data_8TRR # _model_server_result.job_id CW7djHD8ytUs_r2w-xRfhg _model_server_result.datetime_utc '2024-11-16 10:51:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8trr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":301}' # _entry.id 8TRR # _exptl.entry_id 8TRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.16 _cell.angle_gamma 90 _cell.entry_id 8TRR _cell.length_a 98.929 _cell.length_b 59.97 _cell.length_c 379.159 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,PA,QA,RA,SA,TA 1 1 F,G,H,I,J,M,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,UA,VA,WA,XA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 O N N ? 8 P N N ? 8 T N N ? 8 U N N ? 8 W N N ? 8 Y N N ? 8 CA N N ? 8 DA N N ? 8 FA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 7 3 2 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n K NAG 1 K 1 NAG A 182 NAG 6 n K NAG 2 K 2 NAG A 185 NAG 6 n L NAG 1 L 1 NAG A 183 NAG 6 n L NAG 2 L 2 NAG A 184 NAG 7 n M NAG 1 M 1 NAG F 182 NAG 7 n M NAG 2 M 2 NAG F 183 NAG 7 n M NAG 3 M 3 NAG F 186 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 D SG CYS 24 D CYS 23 1_555 D SG CYS 93 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf5 D SG CYS 138 D CYS 149 1_555 D SG CYS 188 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 D SG CYS 163 D CYS 174 1_555 E SG CYS 170 E CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf8 E SG CYS 144 E CYS 157 1_555 E SG CYS 209 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf9 F SG CYS 107 F CYS 107 1_555 F SG CYS 163 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 G SG CYS 15 G CYS 15 1_555 G SG CYS 79 G CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf11 G SG CYS 117 G CYS 117 1_555 G SG CYS 173 G CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf12 I SG CYS 24 I CYS 23 1_555 I SG CYS 93 I CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf13 I SG CYS 138 I CYS 149 1_555 I SG CYS 188 I CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 I SG CYS 163 I CYS 174 1_555 J SG CYS 170 J CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 J SG CYS 23 J CYS 23 1_555 J SG CYS 91 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 J SG CYS 144 J CYS 157 1_555 J SG CYS 209 J CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 B ND2 ASN 19 B ASN 19 1_555 S C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C C THR 5 C THR 63 1_555 C N CIR 6 C CIR 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 C C CIR 6 C CIR 64 1_555 C N SER 7 C SER 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale6 F ND2 ASN 78 F ASN 78 1_555 BA C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 F ND2 ASN 118 F ASN 118 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale8 H C THR 5 H THR 63 1_555 H N CIR 6 H CIR 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale9 H C CIR 6 H CIR 64 1_555 H N SER 7 H SER 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale10 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale12 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale13 M O4 NAG . M NAG 2 1_555 M C1 NAG . M NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 8TRR _atom_sites.fract_transf_matrix[1][1] 0.010108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 8 GOL A 1 201 201 GOL GOL . O 8 GOL A 1 202 301 GOL GOL . P 8 GOL A 1 203 401 GOL GOL . Q 9 SO4 A 1 204 11 SO4 SO4 . R 9 SO4 A 1 205 12 SO4 SO4 . S 10 NAG B 1 201 191 NAG NAG . T 8 GOL B 1 202 201 GOL GOL . U 8 GOL B 1 203 301 GOL GOL . V 9 SO4 B 1 204 10 SO4 SO4 . W 8 GOL D 1 301 314 GOL GOL . X 9 SO4 D 1 302 1 SO4 SO4 . Y 8 GOL E 1 301 316 GOL GOL . Z 9 SO4 E 1 302 2 SO4 SO4 . AA 9 SO4 E 1 303 13 SO4 SO4 . BA 10 NAG F 1 201 184 NAG NAG . CA 8 GOL F 1 202 201 GOL GOL . DA 8 GOL F 1 203 201 GOL GOL . EA 9 SO4 F 1 204 4 SO4 SO4 . FA 8 GOL G 1 301 301 GOL GOL . GA 9 SO4 G 1 302 3 SO4 SO4 . HA 9 SO4 G 1 303 5 SO4 SO4 . IA 9 SO4 G 1 304 6 SO4 SO4 . JA 9 SO4 G 1 305 15 SO4 SO4 . KA 9 SO4 G 1 306 16 SO4 SO4 . LA 9 SO4 I 1 301 7 SO4 SO4 . MA 9 SO4 I 1 302 8 SO4 SO4 . NA 9 SO4 J 1 301 14 SO4 SO4 . OA 9 SO4 J 1 302 17 SO4 SO4 . PA 11 HOH A 1 301 54 HOH HOH . PA 11 HOH A 2 302 113 HOH HOH . PA 11 HOH A 3 303 34 HOH HOH . PA 11 HOH A 4 304 74 HOH HOH . PA 11 HOH A 5 305 63 HOH HOH . PA 11 HOH A 6 306 88 HOH HOH . PA 11 HOH A 7 307 36 HOH HOH . PA 11 HOH A 8 308 50 HOH HOH . PA 11 HOH A 9 309 6 HOH HOH . PA 11 HOH A 10 310 89 HOH HOH . PA 11 HOH A 11 311 92 HOH HOH . PA 11 HOH A 12 312 115 HOH HOH . PA 11 HOH A 13 313 97 HOH HOH . PA 11 HOH A 14 314 94 HOH HOH . PA 11 HOH A 15 315 59 HOH HOH . PA 11 HOH A 16 316 100 HOH HOH . PA 11 HOH A 17 317 99 HOH HOH . QA 11 HOH B 1 301 21 HOH HOH . QA 11 HOH B 2 302 10 HOH HOH . QA 11 HOH B 3 303 17 HOH HOH . QA 11 HOH B 4 304 29 HOH HOH . QA 11 HOH B 5 305 69 HOH HOH . QA 11 HOH B 6 306 45 HOH HOH . QA 11 HOH B 7 307 11 HOH HOH . QA 11 HOH B 8 308 95 HOH HOH . QA 11 HOH B 9 309 114 HOH HOH . QA 11 HOH B 10 310 61 HOH HOH . QA 11 HOH B 11 311 64 HOH HOH . QA 11 HOH B 12 312 90 HOH HOH . QA 11 HOH B 13 313 55 HOH HOH . QA 11 HOH B 14 314 33 HOH HOH . QA 11 HOH B 15 315 98 HOH HOH . QA 11 HOH B 16 316 66 HOH HOH . QA 11 HOH B 17 317 65 HOH HOH . RA 11 HOH C 1 101 12 HOH HOH . RA 11 HOH C 2 102 93 HOH HOH . SA 11 HOH D 1 401 18 HOH HOH . SA 11 HOH D 2 402 73 HOH HOH . SA 11 HOH D 3 403 87 HOH HOH . SA 11 HOH D 4 404 22 HOH HOH . SA 11 HOH D 5 405 24 HOH HOH . SA 11 HOH D 6 406 96 HOH HOH . SA 11 HOH D 7 407 71 HOH HOH . SA 11 HOH D 8 408 116 HOH HOH . SA 11 HOH D 9 409 70 HOH HOH . SA 11 HOH D 10 410 72 HOH HOH . SA 11 HOH D 11 411 102 HOH HOH . TA 11 HOH E 1 401 7 HOH HOH . TA 11 HOH E 2 402 15 HOH HOH . TA 11 HOH E 3 403 37 HOH HOH . TA 11 HOH E 4 404 77 HOH HOH . TA 11 HOH E 5 405 75 HOH HOH . TA 11 HOH E 6 406 76 HOH HOH . TA 11 HOH E 7 407 14 HOH HOH . UA 11 HOH F 1 301 78 HOH HOH . UA 11 HOH F 2 302 51 HOH HOH . UA 11 HOH F 3 303 4 HOH HOH . UA 11 HOH F 4 304 19 HOH HOH . UA 11 HOH F 5 305 44 HOH HOH . UA 11 HOH F 6 306 42 HOH HOH . UA 11 HOH F 7 307 23 HOH HOH . UA 11 HOH F 8 308 79 HOH HOH . UA 11 HOH F 9 309 81 HOH HOH . UA 11 HOH F 10 310 104 HOH HOH . UA 11 HOH F 11 311 80 HOH HOH . UA 11 HOH F 12 312 39 HOH HOH . VA 11 HOH G 1 401 31 HOH HOH . VA 11 HOH G 2 402 47 HOH HOH . VA 11 HOH G 3 403 28 HOH HOH . VA 11 HOH G 4 404 40 HOH HOH . VA 11 HOH G 5 405 20 HOH HOH . VA 11 HOH G 6 406 103 HOH HOH . WA 11 HOH I 1 401 13 HOH HOH . WA 11 HOH I 2 402 110 HOH HOH . WA 11 HOH I 3 403 8 HOH HOH . WA 11 HOH I 4 404 43 HOH HOH . WA 11 HOH I 5 405 109 HOH HOH . WA 11 HOH I 6 406 5 HOH HOH . WA 11 HOH I 7 407 84 HOH HOH . WA 11 HOH I 8 408 86 HOH HOH . WA 11 HOH I 9 409 111 HOH HOH . WA 11 HOH I 10 410 108 HOH HOH . WA 11 HOH I 11 411 85 HOH HOH . WA 11 HOH I 12 412 112 HOH HOH . XA 11 HOH J 1 401 9 HOH HOH . XA 11 HOH J 2 402 26 HOH HOH . XA 11 HOH J 3 403 57 HOH HOH . XA 11 HOH J 4 404 46 HOH HOH . XA 11 HOH J 5 405 107 HOH HOH . XA 11 HOH J 6 406 101 HOH HOH . XA 11 HOH J 7 407 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . W 8 -0.863 10.397 18.832 1 80.5 ? C1 GOL 301 D 1 HETATM 2 O O1 GOL . . . W 8 0.257 11.19 19.116 1 79.43 ? O1 GOL 301 D 1 HETATM 3 C C2 GOL . . . W 8 -2.046 11.35 18.468 1 81.49 ? C2 GOL 301 D 1 HETATM 4 O O2 GOL . . . W 8 -2.179 12.398 19.35 1 81.92 ? O2 GOL 301 D 1 HETATM 5 C C3 GOL . . . W 8 -3.321 10.482 18.463 1 82.6 ? C3 GOL 301 D 1 HETATM 6 O O3 GOL . . . W 8 -4.39 11.392 18.406 1 82.25 ? O3 GOL 301 D 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 640 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #