data_8TRN # _model_server_result.job_id R63-7WMOvZGW_MWwRrD5cA _model_server_result.datetime_utc '2024-11-05 08:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8trn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8TRN # _exptl.entry_id 8TRN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TRN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 401 1_555 E O1B ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 G MG MG . B MG 401 1_555 H O1B ADP . B ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc3 J MG MG . C MG 401 1_555 K O1B ADP . C ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 96 n n PB O2B ADP sing 97 n n PB O3B ADP sing 98 n n PB O3A ADP sing 99 n n O2B HOB2 ADP sing 100 n n O3B HOB3 ADP sing 101 n n PA O1A ADP doub 102 n n PA O2A ADP sing 103 n n PA O3A ADP sing 104 n n PA O5' ADP sing 105 n n O2A HOA2 ADP sing 106 n n O5' C5' ADP sing 107 n n C5' C4' ADP sing 108 n n C5' "H5'1" ADP sing 109 n n C5' "H5'2" ADP sing 110 n n C4' O4' ADP sing 111 n n C4' C3' ADP sing 112 n n C4' H4' ADP sing 113 n n O4' C1' ADP sing 114 n n C3' O3' ADP sing 115 n n C3' C2' ADP sing 116 n n C3' H3' ADP sing 117 n n O3' HO3' ADP sing 118 n n C2' O2' ADP sing 119 n n C2' C1' ADP sing 120 n n C2' H2' ADP sing 121 n n O2' HO2' ADP sing 122 n n C1' N9 ADP sing 123 n n C1' H1' ADP sing 124 n n N9 C8 ADP sing 125 n y N9 C4 ADP sing 126 n y C8 N7 ADP doub 127 n y C8 H8 ADP sing 128 n n N7 C5 ADP sing 129 n y C5 C6 ADP sing 130 n y C5 C4 ADP doub 131 n y C6 N6 ADP sing 132 n n C6 N1 ADP doub 133 n y N6 HN61 ADP sing 134 n n N6 HN62 ADP sing 135 n n N1 C2 ADP sing 136 n y C2 N3 ADP doub 137 n y C2 H2 ADP sing 138 n n N3 C4 ADP sing 139 n y # _atom_sites.entry_id 8TRN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 401 401 MG MG . E 3 ADP A 1 402 403 ADP ADP . F 4 9UE A 1 403 530 9UE 9UE . G 2 MG B 1 401 401 MG MG . H 3 ADP B 1 402 403 ADP ADP . I 4 9UE B 1 403 530 9UE 9UE . J 2 MG C 1 401 401 MG MG . K 3 ADP C 1 402 403 ADP ADP . L 4 9UE C 1 403 530 9UE 9UE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 3 163.278 155.565 172.43 1 47.56 ? PB ADP 402 A 1 HETATM 2 O O1B ADP . . . E 3 163.226 155.396 170.936 1 57.54 ? O1B ADP 402 A 1 HETATM 3 O O2B ADP . . . E 3 164.484 156.327 172.908 1 39.73 ? O2B ADP 402 A 1 HETATM 4 O O3B ADP . . . E 3 163.002 154.298 173.189 1 47.21 ? O3B ADP 402 A 1 HETATM 5 P PA ADP . . . E 3 160.505 156.087 172.912 1 52.84 ? PA ADP 402 A 1 HETATM 6 O O1A ADP . . . E 3 159.839 156.317 171.582 1 47.19 ? O1A ADP 402 A 1 HETATM 7 O O2A ADP . . . E 3 160.407 154.738 173.57 1 45.59 ? O2A ADP 402 A 1 HETATM 8 O O3A ADP . . . E 3 162.044 156.543 172.762 1 53.07 ? O3A ADP 402 A 1 HETATM 9 O O5' ADP . . . E 3 159.954 157.185 173.948 1 45.41 ? O5' ADP 402 A 1 HETATM 10 C C5' ADP . . . E 3 160.886 158.029 174.617 1 47.77 ? C5' ADP 402 A 1 HETATM 11 C C4' ADP . . . E 3 160.227 159.305 175.122 1 45.65 ? C4' ADP 402 A 1 HETATM 12 O O4' ADP . . . E 3 158.836 159.33 174.824 1 50.94 ? O4' ADP 402 A 1 HETATM 13 C C3' ADP . . . E 3 160.333 159.448 176.628 1 46.52 ? C3' ADP 402 A 1 HETATM 14 O O3' ADP . . . E 3 161.374 160.368 176.95 1 50.3 ? O3' ADP 402 A 1 HETATM 15 C C2' ADP . . . E 3 159.002 160.012 177.075 1 44.23 ? C2' ADP 402 A 1 HETATM 16 O O2' ADP . . . E 3 159.202 161.317 177.619 1 54.09 ? O2' ADP 402 A 1 HETATM 17 C C1' ADP . . . E 3 158.165 160.106 175.815 1 36.4 ? C1' ADP 402 A 1 HETATM 18 N N9 ADP . . . E 3 156.794 159.58 176.024 1 33.46 ? N9 ADP 402 A 1 HETATM 19 C C8 ADP . . . E 3 156.467 158.293 176.215 1 40.9 ? C8 ADP 402 A 1 HETATM 20 N N7 ADP . . . E 3 155.127 158.149 176.363 1 47.23 ? N7 ADP 402 A 1 HETATM 21 C C5 ADP . . . E 3 154.578 159.369 176.263 1 49.04 ? C5 ADP 402 A 1 HETATM 22 C C6 ADP . . . E 3 153.212 159.928 176.326 1 43.32 ? C6 ADP 402 A 1 HETATM 23 N N6 ADP . . . E 3 152.14 159.127 176.532 1 42.97 ? N6 ADP 402 A 1 HETATM 24 N N1 ADP . . . E 3 153.07 161.26 176.172 1 39.7 ? N1 ADP 402 A 1 HETATM 25 C C2 ADP . . . E 3 154.129 162.06 175.967 1 44.4 ? C2 ADP 402 A 1 HETATM 26 N N3 ADP . . . E 3 155.395 161.622 175.899 1 39.15 ? N3 ADP 402 A 1 HETATM 27 C C4 ADP . . . E 3 155.68 160.308 176.04 1 42.12 ? C4 ADP 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #