data_8TRN
#
_model_server_result.job_id            DqE9EGfPc2gQ1ZIQzyQiLQ 
_model_server_result.datetime_utc      '2024-11-05 08:37:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8trn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    8TRN 
#
_exptl.entry_id    8TRN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TRN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TRN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG MG . A MG 401 1_555 E O1B ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc2 G MG MG . B MG 401 1_555 H O1B ADP . B ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc3 J MG MG . C MG 401 1_555 K O1B ADP . C ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 96 n n 
PB O2B ADP sing 97 n n 
PB O3B ADP sing 98 n n 
PB O3A ADP sing 99 n n 
O2B HOB2 ADP sing 100 n n 
O3B HOB3 ADP sing 101 n n 
PA O1A ADP doub 102 n n 
PA O2A ADP sing 103 n n 
PA O3A ADP sing 104 n n 
PA O5' ADP sing 105 n n 
O2A HOA2 ADP sing 106 n n 
O5' C5' ADP sing 107 n n 
C5' C4' ADP sing 108 n n 
C5' "H5'1" ADP sing 109 n n 
C5' "H5'2" ADP sing 110 n n 
C4' O4' ADP sing 111 n n 
C4' C3' ADP sing 112 n n 
C4' H4' ADP sing 113 n n 
O4' C1' ADP sing 114 n n 
C3' O3' ADP sing 115 n n 
C3' C2' ADP sing 116 n n 
C3' H3' ADP sing 117 n n 
O3' HO3' ADP sing 118 n n 
C2' O2' ADP sing 119 n n 
C2' C1' ADP sing 120 n n 
C2' H2' ADP sing 121 n n 
O2' HO2' ADP sing 122 n n 
C1' N9 ADP sing 123 n n 
C1' H1' ADP sing 124 n n 
N9 C8 ADP sing 125 n y 
N9 C4 ADP sing 126 n y 
C8 N7 ADP doub 127 n y 
C8 H8 ADP sing 128 n n 
N7 C5 ADP sing 129 n y 
C5 C6 ADP sing 130 n y 
C5 C4 ADP doub 131 n y 
C6 N6 ADP sing 132 n n 
C6 N1 ADP doub 133 n y 
N6 HN61 ADP sing 134 n n 
N6 HN62 ADP sing 135 n n 
N1 C2 ADP sing 136 n y 
C2 N3 ADP doub 137 n y 
C2 H2 ADP sing 138 n n 
N3 C4 ADP sing 139 n y 
#
_atom_sites.entry_id                     8TRN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MG A 1 401 401 MG MG . 
E 3 ADP A 1 402 403 ADP ADP . 
F 4 9UE A 1 403 530 9UE 9UE . 
G 2 MG B 1 401 401 MG MG . 
H 3 ADP B 1 402 403 ADP ADP . 
I 4 9UE B 1 403 530 9UE 9UE . 
J 2 MG C 1 401 401 MG MG . 
K 3 ADP C 1 402 403 ADP ADP . 
L 4 9UE C 1 403 530 9UE 9UE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 3 174.925 187.49 200.566 1 43.05 ? PB ADP 402 B 1 
HETATM 2 O O1B ADP . . . H 3 174.938 187.667 199.072 1 49.12 ? O1B ADP 402 B 1 
HETATM 3 O O2B ADP . . . H 3 173.917 186.48 201.044 1 36.41 ? O2B ADP 402 B 1 
HETATM 4 O O3B ADP . . . H 3 174.915 188.786 201.325 1 45.3 ? O3B ADP 402 B 1 
HETATM 5 P PA ADP . . . H 3 177.745 187.592 201.047 1 45.86 ? PA ADP 402 B 1 
HETATM 6 O O1A ADP . . . H 3 178.445 187.516 199.717 1 47.18 ? O1A ADP 402 B 1 
HETATM 7 O O2A ADP . . . H 3 177.543 188.93 201.706 1 38.73 ? O2A ADP 402 B 1 
HETATM 8 O O3A ADP . . . H 3 176.345 186.808 200.897 1 44.4 ? O3A ADP 402 B 1 
HETATM 9 O O5' ADP . . . H 3 178.525 186.643 202.083 1 42.14 ? O5' ADP 402 B 1 
HETATM 10 C C5' ADP . . . H 3 177.803 185.614 202.752 1 44.05 ? C5' ADP 402 B 1 
HETATM 11 C C4' ADP . . . H 3 178.727 184.514 203.256 1 37.64 ? C4' ADP 402 B 1 
HETATM 12 O O4' ADP . . . H 3 180.089 184.797 202.958 1 43.63 ? O4' ADP 402 B 1 
HETATM 13 C C3' ADP . . . H 3 178.656 184.351 204.762 1 38.29 ? C3' ADP 402 B 1 
HETATM 14 O O3' ADP . . . H 3 177.843 183.224 205.084 1 46.08 ? O3' ADP 402 B 1 
HETATM 15 C C2' ADP . . . H 3 180.078 184.094 205.209 1 39.42 ? C2' ADP 402 B 1 
HETATM 16 O O2' ADP . . . H 3 180.171 182.777 205.752 1 54.4 ? O2' ADP 402 B 1 
HETATM 17 C C1' ADP . . . H 3 180.915 184.188 203.948 1 33.96 ? C1' ADP 402 B 1 
HETATM 18 N N9 ADP . . . H 3 182.136 185.003 204.157 1 32.96 ? N9 ADP 402 B 1 
HETATM 19 C C8 ADP . . . H 3 182.171 186.331 204.349 1 38.23 ? C8 ADP 402 B 1 
HETATM 20 N N7 ADP . . . H 3 183.446 186.767 204.497 1 41.21 ? N7 ADP 402 B 1 
HETATM 21 C C5 ADP . . . H 3 184.251 185.698 204.396 1 41.09 ? C5 ADP 402 B 1 
HETATM 22 C C6 ADP . . . H 3 185.707 185.454 204.459 1 36.92 ? C6 ADP 402 B 1 
HETATM 23 N N6 ADP . . . H 3 186.576 186.472 204.665 1 35.55 ? N6 ADP 402 B 1 
HETATM 24 N N1 ADP . . . H 3 186.139 184.187 204.304 1 34.84 ? N1 ADP 402 B 1 
HETATM 25 C C2 ADP . . . H 3 185.283 183.173 204.099 1 39.61 ? C2 ADP 402 B 1 
HETATM 26 N N3 ADP . . . H 3 183.951 183.321 204.031 1 35.48 ? N3 ADP 402 B 1 
HETATM 27 C C4 ADP . . . H 3 183.384 184.539 204.173 1 36.56 ? C4 ADP 402 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#