data_8TRQ
#
_model_server_result.job_id            kjsxEaD6zVS4KlH3xLSh0Q 
_model_server_result.datetime_utc      '2024-11-16 12:53:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8trq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":301}' 
#
_entry.id    8TRQ 
#
_exptl.entry_id    8TRQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TRQ 
_cell.length_a            58.603 
_cell.length_b            76.616 
_cell.length_c            224.184 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TRQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 P N N 
#
_pdbx_entity_branch.entity_id    6 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   6 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
6 n F NAG 1 F 1 NAG A 183 NAG 
6 n F NAG 2 F 2 NAG A 201 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 92 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 D SG CYS 138 D CYS 150 1_555 D SG CYS 188 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 D SG CYS 163 D CYS 175 1_555 E SG CYS 172 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf7 E SG CYS 24 E CYS 23 1_555 E SG CYS 92 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 E SG CYS 146 E CYS 158 1_555 E SG CYS 211 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
covale ? covale1 A ND2 ASN 118 A ASN 118 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 C C THR 5 C THR 63 1_555 C N CIR 6 C CIR 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 C C CIR 6 C CIR 64 1_555 C N SER 7 C SER 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     8TRQ 
_atom_sites.fract_transf_matrix[1][1]    0.017064 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013052 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 GOL A 1 301 301 GOL GOL . 
H 7 GOL A 1 302 1 GOL GOL . 
I 7 GOL A 1 303 6 GOL GOL . 
J 7 GOL A 1 304 8 GOL GOL . 
K 7 GOL A 1 305 10 GOL GOL . 
L 7 GOL B 1 201 4 GOL GOL . 
M 7 GOL B 1 202 7 GOL GOL . 
N 7 GOL D 1 301 9 GOL GOL . 
O 7 GOL E 1 301 3 GOL GOL . 
P 7 GOL E 1 302 5 GOL GOL . 
Q 8 HOH A 1 401 10 HOH HOH . 
Q 8 HOH A 2 402 29 HOH HOH . 
Q 8 HOH A 3 403 37 HOH HOH . 
Q 8 HOH A 4 404 4 HOH HOH . 
Q 8 HOH A 5 405 36 HOH HOH . 
Q 8 HOH A 6 406 9 HOH HOH . 
Q 8 HOH A 7 407 27 HOH HOH . 
Q 8 HOH A 8 408 33 HOH HOH . 
Q 8 HOH A 9 409 26 HOH HOH . 
Q 8 HOH A 10 410 35 HOH HOH . 
Q 8 HOH A 11 411 32 HOH HOH . 
Q 8 HOH A 12 412 39 HOH HOH . 
Q 8 HOH A 13 413 55 HOH HOH . 
Q 8 HOH A 14 414 31 HOH HOH . 
Q 8 HOH A 15 415 50 HOH HOH . 
Q 8 HOH A 16 416 54 HOH HOH . 
R 8 HOH B 1 301 7 HOH HOH . 
R 8 HOH B 2 302 2 HOH HOH . 
R 8 HOH B 3 303 34 HOH HOH . 
R 8 HOH B 4 304 8 HOH HOH . 
R 8 HOH B 5 305 19 HOH HOH . 
R 8 HOH B 6 306 53 HOH HOH . 
R 8 HOH B 7 307 51 HOH HOH . 
R 8 HOH B 8 308 40 HOH HOH . 
R 8 HOH B 9 309 46 HOH HOH . 
R 8 HOH B 10 310 45 HOH HOH . 
S 8 HOH D 1 401 23 HOH HOH . 
S 8 HOH D 2 402 24 HOH HOH . 
S 8 HOH D 3 403 52 HOH HOH . 
T 8 HOH E 1 401 1 HOH HOH . 
T 8 HOH E 2 402 25 HOH HOH . 
T 8 HOH E 3 403 21 HOH HOH . 
T 8 HOH E 4 404 3 HOH HOH . 
T 8 HOH E 5 405 6 HOH HOH . 
T 8 HOH E 6 406 49 HOH HOH . 
T 8 HOH E 7 407 48 HOH HOH . 
T 8 HOH E 8 408 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 7 7.907 -12.401 -4.755 1 67.31 ? C1 GOL 301 D 1 
HETATM 2 O O1 GOL . . . N 7 8.467 -12.979 -5.908 1 81.87 ? O1 GOL 301 D 1 
HETATM 3 C C2 GOL . . . N 7 6.683 -13.176 -4.384 1 73.8 ? C2 GOL 301 D 1 
HETATM 4 O O2 GOL . . . N 7 6.49 -13.162 -3.006 1 101.68 ? O2 GOL 301 D 1 
HETATM 5 C C3 GOL . . . N 7 5.589 -12.388 -5.098 1 67.18 ? C3 GOL 301 D 1 
HETATM 6 O O3 GOL . . . N 7 4.392 -12.649 -4.424 1 71.09 ? O3 GOL 301 D 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#