data_8TRV # _model_server_result.job_id 7Eg444YgftjtF-RdW7o4EQ _model_server_result.datetime_utc '2024-11-14 11:30:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8trv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":301}' # _entry.id 8TRV # _exptl.entry_id 8TRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TRV _cell.length_a 73.933 _cell.length_b 110.558 _cell.length_c 263.443 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O 1 1 D,E,F,P,Q,R,S,T,U,V,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 70 1_555 A SG CYS 166 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 83 A CYS 105 1_555 A SG CYS 93 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 179 A CYS 201 1_555 A SG CYS 225 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 208 A CYS 230 1_555 A SG CYS 238 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 240 A CYS 262 1_555 A SG CYS 251 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 254 A CYS 276 1_555 A SG CYS 268 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 A SG CYS 271 A CYS 293 1_555 A SG CYS 285 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 287 A CYS 309 1_555 A SG CYS 303 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf9 B SG CYS 22 C CYS 23 1_555 B SG CYS 96 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf10 B SG CYS 142 C CYS 164 1_555 B SG CYS 198 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 C SG CYS 23 G CYS 23 1_555 C SG CYS 88 G CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf12 C SG CYS 137 G CYS 152 1_555 C SG CYS 197 G CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf13 D SG CYS 22 D CYS 23 1_555 D SG CYS 96 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf14 D SG CYS 142 D CYS 164 1_555 D SG CYS 198 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf15 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf16 E SG CYS 137 E CYS 152 1_555 E SG CYS 197 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf17 F SG CYS 83 B CYS 105 1_555 F SG CYS 93 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf18 F SG CYS 179 B CYS 201 1_555 F SG CYS 225 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf19 F SG CYS 208 B CYS 230 1_555 F SG CYS 238 B CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf20 F SG CYS 240 B CYS 262 1_555 F SG CYS 251 B CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 F SG CYS 254 B CYS 276 1_555 F SG CYS 268 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf22 F SG CYS 271 B CYS 293 1_555 F SG CYS 285 B CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf23 F SG CYS 287 B CYS 309 1_555 F SG CYS 303 B CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A OD1 ASP 121 A ASP 143 1_555 I NA NA . A NA 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc2 A OD2 ASP 121 A ASP 143 1_555 I NA NA . A NA 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A OD1 ASP 121 A ASP 143 1_555 J NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 A OD2 ASP 121 A ASP 143 1_555 J NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 A O THR 122 A THR 144 1_555 I NA NA . A NA 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc6 A OE1 GLU 144 A GLU 166 1_555 J NA NA . A NA 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc7 A OE2 GLU 144 A GLU 166 1_555 J NA NA . A NA 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc8 B OG SER 179 C SER 201 1_555 M NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc9 D OD1 ASN 201 D ASN 223 1_555 R NA NA . D NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8TRV _atom_sites.fract_transf_matrix[1][1] 0.013526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 IOD A 1 401 6 IOD IOD . H 5 CL A 1 402 9 CL CL . I 6 NA A 1 403 1 NA NA . J 6 NA A 1 404 4 NA NA . K 5 CL C 1 301 2 CL CL . L 5 CL C 1 302 10 CL CL . M 6 NA C 1 303 2 NA NA . N 4 IOD G 1 301 2 IOD IOD . O 5 CL G 1 302 8 CL CL . P 7 EDO D 1 301 301 EDO EDO . Q 4 IOD D 1 302 4 IOD IOD . R 6 NA D 1 303 3 NA NA . S 4 IOD E 1 301 5 IOD IOD . T 5 CL E 1 302 4 CL CL . U 5 CL E 1 303 5 CL CL . V 5 CL E 1 304 6 CL CL . W 4 IOD B 1 401 1 IOD IOD . X 5 CL B 1 402 1 CL CL . Y 5 CL B 1 403 3 CL CL . Z 5 CL B 1 404 7 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . P 7 63.632 -91.269 68.705 1 113.09 ? C1 EDO 301 D 1 HETATM 2 O O1 EDO . . . P 7 64.902 -91.906 68.77 1 113.09 ? O1 EDO 301 D 1 HETATM 3 C C2 EDO . . . P 7 62.558 -92.325 68.904 1 113.09 ? C2 EDO 301 D 1 HETATM 4 O O2 EDO . . . P 7 62.592 -93.229 67.804 1 113.09 ? O2 EDO 301 D 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #