.796 -16.721 1 37.85 ? C26 K2X 401 A 1 HETATM 18 C C3 K2X . . . B 2 -13.308 -20.169 -18.712 1 43.19 ? C3 K2X 401 A 1 HETATM 19 C C34 K2X . . . B 2 -9 -13.444 -18.174 1 36.27 ? C34 K2X 401 A 1 HETATM 20 C C4 K2X . . . B 2 -14.585 -20.066 -19.258 1 44.08 ? C4 K2X 401 A 1 HETATM 21 C C5 K2X . . . B 2 -14.958 -18.911 -19.936 1 45.22 ? C5 K2X 401 A 1 HETATM 22 C C6 K2X . . . B 2 -14.049 -17.864 -20.07 1 43.67 ? C6 K2X 401 A 1 HETATM 23 C C7 K2X . . . B 2 -12.774 -17.972 -19.524 1 42.06 ? C7 K2X 401 A 1 HETATM 24 C C8 K2X . . . B 2 -13.223 -11.549 -16.035 1 32.35 ? C8 K2X 401 A 1 HETATM 25 N N13 K2X . . . B 2 -9.637 -15.796 -18.12 1 38.79 ? N13 K2X 401 A 1 HETATM 26 N N16 K2X . . . B 2 -11.842 -13.555 -16.408 1 31.93 ? N16 K2X 401 A 1 HETATM 27 N N23 K2X . . . B 2 -15.679 -17.025 -15.548 1 30.68 ? N23 K2X 401 A 1 HETATM 28 O O11 K2X . . . B 2 -10.229 -18.077 -18.547 1 37.43 ? O11 K2X 401 A 1 HETATM 29 O O26 K2X . . . B 2 -14.727 -16.15 -13.693 1 28.44 ? O26 K2X 401 A 1 HETATM 30 O O33 K2X . . . B 2 -10.897 -16.949 -16.656 1 33.63 ? O33 K2X 401 A 1 HETATM 31 O O38 K2X . . . B 2 -11.946 -14.271 -18.515 1 34.73 ? O38 K2X 401 A 1 HETATM 32 O O9 K2X . . . B 2 -14.544 -10.972 -16.142 1 32.32 ? O9 K2X 401 A 1 HETATM 33 CL CL1 K2X . . . B 2 -14.514 -16.36 -20.938 1 73.63 ? CL1 K2X 401 A 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #