data_8TU9
#
_model_server_result.job_id            daa_-HOltXhwLmEYQkdFaA 
_model_server_result.datetime_utc      '2024-12-26 18:50:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tu9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":702}' 
#
_entry.id    8TU9 
#
_exptl.entry_id    8TU9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TU9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TU9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 344 A CYS 76 1_555 A SG CYS 347 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 602 A CYS 334 1_555 B SG CYS 602 B CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 683 A CYS 415 1_555 A SG CYS 702 A CYS 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 B SG CYS 344 B CYS 76 1_555 B SG CYS 347 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 683 B CYS 415 1_555 B SG CYS 702 B CYS 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A ND2 ASN 382 A ASN 114 1_555 F C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale2 A ND2 ASN 402 A ASN 134 1_555 D C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale3 A ND2 ASN 701 A ASN 433 1_555 E C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale4 B ND2 ASN 382 B ASN 114 1_555 J C1 NAG . B NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale5 B ND2 ASN 402 B ASN 134 1_555 H C1 NAG . B NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale6 B ND2 ASN 701 B ASN 433 1_555 I C1 NAG . B NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 326 n n 
C1 O1 NAG sing 327 n n 
C1 O5 NAG sing 328 n n 
C1 H1 NAG sing 329 n n 
C2 C3 NAG sing 330 n n 
C2 N2 NAG sing 331 n n 
C2 H2 NAG sing 332 n n 
C3 C4 NAG sing 333 n n 
C3 O3 NAG sing 334 n n 
C3 H3 NAG sing 335 n n 
C4 C5 NAG sing 336 n n 
C4 O4 NAG sing 337 n n 
C4 H4 NAG sing 338 n n 
C5 C6 NAG sing 339 n n 
C5 O5 NAG sing 340 n n 
C5 H5 NAG sing 341 n n 
C6 O6 NAG sing 342 n n 
C6 H61 NAG sing 343 n n 
C6 H62 NAG sing 344 n n 
C7 C8 NAG sing 345 n n 
C7 N2 NAG sing 346 n n 
C7 O7 NAG doub 347 n n 
C8 H81 NAG sing 348 n n 
C8 H82 NAG sing 349 n n 
C8 H83 NAG sing 350 n n 
N2 HN2 NAG sing 351 n n 
O1 HO1 NAG sing 352 n n 
O3 HO3 NAG sing 353 n n 
O4 HO4 NAG sing 354 n n 
O6 HO6 NAG sing 355 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TU9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACO A 1 701 701 ACO ACO . 
D 3 NAG A 1 702 702 NAG NAG . 
E 3 NAG A 1 703 703 NAG NAG . 
F 3 NAG A 1 704 704 NAG NAG . 
G 2 ACO B 1 701 701 ACO ACO . 
H 3 NAG B 1 702 702 NAG NAG . 
I 3 NAG B 1 703 703 NAG NAG . 
J 3 NAG B 1 704 704 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 3 174.662 127.685 114.61 1 65.13 ? C1 NAG 702 B 1 
HETATM 2 C C2 NAG . . . H 3 174.502 127.494 113.091 1 65.13 ? C2 NAG 702 B 1 
HETATM 3 C C3 NAG . . . H 3 174.91 128.768 112.36 1 65.13 ? C3 NAG 702 B 1 
HETATM 4 C C4 NAG . . . H 3 174.113 129.951 112.888 1 65.13 ? C4 NAG 702 B 1 
HETATM 5 C C5 NAG . . . H 3 174.28 130.073 114.402 1 65.13 ? C5 NAG 702 B 1 
HETATM 6 C C6 NAG . . . H 3 173.431 131.167 115.002 1 65.13 ? C6 NAG 702 B 1 
HETATM 7 C C7 NAG . . . H 3 174.957 125.615 111.57 1 65.13 ? C7 NAG 702 B 1 
HETATM 8 C C8 NAG . . . H 3 175.92 124.528 111.205 1 65.13 ? C8 NAG 702 B 1 
HETATM 9 N N2 NAG . . . H 3 175.299 126.372 112.619 1 65.13 ? N2 NAG 702 B 1 
HETATM 10 O O3 NAG . . . H 3 174.675 128.621 110.964 1 65.13 ? O3 NAG 702 B 1 
HETATM 11 O O4 NAG . . . H 3 174.56 131.149 112.264 1 65.13 ? O4 NAG 702 B 1 
HETATM 12 O O5 NAG . . . H 3 173.9 128.843 115.043 1 65.13 ? O5 NAG 702 B 1 
HETATM 13 O O6 NAG . . . H 3 173.681 132.412 114.363 1 65.13 ? O6 NAG 702 B 1 
HETATM 14 O O7 NAG . . . H 3 173.921 125.805 110.94 1 65.13 ? O7 NAG 702 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#