data_8TSH # _model_server_result.job_id cjw_PioSxuoEsMeYZEC2tA _model_server_result.datetime_utc '2024-11-21 14:12:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tsh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 8TSH # _exptl.entry_id 8TSH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TSH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 80 E CYS 77 1_555 L SG CYS 141 L CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 E SG CYS 141 E CYS 138 1_555 F SG CYS 80 F CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 G SG CYS 141 G CYS 138 1_555 H SG CYS 80 H CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 H SG CYS 141 H CYS 138 1_555 I SG CYS 80 I CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 I SG CYS 141 I CYS 138 1_555 J SG CYS 80 J CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 K SG CYS 141 K CYS 138 1_555 L SG CYS 80 L CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc1 B OG SER 45 B SER 45 1_555 P MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 O O2B ATP . B ATP 301 1_555 P MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8TSH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ATP A 1 301 301 ATP ATP . N 5 MG A 1 302 302 MG MG . O 4 ATP B 1 301 301 ATP ATP . P 5 MG B 1 302 302 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 4 197.577 184.989 240.823 1 78.41 ? PG ATP 301 B 1 HETATM 2 O O1G ATP . . . O 4 198.982 185.475 240.762 1 85.3 ? O1G ATP 301 B 1 HETATM 3 O O2G ATP . . . O 4 197.258 184.199 242.092 1 79.81 ? O2G ATP 301 B 1 HETATM 4 O O3G ATP . . . O 4 196.537 186.094 240.637 1 76.07 ? O3G ATP 301 B 1 HETATM 5 P PB ATP . . . O 4 196.495 182.63 239.357 1 77.35 ? PB ATP 301 B 1 HETATM 6 O O1B ATP . . . O 4 197.126 181.471 240.013 1 75.8 ? O1B ATP 301 B 1 HETATM 7 O O2B ATP . . . O 4 195.04 182.897 239.734 1 77.18 ? O2B ATP 301 B 1 HETATM 8 O O3B ATP . . . O 4 197.292 183.969 239.635 1 83.54 ? O3B ATP 301 B 1 HETATM 9 P PA ATP . . . O 4 196.408 181.398 236.672 1 80.57 ? PA ATP 301 B 1 HETATM 10 O O1A ATP . . . O 4 196.398 181.965 235.31 1 81.52 ? O1A ATP 301 B 1 HETATM 11 O O2A ATP . . . O 4 195.177 180.577 237.043 1 80.82 ? O2A ATP 301 B 1 HETATM 12 O O3A ATP . . . O 4 196.562 182.532 237.77 1 82.74 ? O3A ATP 301 B 1 HETATM 13 O O5' ATP . . . O 4 197.683 180.496 236.893 1 80.26 ? O5' ATP 301 B 1 HETATM 14 C C5' ATP . . . O 4 197.652 179.08 236.619 1 80.47 ? C5' ATP 301 B 1 HETATM 15 C C4' ATP . . . O 4 198.796 178.714 235.705 1 74.38 ? C4' ATP 301 B 1 HETATM 16 O O4' ATP . . . O 4 198.332 178.677 234.336 1 79.41 ? O4' ATP 301 B 1 HETATM 17 C C3' ATP . . . O 4 199.994 179.664 235.732 1 76.01 ? C3' ATP 301 B 1 HETATM 18 O O3' ATP . . . O 4 201.216 178.936 235.689 1 86.66 ? O3' ATP 301 B 1 HETATM 19 C C2' ATP . . . O 4 199.795 180.507 234.47 1 77.63 ? C2' ATP 301 B 1 HETATM 20 O O2' ATP . . . O 4 201.034 180.963 233.938 1 82.14 ? O2' ATP 301 B 1 HETATM 21 C C1' ATP . . . O 4 199.159 179.488 233.528 1 77.57 ? C1' ATP 301 B 1 HETATM 22 N N9 ATP . . . O 4 198.339 180.078 232.476 1 78.99 ? N9 ATP 301 B 1 HETATM 23 C C8 ATP . . . O 4 197.204 180.829 232.637 1 81.77 ? C8 ATP 301 B 1 HETATM 24 N N7 ATP . . . O 4 196.665 181.233 231.512 1 84.44 ? N7 ATP 301 B 1 HETATM 25 C C5 ATP . . . O 4 197.505 180.71 230.541 1 83.81 ? C5 ATP 301 B 1 HETATM 26 C C6 ATP . . . O 4 197.488 180.776 229.134 1 82.85 ? C6 ATP 301 B 1 HETATM 27 N N6 ATP . . . O 4 196.556 181.427 228.431 1 79.83 ? N6 ATP 301 B 1 HETATM 28 N N1 ATP . . . O 4 198.475 180.143 228.464 1 82.97 ? N1 ATP 301 B 1 HETATM 29 C C2 ATP . . . O 4 199.409 179.491 229.16 1 83.09 ? C2 ATP 301 B 1 HETATM 30 N N3 ATP . . . O 4 199.529 179.361 230.483 1 82.81 ? N3 ATP 301 B 1 HETATM 31 C C4 ATP . . . O 4 198.541 179.997 231.121 1 81.71 ? C4 ATP 301 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #