data_8TR0
#
_model_server_result.job_id            kEmBSKR2kPjN5TcsTWKXJg 
_model_server_result.datetime_utc      '2024-11-21 14:11:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tr0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    8TR0 
#
_exptl.entry_id    8TR0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              353.369 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 240 A CYS 240 1_555 A SG CYS 527 A CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 361 A CYS 361 1_555 A SG CYS 373 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 412 A CYS 412 1_555 A SG CYS 419 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 509 A CYS 509 1_555 A SG CYS 528 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 513 A CYS 513 1_555 A SG CYS 531 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 534 A CYS 534 1_555 A SG CYS 546 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 A SG CYS 549 A CYS 549 1_555 A SG CYS 562 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 B SG CYS 240 B CYS 240 1_555 B SG CYS 527 B CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf9 B SG CYS 361 B CYS 361 1_555 B SG CYS 373 B CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 412 B CYS 412 1_555 B SG CYS 419 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 B SG CYS 509 B CYS 509 1_555 B SG CYS 528 B CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 B SG CYS 513 B CYS 513 1_555 B SG CYS 531 B CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 B SG CYS 534 B CYS 534 1_555 B SG CYS 546 B CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf14 B SG CYS 549 B CYS 549 1_555 B SG CYS 562 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C20 H19 N O5' 
_chem_comp.formula_weight    353.369 
_chem_comp.id                Z99 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(1S,2S)-2-[(2S)-2-amino-1-hydroxy-1-oxo-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAA CAY Z99 sing 374 n n 
NAA HNAA Z99 sing 375 n n 
NAA HNAB Z99 sing 376 n n 
OAB CAQ Z99 doub 377 n n 
CAR OAC Z99 sing 378 n n 
OAC HOAC Z99 sing 379 n n 
CAQ OAD Z99 sing 380 n n 
OAD HOAD Z99 sing 381 n n 
OAE CAR Z99 doub 382 n n 
CAH CAF Z99 doub 383 n y 
CAF CAJ Z99 sing 384 n y 
CAF HAF Z99 sing 385 n n 
CAI CAG Z99 doub 386 n y 
CAG CAK Z99 sing 387 n y 
CAG HAG Z99 sing 388 n n 
CAL CAH Z99 sing 389 n y 
CAH HAH Z99 sing 390 n n 
CAM CAI Z99 sing 391 n y 
CAI HAI Z99 sing 392 n n 
CAS CAJ Z99 doub 393 n y 
CAJ HAJ Z99 sing 394 n n 
CAT CAK Z99 doub 395 n y 
CAK HAK Z99 sing 396 n n 
CAL CAU Z99 doub 397 n y 
CAL HAL Z99 sing 398 n n 
CAM CAV Z99 doub 399 n y 
CAM HAM Z99 sing 400 n n 
CAY CAN Z99 sing 401 n n 
CAN CAW Z99 sing 402 n n 
CAN HAN Z99 sing 403 n n 
CAN HANA Z99 sing 404 n n 
CAZ CAO Z99 sing 405 n n 
CAO CAX Z99 sing 406 n n 
CAO HAO Z99 sing 407 n n 
CAO HAOA Z99 sing 408 n n 
CAS OAP Z99 sing 409 n n 
CAT OAP Z99 sing 410 n n 
CAQ CAX Z99 sing 411 n n 
CAY CAR Z99 sing 412 n n 
CAU CAS Z99 sing 413 n y 
CAV CAT Z99 sing 414 n y 
CAW CAU Z99 sing 415 n n 
CAW CAV Z99 sing 416 n n 
CAW HAW Z99 sing 417 n n 
CAZ CAX Z99 sing 418 n n 
CAX HAX Z99 sing 419 n n 
CAZ CAY Z99 sing 420 n n 
CAZ HAZ Z99 sing 421 n n 
#
_atom_sites.entry_id                     8TR0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Z99 A 1 1001 900 Z99 Z99 . 
D 2 Z99 B 1 1001 900 Z99 Z99 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NAA Z99 . . . D 2 170.345 151.125 231.981 1 42.65 ? NAA Z99 1001 B 1 
HETATM 2 O OAB Z99 . . . D 2 167.929 150.257 235.985 1 42.65 ? OAB Z99 1001 B 1 
HETATM 3 O OAC Z99 . . . D 2 168.16 153.416 233.467 1 42.65 ? OAC Z99 1001 B 1 
HETATM 4 O OAD Z99 . . . D 2 169.172 148.459 235.952 1 42.65 ? OAD Z99 1001 B 1 
HETATM 5 O OAE Z99 . . . D 2 169.793 153.867 232.081 1 42.65 ? OAE Z99 1001 B 1 
HETATM 6 C CAF Z99 . . . D 2 164.48 148.862 228.591 1 42.65 ? CAF Z99 1001 B 1 
HETATM 7 C CAG Z99 . . . D 2 165.709 155.656 229.059 1 42.65 ? CAG Z99 1001 B 1 
HETATM 8 C CAH Z99 . . . D 2 165.798 148.556 228.977 1 42.65 ? CAH Z99 1001 B 1 
HETATM 9 C CAI Z99 . . . D 2 167.042 155.422 229.44 1 42.65 ? CAI Z99 1001 B 1 
HETATM 10 C CAJ Z99 . . . D 2 163.913 150.101 228.922 1 42.65 ? CAJ Z99 1001 B 1 
HETATM 11 C CAK Z99 . . . D 2 164.739 154.659 229.245 1 42.65 ? CAK Z99 1001 B 1 
HETATM 12 C CAL Z99 . . . D 2 166.555 149.491 229.695 1 42.65 ? CAL Z99 1001 B 1 
HETATM 13 C CAM Z99 . . . D 2 167.408 154.193 230.011 1 42.65 ? CAM Z99 1001 B 1 
HETATM 14 C CAN Z99 . . . D 2 168.276 151.52 230.725 1 42.65 ? CAN Z99 1001 B 1 
HETATM 15 C CAO Z99 . . . D 2 168.139 149.259 232.856 1 42.65 ? CAO Z99 1001 B 1 
HETATM 16 O OAP Z99 . . . D 2 164.136 152.349 230.016 1 42.65 ? OAP Z99 1001 B 1 
HETATM 17 C CAQ Z99 . . . D 2 168.713 149.481 235.373 1 42.65 ? CAQ Z99 1001 B 1 
HETATM 18 C CAR Z99 . . . D 2 168.975 153.044 232.578 1 42.65 ? CAR Z99 1001 B 1 
HETATM 19 C CAS Z99 . . . D 2 164.684 151.057 229.658 1 42.65 ? CAS Z99 1001 B 1 
HETATM 20 C CAT Z99 . . . D 2 165.11 153.405 229.821 1 42.65 ? CAT Z99 1001 B 1 
HETATM 21 C CAU Z99 . . . D 2 165.97 150.751 230.034 1 42.65 ? CAU Z99 1001 B 1 
HETATM 22 C CAV Z99 . . . D 2 166.418 153.181 230.196 1 42.65 ? CAV Z99 1001 B 1 
HETATM 23 C CAW Z99 . . . D 2 166.75 151.813 230.812 1 42.65 ? CAW Z99 1001 B 1 
HETATM 24 C CAX Z99 . . . D 2 169.112 149.781 233.918 1 42.65 ? CAX Z99 1001 B 1 
HETATM 25 C CAY Z99 . . . D 2 168.965 151.607 232.104 1 42.65 ? CAY Z99 1001 B 1 
HETATM 26 C CAZ Z99 . . . D 2 168.222 150.761 233.147 1 42.65 ? CAZ Z99 1001 B 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           380 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#