data_8TRN # _model_server_result.job_id ZBRbdXOGRJKxYd1Az6u6hQ _model_server_result.datetime_utc '2024-11-30 21:48:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8trn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 8TRN # _exptl.entry_id 8TRN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 709.67 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Jasplakinolide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TRN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 401 1_555 E O1B ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 G MG MG . B MG 401 1_555 H O1B ADP . B ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc3 J MG MG . C MG 401 1_555 K O1B ADP . C ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C36 H45 Br N4 O6' _chem_comp.formula_weight 709.67 _chem_comp.id 9UE _chem_comp.mon_nstd_flag . _chem_comp.name Jasplakinolide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C7 9UE doub 1 n n C5 C6 9UE sing 2 n n C5 C4 9UE sing 3 n n C C1 9UE sing 4 n n C19 N1 9UE sing 5 n n C6 C29 9UE sing 6 n n C6 N 9UE sing 7 n n O1 C4 9UE doub 8 n n C4 O 9UE sing 9 n n C34 C29 9UE doub 10 n y C34 C33 9UE sing 11 n y C7 N 9UE sing 12 n n C7 C8 9UE sing 13 n n BR C28 9UE sing 14 n n C1 C2 9UE sing 15 n n C1 C15 9UE sing 16 n n C29 C30 9UE sing 17 n y C20 C8 9UE sing 18 n n C20 C21 9UE sing 19 n n O C3 9UE sing 20 n n C33 C32 9UE doub 21 n y C3 C2 9UE sing 22 n n C3 C35 9UE sing 23 n n N1 C8 9UE sing 24 n n N1 C9 9UE sing 25 n n C10 C18 9UE sing 26 n n C10 C9 9UE sing 27 n n C10 N2 9UE sing 28 n n C17 C12 9UE sing 29 n n C15 C14 9UE doub 30 e n C9 O3 9UE doub 31 n n C30 C31 9UE doub 32 n y C32 C31 9UE sing 33 n y C32 O5 9UE sing 34 n n C28 C21 9UE doub 35 n y C28 N3 9UE sing 36 n y C21 C22 9UE sing 37 n y N2 C11 9UE sing 38 n n C11 O4 9UE doub 39 n n C11 C12 9UE sing 40 n n C14 C16 9UE sing 41 n n C14 C13 9UE sing 42 n n C12 C13 9UE sing 43 n n N3 C27 9UE sing 44 n y C22 C23 9UE doub 45 n y C22 C27 9UE sing 46 n y C23 C24 9UE sing 47 n y C27 C26 9UE doub 48 n y C24 C25 9UE doub 49 n y C26 C25 9UE sing 50 n y C35 H1 9UE sing 51 n n C35 H2 9UE sing 52 n n C35 H3 9UE sing 53 n n C34 H4 9UE sing 54 n n C33 H5 9UE sing 55 n n C31 H6 9UE sing 56 n n C30 H7 9UE sing 57 n n C26 H8 9UE sing 58 n n C25 H9 9UE sing 59 n n C24 H10 9UE sing 60 n n C1 H11 9UE sing 61 n n C2 H12 9UE sing 62 n n C2 H13 9UE sing 63 n n C3 H14 9UE sing 64 n n C5 H15 9UE sing 65 n n C5 H16 9UE sing 66 n n C6 H17 9UE sing 67 n n C23 H18 9UE sing 68 n n C20 H19 9UE sing 69 n n C20 H20 9UE sing 70 n n C19 H21 9UE sing 71 n n C19 H22 9UE sing 72 n n C19 H23 9UE sing 73 n n C18 H24 9UE sing 74 n n C18 H25 9UE sing 75 n n C18 H26 9UE sing 76 n n C17 H27 9UE sing 77 n n C17 H28 9UE sing 78 n n C17 H29 9UE sing 79 n n N3 H30 9UE sing 80 n n C16 H31 9UE sing 81 n n C16 H32 9UE sing 82 n n C16 H33 9UE sing 83 n n C15 H34 9UE sing 84 n n N2 H35 9UE sing 85 n n C13 H36 9UE sing 86 n n C13 H37 9UE sing 87 n n C12 H38 9UE sing 88 n n C10 H39 9UE sing 89 n n C8 H40 9UE sing 90 n n O5 H41 9UE sing 91 n n N H42 9UE sing 92 n n C H43 9UE sing 93 n n C H44 9UE sing 94 n n C H45 9UE sing 95 n n # _atom_sites.entry_id 8TRN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 401 401 MG MG . E 3 ADP A 1 402 403 ADP ADP . F 4 9UE A 1 403 530 9UE 9UE . G 2 MG B 1 401 401 MG MG . H 3 ADP B 1 402 403 ADP ADP . I 4 9UE B 1 403 530 9UE 9UE . J 2 MG C 1 401 401 MG MG . K 3 ADP C 1 402 403 ADP ADP . L 4 9UE C 1 403 530 9UE 9UE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C35 9UE . . . I 4 187.779 173.44 225.406 1 58.18 ? C35 9UE 403 B 1 HETATM 2 C C34 9UE . . . I 4 186.387 166.677 