data_8TSD # _model_server_result.job_id vDa5Mj0o6cnL1fCbV2F7Uw _model_server_result.datetime_utc '2024-11-05 08:02:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 8TSD # _exptl.entry_id 8TSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 608.905 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(3R,6M)-3-(2-chloro-5-fluorophenyl)-6-[(4S)-5-cyano[1,2,4]triazolo[1,5-a]pyridin-6-yl]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-3-fluoro-5-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TSD _cell.length_a 86.902 _cell.length_b 121.522 _cell.length_c 192.652 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H14 Cl F5 N6 O2' _chem_comp.formula_weight 608.905 _chem_comp.id XUZ _chem_comp.mon_nstd_flag . _chem_comp.name N-{(3R,6M)-3-(2-chloro-5-fluorophenyl)-6-[(4S)-5-cyano[1,2,4]triazolo[1,5-a]pyridin-6-yl]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-3-fluoro-5-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RLY-2608 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 F01 XUZ sing 374 n n C03 C02 XUZ doub 375 n y C04 C03 XUZ sing 376 n y C05 C04 XUZ doub 377 n y CL06 C05 XUZ sing 378 n n C07 C05 XUZ sing 379 n y C08 C07 XUZ doub 380 n y C09 C07 XUZ sing 381 n n N10 C09 XUZ sing 382 n n C11 N10 XUZ sing 383 n n O12 C11 XUZ doub 384 n n C13 C11 XUZ sing 385 n n C14 C13 XUZ doub 386 n y C15 C14 XUZ sing 387 n y C17 C16 XUZ sing 388 n y C19 N18 XUZ sing 389 n n O20 C19 XUZ doub 390 n n C21 C19 XUZ sing 391 n n C22 C21 XUZ doub 392 n y C23 C22 XUZ sing 393 n y F24 C23 XUZ sing 394 n n C25 C23 XUZ doub 395 n y C26 C25 XUZ sing 396 n y C27 C26 XUZ doub 397 n y C28 C26 XUZ sing 398 n n F29 C28 XUZ sing 399 n n F30 C28 XUZ sing 400 n n F31 C28 XUZ sing 401 n n N18 C17 XUZ sing 402 n n C32 C17 XUZ doub 403 n y C16 C15 XUZ doub 404 n y C33 C15 XUZ sing 405 n n C34 C33 XUZ sing 406 n y C35 C34 XUZ doub 407 n y C36 C35 XUZ sing 408 n y N37 C36 XUZ doub 409 n y C38 N37 XUZ sing 410 n y N39 C38 XUZ doub 411 n y N40 N39 XUZ sing 412 n y C41 N40 XUZ sing 413 n y C42 C41 XUZ sing 414 n n N43 C42 XUZ trip 415 n n C02 C08 XUZ sing 416 n y C09 C32 XUZ sing 417 n n C13 C32 XUZ sing 418 n y C21 C27 XUZ sing 419 n y C33 C41 XUZ doub 420 n y C36 N40 XUZ sing 421 n y C22 H221 XUZ sing 422 n n C03 H031 XUZ sing 423 n n C04 H041 XUZ sing 424 n n C08 H081 XUZ sing 425 n n C09 H091 XUZ sing 426 n n C14 H141 XUZ sing 427 n n C16 H161 XUZ sing 428 n n C25 H251 XUZ sing 429 n n C27 H271 XUZ sing 430 n n C34 H341 XUZ sing 431 n n C35 H351 XUZ sing 432 n n C38 H381 XUZ sing 433 n n N10 H101 XUZ sing 434 n n N18 H181 XUZ sing 435 n n # _atom_sites.entry_id 8TSD _atom_sites.fract_transf_matrix[1][1] 0.011507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id XUZ _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1101 _pdbx_nonpoly_scheme.pdb_mon_id XUZ _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 XUZ . . . C 3 17.112 -17.519 -32.513 1 102.76 ? C13 XUZ 1101 A 1 HETATM 2 C C15 XUZ . . . C 3 15.656 -17.596 -34.503 1 101.17 ? C15 XUZ 1101 A 1 HETATM 3 C C17 XUZ . . . C 3 15.748 -15.566 -33.068 1 96.52 ? C17 XUZ 1101 A 1 HETATM 4 C C21 XUZ . . . C 3 14.483 -12.166 -31.339 1 96.58 ? C21 XUZ 1101 A 1 HETATM 5 C C22 XUZ . . . C 3 14.933 -11.179 -32.224 1 86.02 ? C22 XUZ 1101 A 1 HETATM 6 C C26 XUZ . . . C 3 13.399 -10.395 -30.038 1 87.96 ? C26 XUZ 1101 A 1 HETATM 7 C C28 XUZ . . . C 3 12.545 -9.986 -28.809 1 90.45 ? C28 XUZ 1101 A 1 HETATM 8 C C02 XUZ . . . C 3 19.144 -12.593 -32.517 1 90.11 ? C02 XUZ 1101 A 1 HETATM 9 C C03 XUZ . . . C 3 19.124 -11.691 -31.447 1 92.11 ? C03 XUZ 1101 A 1 HETATM 10 C C04 XUZ . . . C 3 18.548 -12.08 -30.241 1 97.32 ? C04 XUZ 1101 A 1 HETATM 11 C C05 XUZ . . . C 3 17.995 -13.35 -30.089 1 101.8 ? C05 XUZ 1101 A 1 HETATM 12 C C07 XUZ . . . C 3 18.007 -14.282 -31.127 1 101.78 ? C07 XUZ 1101 A 1 HETATM 13 C C08 XUZ . . . C 3 18.579 -13.873 -32.347 1 92.17 ? C08 XUZ 1101 A 1 HETATM 14 C C09 XUZ . . . C 3 17.372 -15.678 -30.933 1 100.39 ? C09 XUZ 1101 A 1 HETATM 15 C C11 XUZ . . . C 3 18.115 -17.913 -31.423 1 94.78 ? C11 XUZ 1101 A 1 HETATM 16 C C14 XUZ . . . C 3 16.605 -18.203 -33.629 1 92.06 ? C14 XUZ 1101 A 1 HETATM 17 C C16 XUZ . . . C 3 15.252 -16.282 -34.201 1 109.62 ? C16 XUZ 1101 A 1 HETATM 18 C C19 XUZ . . . C 3 14.818 -13.687 -31.529 1 98.14 ? C19 XUZ 1101 A 1 HETATM 19 C C23 XUZ . . . C 3 14.621 -9.818 -32.026 1 95.91 ? C23 XUZ 1101 A 1 HETATM 20 C C25 XUZ . . . C 3 13.847 -9.419 -30.923 1 98.18 ? C25 XUZ 1101 A 1 HETATM 21 C C27 XUZ . . . C 3 13.713 -11.741 -30.244 1 97.38 ? C27 XUZ 1101 A 1 HETATM 22 C C32 XUZ . . . C 3 16.684 -16.202 -32.237 1 95.87 ? C32 XUZ 1101 A 1 HETATM 23 C C33 XUZ . . . C 3 15.112 -18.346 -35.717 1 112.75 ? C33 XUZ 1101 A 1 HETATM 24 C C34 XUZ . . . C 3 16.041 -19.003 -36.612 1 118.84 ? C34 XUZ 1101 A 1 HETATM 25 C C35 XUZ . . . C 3 15.63 -19.692 -37.717 1 128.17 ? C35 XUZ 1101 A 1 HETATM 26 C C36 XUZ . . . C 3 14.241 -19.777 -38.04 1 116.72 ? C36 XUZ 1101 A 1 HETATM 27 C C38 XUZ . . . C 3 12.217 -20.101 -38.804 1 118.4 ? C38 XUZ 1101 A 1 HETATM 28 C C41 XUZ . . . C 3 13.751 -18.421 -36.02 1 115.54 ? C41 XUZ 1101 A 1 HETATM 29 C C42 XUZ . . . C 3 12.745 -17.803 -35.199 1 114.4 ? C42 XUZ 1101 A 1 HETATM 30 F F01 XUZ . . . C 3 19.695 -12.217 -33.666 1 93.65 ? F01 XUZ 1101 A 1 HETATM 31 F F24 XUZ . . . C 3 15.061 -8.904 -32.887 1 95.09 ? F24 XUZ 1101 A 1 HETATM 32 F F29 XUZ . . . C 3 13.248 -9.396 -27.829 1 92.64 ? F29 XUZ 1101 A 1 HETATM 33 F F30 XUZ . . . C 3 11.569 -9.12 -29.109 1 104.11 ? F30 XUZ 1101 A 1 HETATM 34 F F31 XUZ . . . C 3 11.92 -11.019 -28.23 1 93.52 ? F31 XUZ 1101 A 1 HETATM 35 N N10 XUZ . . . C 3 18.258 -16.813 -30.549 1 109.35 ? N10 XUZ 1101 A 1 HETATM 36 N N18 XUZ . . . C 3 15.348 -14.194 -32.753 1 95.12 ? N18 XUZ 1101 A 1 HETATM 37 N N37 XUZ . . . C 3 13.565 -20.385 -39.063 1 122.87 ? N37 XUZ 1101 A 1 HETATM 38 N N39 XUZ . . . C 3 12.029 -19.346 -37.669 1 124.59 ? N39 XUZ 1101 A 1 HETATM 39 N N40 XUZ . . . C 3 13.312 -19.134 -37.174 1 110.78 ? N40 XUZ 1101 A 1 HETATM 40 N N43 XUZ . . . C 3 11.939 -17.302 -34.537 1 123.6 ? N43 XUZ 1101 A 1 HETATM 41 O O12 XUZ . . . C 3 18.74 -18.95 -31.261 1 100.96 ? O12 XUZ 1101 A 1 HETATM 42 O O20 XUZ . . . C 3 14.628 -14.474 -30.621 1 101.41 ? O20 XUZ 1101 A 1 HETATM 43 CL CL06 XUZ . . . C 3 17.283 -13.764 -28.519 1 175.88 ? CL06 XUZ 1101 A 1 HETATM 44 H H221 XUZ . . . C 3 15.449 -11.407 -32.962 1 103.7 ? H221 XUZ 1101 A 1 HETATM 45 H H031 XUZ . . . C 3 19.49 -10.842 -31.539 1 111.02 ? H031 XUZ 1101 A 1 HETATM 46 H H041 XUZ . . . C 3 18.536 -11.481 -29.532 1 117.27 ? H041 XUZ 1101 A 1 HETATM 47 H H081 XUZ . . . C 3 18.585 -14.465 -33.062 1 111.09 ? H081 XUZ 1101 A 1 HETATM 48 H H091 XUZ . . . C 3 16.78 -15.607 -30.208 1 120.96 ? H091 XUZ 1101 A 1 HETATM 49 H H141 XUZ . . . C 3 16.879 -19.07 -33.822 1 110.96 ? H141 XUZ 1101 A 1 HETATM 50 H H161 XUZ . . . C 3 14.64 -15.858 -34.757 1 132.03 ? H161 XUZ 1101 A 1 HETATM 51 H H251 XUZ . . . C 3 13.64 -8.524 -30.788 1 118.31 ? H251 XUZ 1101 A 1 HETATM 52 H H271 XUZ . . . C 3 13.396 -12.362 -29.629 1 117.34 ? H271 XUZ 1101 A 1 HETATM 53 H H341 XUZ . . . C 3 16.955 -18.967 -36.446 1 143.09 ? H341 XUZ 1101 A 1 HETATM 54 H H351 XUZ . . . C 3 16.237 -20.116 -38.278 1 154.29 ? H351 XUZ 1101 A 1 HETATM 55 H H381 XUZ . . . C 3 11.513 -20.388 -39.339 1 142.57 ? H381 XUZ 1101 A 1 HETATM 56 H H101 XUZ . . . C 3 18.8 -16.804 -29.871 1 131.7 ? H101 XUZ 1101 A 1 HETATM 57 H H181 XUZ . . . C 3 15.719 -13.553 -33.206 1 114.63 ? H181 XUZ 1101 A 1 # _model_server_stats.io_time_ms 230 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 57 #