data_8TV6 # _model_server_result.job_id 9toIQfAv40Bduk2CAHW_MA _model_server_result.datetime_utc '2025-01-10 18:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8TV6 # _exptl.entry_id 8TV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.455 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,6R)-6-{[3-(methoxycarbonyl)-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophen-2-yl]carbamoyl}cyclohex-3-ene-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 95.59 _cell.angle_beta 98.13 _cell.angle_gamma 90.44 _cell.entry_id 8TV6 _cell.length_a 30.216 _cell.length_b 37.765 _cell.length_c 64.085 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N O5 S' _chem_comp.formula_weight 377.455 _chem_comp.id V83 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,6R)-6-{[3-(methoxycarbonyl)-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophen-2-yl]carbamoyl}cyclohex-3-ene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAK V83 sing 359 n n CAL CAM V83 doub 360 n n CAK CAJ V83 sing 361 n n CAM CAN V83 sing 362 n n OAI CAH V83 doub 363 n n CAJ CAH V83 sing 364 n n CAJ CAO V83 sing 365 n n CAH NAG V83 sing 366 n n CAN CAO V83 sing 367 n n SAS CAF V83 sing 368 n y SAS CAT V83 sing 369 n y CAO CAP V83 sing 370 n n NAG CAF V83 sing 371 n n CAF CAE V83 doub 372 n y CAZ CAT V83 sing 373 n n CAZ CAY V83 sing 374 n n CAT CAU V83 doub 375 n y CAE CAU V83 sing 376 n y CAE CAC V83 sing 377 n n CAU CAV V83 sing 378 n n CAA OAB V83 sing 379 n n CAP OAR V83 doub 380 n n CAP OAQ V83 sing 381 n n OAB CAC V83 sing 382 n n CAC OAD V83 doub 383 n n CAY CAX V83 sing 384 n n CAV CAW V83 sing 385 n n CAX CAW V83 sing 386 n n OAQ H1 V83 sing 387 n n CAO H2 V83 sing 388 n n CAN H3 V83 sing 389 n n CAN H4 V83 sing 390 n n CAM H5 V83 sing 391 n n CAL H6 V83 sing 392 n n CAK H7 V83 sing 393 n n CAK H8 V83 sing 394 n n CAJ H9 V83 sing 395 n n NAG H10 V83 sing 396 n n CAZ H11 V83 sing 397 n n CAZ H12 V83 sing 398 n n CAY H13 V83 sing 399 n n CAY H14 V83 sing 400 n n CAX H15 V83 sing 401 n n CAX H16 V83 sing 402 n n CAW H17 V83 sing 403 n n CAW H18 V83 sing 404 n n CAV H19 V83 sing 405 n n CAV H20 V83 sing 406 n n CAA H21 V83 sing 407 n n CAA H22 V83 sing 408 n n CAA H23 V83 sing 409 n n # _atom_sites.entry_id 8TV6 _atom_sites.fract_transf_matrix[1][1] 0.033095 _atom_sites.fract_transf_matrix[1][2] 0.000255 _atom_sites.fract_transf_matrix[1][3] 0.004774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02648 _atom_sites.fract_transf_matrix[2][3] 0.002647 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 201 201 PEG PEG . D 3 V83 B 1 201 201 V83 DRG . E 4 GOL B 1 202 203 GOL GOL . F 2 PEG B 1 203 204 PEG PEG . G 5 HOH A 1 301 244 HOH HOH . G 5 HOH A 2 302 254 HOH HOH . G 5 HOH A 3 303 108 HOH HOH . G 5 HOH A 4 304 189 HOH HOH . G 5 HOH A 5 305 80 HOH HOH . G 5 HOH A 6 306 193 HOH HOH . G 5 HOH A 7 307 253 HOH HOH . G 5 HOH A 8 308 75 HOH HOH . G 5 HOH A 9 309 119 HOH HOH . G 5 HOH A 10 310 136 HOH HOH . G 5 HOH A 11 311 174 HOH HOH . G 5 HOH A 12 312 63 HOH HOH . G 5 HOH A 13 313 196 HOH HOH . G 5 HOH A 14 314 104 HOH HOH . G 5 HOH A 15 315 102 HOH HOH . G 5 HOH A 16 316 123 HOH HOH . G 5 HOH A 17 317 233 HOH HOH . G 5 HOH A 18 318 84 HOH HOH . G 5 HOH A 19 319 28 HOH HOH . G 5 HOH A 20 320 100 HOH HOH . G 5 HOH A 21 321 66 HOH HOH . G 5 HOH A 22 322 158 HOH HOH . G 5 HOH A 23 323 114 HOH HOH . G 5 HOH A 24 324 74 HOH HOH . G 5 HOH A 25 325 90 HOH HOH . G 5 HOH A 26 326 50 HOH HOH . G 5 HOH A 27 327 226 HOH HOH . G 5 HOH A 28 328 129 HOH HOH . G 5 HOH A 29 329 215 HOH HOH . G 5 HOH A 30 330 140 HOH HOH . G 5 HOH A 31 331 25 HOH HOH . G 5 HOH A 32 332 42 HOH HOH . G 5 HOH A 33 333 31 HOH HOH . G 5 HOH A 34 334 13 HOH HOH . G 5 HOH A 35 335 141 HOH HOH . G 5 HOH A 36 336 246 HOH HOH . G 5 HOH A 37 337 22 HOH HOH . G 5 HOH A 38 338 1 HOH HOH . G 5 HOH A 39 339 8 HOH HOH . G 5 HOH A 40 340 26 HOH HOH . G 5 HOH A 41 341 15 HOH HOH . G 5 HOH A 42 342 27 HOH HOH . G 5 HOH A 43 343 177 HOH HOH . G 5 HOH A 44 344 243 HOH HOH . G 5 HOH A 45 345 181 HOH HOH . G 5 HOH A 46 346 93 HOH HOH . G 5 HOH A 47 347 6 HOH HOH . G 5 HOH A 48 348 18 HOH HOH . G 5 HOH A 49 349 110 HOH HOH . G 5 HOH A 50 350 96 HOH HOH . G 5 HOH A 51 351 197 HOH HOH . G 5 HOH A 52 352 16 HOH HOH . G 5 HOH A 53 353 70 HOH HOH . G 5 HOH A 54 354 86 HOH HOH . G 5 HOH A 55 355 120 HOH HOH . G 5 HOH A 56 356 37 HOH HOH . G 5 HOH A 57 357 155 HOH HOH . G 5 HOH A 58 358 9 HOH HOH . G 5 HOH A 59 359 73 HOH HOH . G 5 HOH A 60 360 20 HOH HOH . G 5 HOH A 61 361 132 HOH HOH . G 5 HOH A 62 362 252 HOH HOH . G 5 HOH A 63 363 228 HOH HOH . G 5 HOH A 64 364 121 HOH HOH . G 5 HOH A 65 365 41 HOH HOH . G 5 HOH A 66 366 152 HOH HOH . G 5 HOH A 67 367 52 HOH HOH . G 5 HOH A 68 368 32 HOH HOH . G 5 HOH A 69 369 106 HOH HOH . G 5 HOH A 70 370 154 HOH HOH . G 5 HOH A 71 371 88 HOH HOH . G 5 HOH A 72 372 145 HOH HOH . G 5 HOH A 73 373 224 HOH HOH . G 5 HOH A 74 374 62 HOH HOH . G 5 HOH A 75 375 146 HOH HOH . G 5 HOH A 76 376 83 HOH HOH . G 5 HOH A 77 377 89 HOH HOH . G 5 HOH A 78 378 33 HOH HOH . G 5 HOH A 79 379 97 HOH HOH . G 5 HOH A 80 380 107 HOH HOH . G 5 HOH A 81 381 167 HOH HOH . G 5 HOH A 82 382 187 HOH HOH . G 5 HOH A 83 383 188 HOH HOH . G 5 HOH A 84 384 227 HOH HOH . G 5 HOH A 85 385 125 HOH HOH . G 5 HOH A 86 386 65 HOH HOH . G 5 HOH A 87 387 87 HOH HOH . G 5 HOH A 88 388 232 HOH HOH . G 5 HOH A 89 389 144 HOH HOH . G 5 HOH A 90 390 230 HOH HOH . G 5 HOH A 91 391 170 HOH HOH . G 5 HOH A 92 392 213 HOH HOH . G 5 HOH A 93 393 142 HOH HOH . G 5 HOH A 94 394 211 HOH HOH . G 5 HOH A 95 395 117 HOH HOH . G 5 HOH A 96 396 186 HOH HOH . G 5 HOH A 97 397 220 HOH HOH . G 5 HOH A 98 398 205 HOH HOH . G 5 HOH A 99 399 161 HOH HOH . G 5 HOH