224.353 1 57.01 ? C34 9UE 403 B 1 HETATM 3 C C33 9UE . . . I 4 186.713 165.371 224.053 1 56.86 ? C33 9UE 403 B 1 HETATM 4 C C32 9UE . . . I 4 186.035 164.333 224.664 1 56.05 ? C32 9UE 403 B 1 HETATM 5 C C31 9UE . . . I 4 185.029 164.604 225.575 1 56.47 ? C31 9UE 403 B 1 HETATM 6 C C30 9UE . . . I 4 184.709 165.912 225.871 1 57.94 ? C30 9UE 403 B 1 HETATM 7 C C29 9UE . . . I 4 185.388 166.946 225.266 1 56.78 ? C29 9UE 403 B 1 HETATM 8 C C28 9UE . . . I 4 177.96 167.7 224.701 1 59.92 ? C28 9UE 403 B 1 HETATM 9 C C27 9UE . . . I 4 178.118 167.085 222.55 1 59.65 ? C27 9UE 403 B 1 HETATM 10 C C26 9UE . . . I 4 177.938 166.764 221.211 1 60.07 ? C26 9UE 403 B 1 HETATM 11 C C25 9UE . . . I 4 179.006 166.326 220.463 1 54.66 ? C25 9UE 403 B 1 HETATM 12 C C24 9UE . . . I 4 180.262 166.204 221.035 1 57.76 ? C24 9UE 403 B 1 HETATM 13 O O2 9UE . . . I 4 182.723 168.136 227.042 1 63.94 ? O2 9UE 403 B 1 HETATM 14 C C1 9UE . . . I 4 183.974 173.455 225.311 1 56.27 ? C1 9UE 403 B 1 HETATM 15 O O1 9UE . . . I 4 186.633 170.529 226.866 1 58.09 ? O1 9UE 403 B 1 HETATM 16 C C2 9UE . . . I 4 185.364 174.075 225.485 1 59.14 ? C2 9UE 403 B 1 HETATM 17 C C3 9UE . . . I 4 186.375 172.983 225.819 1 61.78 ? C3 9UE 403 B 1 HETATM 18 O O3 9UE . . . I 4 180.488 170.571 223.676 1 65.33 ? O3 9UE 403 B 1 HETATM 19 C C4 9UE . . . I 4 186.247 170.576 225.727 1 58.15 ? C4 9UE 403 B 1 HETATM 20 C C5 9UE . . . I 4 185.988 169.334 224.929 1 55.97 ? C5 9UE 403 B 1 HETATM 21 O O4 9UE . . . I 4 179.165 174.871 225.269 1 60.51 ? O4 9UE 403 B 1 HETATM 22 C C6 9UE . . . I 4 185.028 168.363 225.583 1 54.46 ? C6 9UE 403 B 1 HETATM 23 C C23 9UE . . . I 4 180.459 166.515 222.348 1 58.97 ? C23 9UE 403 B 1 HETATM 24 C C22 9UE . . . I 4 179.392 166.96 223.125 1 55.44 ? C22 9UE 403 B 1 HETATM 25 C C21 9UE . . . I 4 179.249 167.365 224.524 1 53.9 ? C21 9UE 403 B 1 HETATM 26 C C20 9UE . . . I 4 180.346 167.41 225.554 1 56.06 ? C20 9UE 403 B 1 HETATM 27 C C19 9UE . . . I 4 180.236 170.018 227.192 1 57.81 ? C19 9UE 403 B 1 HETATM 28 C C18 9UE . . . I 4 177.986 171.851 225.083 1 55.08 ? C18 9UE 403 B 1 HETATM 29 C C17 9UE . . . I 4 179.194 176.455 223.043 1 52.96 ? C17 9UE 403 B 1 HETATM 30 N N3 9UE . . . I 4 177.271 167.536 223.533 1 59.07 ? N3 9UE 403 B 1 HETATM 31 C C16 9UE . . . I 4 182.858 173.644 222.579 1 53.96 ? C16 9UE 403 B 1 HETATM 32 C C15 9UE . . . I 4 183.02 174.528 224.87 1 55.24 ? C15 9UE 403 B 1 HETATM 33 N N2 9UE . . . I 4 179.88 173.058 224.147 1 63.01 ? N2 9UE 403 B 1 HETATM 34 C C14 9UE . . . I 4 182.515 174.624 223.67 1 55.84 ? C14 9UE 403 B 1 HETATM 35 C C13 9UE . . . I 4 181.562 175.748 223.365 1 57.52 ? C13 9UE 403 B 1 HETATM 36 C C12 9UE . . . I 4 180.137 175.273 223.162 1 56.13 ? C12 9UE 403 B 1 HETATM 37 N N1 9UE . . . I 4 180.54 169.859 225.762 1 54.67 ? N1 9UE 403 B 1 HETATM 38 C C11 9UE . . . I 4 179.682 174.386 224.29 1 61.52 ? C11 9UE 403 B 1 HETATM 39 C C10 9UE . . . I 4 179.496 172.065 225.155 1 51.84 ? C10 9UE 403 B 1 HETATM 40 C C9 9UE . . . I 4 180.202 170.784 224.837 1 53.73 ? C9 9UE 403 B 1 HETATM 41 C C8 9UE . . . I 4 181.22 168.639 225.29 1 52.56 ? C8 9UE 403 B 1 HETATM 42 C C7 9UE . . . I 4 182.59 168.436 225.879 1 54.45 ? C7 9UE 403 B 1 HETATM 43 O O5 9UE . . . I 4 186.352 163.046 224.371 1 58.75 ? O5 9UE 403 B 1 HETATM 44 BR BR 9UE . . . I 4 177.191 168.302 226.319 1 120.54 ? BR 9UE 403 B 1 HETATM 45 N N 9UE . . . I 4 183.668 168.574 225.079 1 54.9 ? N 9UE 403 B 1 HETATM 46 O O 9UE . . . I 4 186.041 171.761 225.13 1 63.44 ? O 9UE 403 B 1 HETATM 47 C C 9UE . . . I 4 183.516 172.918 226.667 1 53.8 ? C 9UE 403 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 47 #