A 100 400 194 HOH HOH . G 5 HOH A 101 401 258 HOH HOH . G 5 HOH A 102 402 38 HOH HOH . G 5 HOH A 103 403 163 HOH HOH . G 5 HOH A 104 404 109 HOH HOH . G 5 HOH A 105 405 216 HOH HOH . G 5 HOH A 106 406 239 HOH HOH . G 5 HOH A 107 407 56 HOH HOH . H 5 HOH B 1 301 250 HOH HOH . H 5 HOH B 2 302 68 HOH HOH . H 5 HOH B 3 303 199 HOH HOH . H 5 HOH B 4 304 256 HOH HOH . H 5 HOH B 5 305 248 HOH HOH . H 5 HOH B 6 306 77 HOH HOH . H 5 HOH B 7 307 128 HOH HOH . H 5 HOH B 8 308 98 HOH HOH . H 5 HOH B 9 309 17 HOH HOH . H 5 HOH B 10 310 94 HOH HOH . H 5 HOH B 11 311 113 HOH HOH . H 5 HOH B 12 312 225 HOH HOH . H 5 HOH B 13 313 115 HOH HOH . H 5 HOH B 14 314 48 HOH HOH . H 5 HOH B 15 315 198 HOH HOH . H 5 HOH B 16 316 45 HOH HOH . H 5 HOH B 17 317 175 HOH HOH . H 5 HOH B 18 318 46 HOH HOH . H 5 HOH B 19 319 24 HOH HOH . H 5 HOH B 20 320 190 HOH HOH . H 5 HOH B 21 321 101 HOH HOH . H 5 HOH B 22 322 127 HOH HOH . H 5 HOH B 23 323 35 HOH HOH . H 5 HOH B 24 324 49 HOH HOH . H 5 HOH B 25 325 251 HOH HOH . H 5 HOH B 26 326 180 HOH HOH . H 5 HOH B 27 327 81 HOH HOH . H 5 HOH B 28 328 47 HOH HOH . H 5 HOH B 29 329 137 HOH HOH . H 5 HOH B 30 330 4 HOH HOH . H 5 HOH B 31 331 2 HOH HOH . H 5 HOH B 32 332 23 HOH HOH . H 5 HOH B 33 333 149 HOH HOH . H 5 HOH B 34 334 76 HOH HOH . H 5 HOH B 35 335 69 HOH HOH . H 5 HOH B 36 336 71 HOH HOH . H 5 HOH B 37 337 222 HOH HOH . H 5 HOH B 38 338 95 HOH HOH . H 5 HOH B 39 339 58 HOH HOH . H 5 HOH B 40 340 212 HOH HOH . H 5 HOH B 41 341 82 HOH HOH . H 5 HOH B 42 342 12 HOH HOH . H 5 HOH B 43 343 182 HOH HOH . H 5 HOH B 44 344 218 HOH HOH . H 5 HOH B 45 345 160 HOH HOH . H 5 HOH B 46 346 229 HOH HOH . H 5 HOH B 47 347 162 HOH HOH . H 5 HOH B 48 348 61 HOH HOH . H 5 HOH B 49 349 30 HOH HOH . H 5 HOH B 50 350 36 HOH HOH . H 5 HOH B 51 351 238 HOH HOH . H 5 HOH B 52 352 148 HOH HOH . H 5 HOH B 53 353 43 HOH HOH . H 5 HOH B 54 354 116 HOH HOH . H 5 HOH B 55 355 14 HOH HOH . H 5 HOH B 56 356 67 HOH HOH . H 5 HOH B 57 357 40 HOH HOH . H 5 HOH B 58 358 165 HOH HOH . H 5 HOH B 59 359 51 HOH HOH . H 5 HOH B 60 360 29 HOH HOH . H 5 HOH B 61 361 64 HOH HOH . H 5 HOH B 62 362 105 HOH HOH . H 5 HOH B 63 363 78 HOH HOH . H 5 HOH B 64 364 153 HOH HOH . H 5 HOH B 65 365 249 HOH HOH . H 5 HOH B 66 366 173 HOH HOH . H 5 HOH B 67 367 122 HOH HOH . H 5 HOH B 68 368 151 HOH HOH . H 5 HOH B 69 369 191 HOH HOH . H 5 HOH B 70 370 179 HOH HOH . H 5 HOH B 71 371 241 HOH HOH . H 5 HOH B 72 372 168 HOH HOH . H 5 HOH B 73 373 53 HOH HOH . H 5 HOH B 74 374 221 HOH HOH . H 5 HOH B 75 375 55 HOH HOH . H 5 HOH B 76 376 103 HOH HOH . H 5 HOH B 77 377 178 HOH HOH . H 5 HOH B 78 378 10 HOH HOH . H 5 HOH B 79 379 257 HOH HOH . H 5 HOH B 80 380 59 HOH HOH . H 5 HOH B 81 381 185 HOH HOH . H 5 HOH B 82 382 39 HOH HOH . H 5 HOH B 83 383 11 HOH HOH . H 5 HOH B 84 384 138 HOH HOH . H 5 HOH B 85 385 19 HOH HOH . H 5 HOH B 86 386 99 HOH HOH . H 5 HOH B 87 387 176 HOH HOH . H 5 HOH B 88 388 91 HOH HOH . H 5 HOH B 89 389 164 HOH HOH . H 5 HOH B 90 390 60 HOH HOH . H 5 HOH B 91 391 223 HOH HOH . H 5 HOH B 92 392 217 HOH HOH . H 5 HOH B 93 393 54 HOH HOH . H 5 HOH B 94 394 219 HOH HOH . H 5 HOH B 95 395 255 HOH HOH . H 5 HOH B 96 396 209 HOH HOH . H 5 HOH B 97 397 44 HOH HOH . H 5 HOH B 98 398 85 HOH HOH . H 5 HOH B 99 399 183 HOH HOH . H 5 HOH B 100 400 203 HOH HOH . H 5 HOH B 101 401 130 HOH HOH . H 5 HOH B 102 402 118 HOH HOH . H 5 HOH B 103 403 207 HOH HOH . H 5 HOH B 104 404 202 HOH HOH . H 5 HOH B 105 405 139 HOH HOH . H 5 HOH B 106 406 192 HOH HOH . H 5 HOH B 107 407 143 HOH HOH . H 5 HOH B 108 408 208 HOH HOH . H 5 HOH B 109 409 204 HOH HOH . H 5 HOH B 110 410 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAQ V83 . . . D 3 -1.755 -12.346 22.053 1 25.7 ? OAQ V83 201 B 1 HETATM 2 C CAP V83 . . . D 3 -0.979 -12.081 21.102 1 30.81 ? CAP V83 201 B 1 HETATM 3 O OAR V83 . . . D 3 0.188 -11.636 21.229 1 25.11 ? OAR V83 201 B 1 HETATM 4 C CAO V83 . . . D 3 -1.598 -12.206 19.652 1 34.11 ? CAO V83 201 B 1 HETATM 5 C CAN V83 . . . D 3 -1.8 -13.647 19.183 1 35.73 ? CAN V83 201 B 1 HETATM 6 C CAM V83 . . . D 3 -2.557 -13.555 18.009 1 36.05 ? CAM V83 201 B 1 HETATM 7 C CAL V83 . . . D 3 -2.13 -12.701 16.986 1 34.96 ? CAL V83 201 B 1 HETATM 8 C CAK V83 . . . D 3 -0.944 -11.995 17.103 1 36.4 ? CAK V83 201 B 1 HETATM 9 C CAJ V83 . . . D 3 -0.804 -11.423 18.585 1 34.25 ? CAJ V83 201 B 1 HETATM 10 C CAH V83 . . . D 3 -1.337 -9.991 18.722 1 35.04 ? CAH V83 201 B 1 HETATM 11 O OAI V83 . . . D 3 -2.32 -9.632 18.082 1 35.67 ? OAI V83 201 B 1 HETATM 12 N NAG V83 . . . D 3 -0.726 -9.271 19.698 1 34.31 ? NAG V83 201 B 1 HETATM 13 C CAF V83 . . . D 3 -1.088 -8 19.98 1 33.8 ? CAF V83 201 B 1 HETATM 14 S SAS V83 . . . D 3 -2.537 -7.326 19.356 1 33.1 ? SAS V83 201 B 1 HETATM 15 C CAT V83 . . . D 3 -2.228 -5.794 20.143 1 33.6 ? CAT V83 201 B 1 HETATM 16 C CAZ V83 . . . D 3 -3.125 -4.721 20.027 1 33.96 ? CAZ V83 201 B 1 HETATM 17 C CAY V83 . . . D 3 -3.671 -4.477 21.392 1 34.82 ? CAY V83 201 B 1 HETATM 18 C CAX V83 . . . D 3 -2.672 -3.59 22.15 1 34.37 ? CAX V83 201 B 1 HETATM 19 C CAW V83 . . . D 3 -1.555 -4.487 22.711 1 34.38 ? CAW V83 201 B 1 HETATM 20 C CAV V83 . . . D 3 -0.608 -4.71 21.582 1 34.3 ? CAV V83 201 B 1 HETATM 21 C CAU V83 . . . D 3 -1.073 -5.855 20.854 1 33.16 ? CAU V83 201 B 1 HETATM 22 C CAE V83 . . . D 3 -0.428 -7.076 20.766 1 31.44 ? CAE V83 201 B 1 HETATM 23 C CAC V83 . . . D 3 0.762 -7.422 21.364 1 30.95 ? CAC V83 201 B 1 HETATM 24 O OAD V83 . . . D 3 1.444 -6.648 22.043 1 28.54 ? OAD V83 201 B 1 HETATM 25 O OAB V83 . . . D 3 1.157 -8.737 21.184 1 32.24 ? OAB V83 201 B 1 HETATM 26 C CAA V83 . . . D 3 2.564 -8.958 20.976 1 30.47 ? CAA V83 201 B 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #