data_8TVC # _model_server_result.job_id q9sqDPK5nFrlcE16Jw6bUQ _model_server_result.datetime_utc '2024-11-07 04:30:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tvc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8TVC # _exptl.entry_id 8TVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TVC _cell.length_a 55.429 _cell.length_b 68.461 _cell.length_c 126.735 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y+1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 34.2305 -63.3675 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 72 A HIS 65 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A SG CYS 104 A CYS 97 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A SG CYS 107 A CYS 100 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A ND1 HIS 260 A HIS 257 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 A SG CYS 290 A CYS 287 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc6 A SG CYS 293 A CYS 290 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc7 C ZN ZN . A ZN 401 1_555 F O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 D ZN ZN . A ZN 402 1_555 E O3 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8TVC _atom_sites.fract_transf_matrix[1][1] 0.018041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 805 ZN ZN . D 3 ZN A 1 402 806 ZN ZN . E 4 PO4 A 1 403 901 PO4 PO4 . F 5 HOH A 1 501 53 HOH HOH . F 5 HOH A 2 502 31 HOH HOH . F 5 HOH A 3 503 125 HOH HOH . F 5 HOH A 4 504 138 HOH HOH . F 5 HOH A 5 505 182 HOH HOH . F 5 HOH A 6 506 79 HOH HOH . F 5 HOH A 7 507 84 HOH HOH . F 5 HOH A 8 508 168 HOH HOH . F 5 HOH A 9 509 99 HOH HOH . F 5 HOH A 10 510 38 HOH HOH . F 5 HOH A 11 511 15 HOH HOH . F 5 HOH A 12 512 163 HOH HOH . F 5 HOH A 13 513 94 HOH HOH . F 5 HOH A 14 514 57 HOH HOH . F 5 HOH A 15 515 47 HOH HOH . F 5 HOH A 16 516 91 HOH HOH . F 5 HOH A 17 517 8 HOH HOH . F 5 HOH A 18 518 12 HOH HOH . F 5 HOH A 19 519 51 HOH HOH . F 5 HOH A 20 520 183 HOH HOH . F 5 HOH A 21 521 105 HOH HOH . F 5 HOH A 22 522 151 HOH HOH . F 5 HOH A 23 523 121 HOH HOH . F 5 HOH A 24 524 238 HOH HOH . F 5 HOH A 25 525 2 HOH HOH . F 5 HOH A 26 526 146 HOH HOH . F 5 HOH A 27 527 110 HOH HOH . F 5 HOH A 28 528 87 HOH HOH . F 5 HOH A 29 529 5 HOH HOH . F 5 HOH A 30 530 179 HOH HOH . F 5 HOH A 31 531 218 HOH HOH . F 5 HOH A 32 532 49 HOH HOH . F 5 HOH A 33 533 148 HOH HOH . F 5 HOH A 34 534 141 HOH HOH . F 5 HOH A 35 535 3 HOH HOH . F 5 HOH A 36 536 100 HOH HOH . F 5 HOH A 37 537 246 HOH HOH . F 5 HOH A 38 538 4 HOH HOH . F 5 HOH A 39 539 25 HOH HOH . F 5 HOH A 40 540 257 HOH HOH . F 5 HOH A 41 541 220 HOH HOH . F 5 HOH A 42 542 17 HOH HOH . F 5 HOH A 43 543 1 HOH HOH . F 5 HOH A 44 544 191 HOH HOH . F 5 HOH A 45 545 22 HOH HOH . F 5 HOH A 46 546 135 HOH HOH . F 5 HOH A 47 547 46 HOH HOH . F 5 HOH A 48 548 92 HOH HOH . F 5 HOH A 49 549 34 HOH HOH . F 5 HOH A 50 550 73 HOH HOH . F 5 HOH A 51 551 116 HOH HOH . F 5 HOH A 52 552 172 HOH HOH . F 5 HOH A 53 553 234 HOH HOH . F 5 HOH A 54 554 98 HOH HOH . F 5 HOH A 55 555 188 HOH HOH . F 5 HOH A 56 556 103 HOH HOH . F 5 HOH A 57 557 134 HOH HOH . F 5 HOH A 58 558 184 HOH HOH . F 5 HOH A 59 559 19 HOH HOH . F 5 HOH A 60 560 6 HOH HOH . F 5 HOH A 61 561 143 HOH HOH . F 5 HOH A 62 562 76 HOH HOH . F 5 HOH A 63 563 97 HOH HOH . F 5 HOH A 64 564 180 HOH HOH . F 5 HOH A 65 565 95 HOH HOH . F 5 HOH A 66 566 207 HOH HOH . F 5 HOH A 67 567 107 HOH HOH . F 5 HOH A 68 568 7 HOH HOH . F 5 HOH A 69 569 33 HOH HOH . F 5 HOH A 70 570 142 HOH HOH . F 5 HOH A 71 571 159 HOH HOH . F 5 HOH A 72 572 153 HOH HOH . F 5 HOH A 73 573 67 HOH HOH . F 5 HOH A 74 574 56 HOH HOH . F 5 HOH A 75 575 106 HOH HOH . F 5 HOH A 76 576 70 HOH HOH . F 5 HOH A 77 577 157 HOH HOH . F 5 HOH A 78 578 81 HOH HOH . F 5 HOH A 79 579 26 HOH HOH . F 5 HOH A 80 580 193 HOH HOH . F 5 HOH A 81 581 228 HOH HOH . F 5 HOH A 82 582 254 HOH HOH . F 5 HOH A 83 583 128 HOH HOH . F 5 HOH A 84 584 32 HOH HOH . F 5 HOH A 85 585 219 HOH HOH . F 5 HOH A 86 586 59 HOH HOH . F 5 HOH A 87 587 28 HOH HOH . F 5 HOH A 88 588 78 HOH HOH . F 5 HOH A 89 589 13 HOH HOH . F 5 HOH A 90 590 124 HOH HOH . F 5 HOH A 91 591 50 HOH HOH . F 5 HOH A 92 592 20 HOH HOH . F 5 HOH A 93 593 208 HOH HOH . F 5 HOH A 94 594 21 HOH HOH . F 5 HOH A 95 595 239 HOH HOH . F 5 HOH A 96 596 231 HOH HOH . F 5 HOH A 97 597 44 HOH HOH . F 5 HOH A 98 598 273 HOH HOH . F 5 HOH A 99 599 204 HOH HOH . F 5 HOH A 100 600 65 HOH HOH . F 5 HOH A 101 601 248 HOH HOH . F 5 HOH A 102 602 197 HOH HOH . F 5 HOH A 103 603 83 HOH HOH . F 5 HOH A 104 604 68 HOH HOH . F 5 HOH A 105 605 24 HOH HOH . F 5 HOH A 106 606 9 HOH HOH . F 5 HOH A 107 607 190 HOH HOH . F 5 HOH A 108 608 72 HOH HOH . F 5 HOH A 109 609 41 HOH HOH . F 5 HOH A 110 610 29 HOH HOH . F 5 HOH A 111 611 16 HOH HOH . F 5 HOH A 112 612 109 HOH HOH . F 5 HOH A 113 613 174 HOH HOH . F 5 HOH A 114 614 52 HOH HOH . F 5 HOH A 115 615 36 HOH HOH . F 5 HOH A 116 616 90 HOH HOH . F 5 HOH A 117 617 75 HOH HOH . F 5 HOH A 118 618 229 HOH HOH . F 5 HOH A 119 619 58 HOH HOH . F 5 HOH A 120 620 129 HOH HOH . F 5 HOH A 121 621 30 HOH HOH . F 5 HOH A 122 622 165 HOH HOH . F 5 HOH A 123 623 173 HOH HOH . F 5 HOH A 124 624 114 HOH HOH . F 5 HOH A 125 625 176 HOH HOH . F 5 HOH A 126 626 54 HOH HOH . F 5 HOH A 127 627 115 HOH HOH . F 5 HOH A 128 628 225 HOH HOH . F 5 HOH A 129 629 145 HOH HOH . F 5 HOH A 130 630 82 HOH HOH . F 5 HOH A 131 631 252 HOH HOH . F 5 HOH A 132 632 14 HOH HOH . F 5 HOH A 133 633 210 HOH HOH . F 5 HOH A 134 634 170 HOH HOH . F 5 HOH A 135 635 120 HOH HOH . F 5 HOH A 136 636 123 HOH HOH . F 5 HOH A 137 637 266 HOH HOH . F 5 HOH A 138 638 122 HOH HOH . F 5 HOH A 139 639 155 HOH HOH . F 5 HOH A 140 640 209 HOH HOH . F 5 HOH A 141 641 132 HOH HOH . F 5 HOH A 142 642 221 HOH HOH . F 5 HOH A 143 643 112 HOH HOH . F 5 HOH A 144 644 136 HOH HOH . F 5 HOH A 145 645 195 HOH HOH . F 5 HOH A 146 646 11 HOH HOH . F 5 HOH A 147 647 117 HOH HOH . F 5 HOH A 148 648 147 HOH HOH . F 5 HOH A 149 649 60 HOH HOH . F 5 HOH A 150 650 48 HOH HOH . F 5 HOH A 151 651 175 HOH HOH . F 5 HOH A 152 652 37 HOH HOH . F 5 HOH A 153 653 171 HOH HOH . F 5 HOH A 154 654 140 HOH HOH . F 5 HOH A 155 655 185 HOH HOH . F 5 HOH A 156 656 251 HOH HOH . F 5 HOH A 157 657 101 HOH HOH . F 5 HOH A 158 658 144 HOH HOH . F 5 HOH A 159 659 186 HOH HOH . F 5 HOH A 160 660 216 HOH HOH . F 5 HOH A 161 661 127 HOH HOH . F 5 HOH A 162 662 211 HOH HOH . F 5 HOH A 163 663 250 HOH HOH . F 5 HOH A 164 664 89 HOH HOH . F 5 HOH A 165 665 227 HOH HOH . F 5 HOH A 166 666 118 HOH HOH . F 5 HOH A 167 667 27 HOH HOH . F 5 HOH A 168 668 154 HOH HOH . F 5 HOH A 169 669 61 HOH HOH . F 5 HOH A 170 670 86 HOH HOH . F 5 HOH A 171 671 260 HOH HOH . F 5 HOH A 172 672 224 HOH HOH . F 5 HOH A 173 673 71 HOH HOH . F 5 HOH A 174 674 96 HOH HOH . F 5 HOH A 175 675 64 HOH HOH . F 5 HOH A 176 676 240 HOH HOH . F 5 HOH A 177 677 113 HOH HOH . F 5 HOH A 178 678 108 HOH HOH . F 5 HOH A 179 679 269 HOH HOH . F 5 HOH A 180 680 156 HOH HOH . F 5 HOH A 181 681 93 HOH HOH . F 5 HOH A 182 682 271 HOH HOH . F 5 HOH A 183 683 66 HOH HOH . F 5 HOH A 184 684 43 HOH HOH . F 5 HOH A 185 685 40 HOH HOH . F 5 HOH A 186 686 130 HOH HOH . F 5 HOH A 187 687 39 HOH HOH . F 5 HOH A 188 688 259 HOH HOH . F 5 HOH A 189 689 62 HOH HOH . F 5 HOH A 190 690 80 HOH HOH . F 5 HOH A 191 691 245 HOH HOH . F 5 HOH A 192 692 214 HOH HOH . F 5 HOH A 193 693 45 HOH HOH . F 5 HOH A 194 694 206 HOH HOH . F 5 HOH A 195 695 169 HOH HOH . F 5 HOH A 196 696 263 HOH HOH . F 5 HOH A 197 697 198 HOH HOH . F 5 HOH A 198 698 261 HOH HOH . F 5 HOH A 199 699 217 HOH HOH . F 5 HOH A 200 700 205 HOH HOH . F 5 HOH A 201 701 164 HOH HOH . F 5 HOH A 202 702 162 HOH HOH . F 5 HOH A 203 703 223 HOH HOH . F 5 HOH A 204 704 272 HOH HOH . F 5 HOH A 205 705 196 HOH HOH . F 5 HOH A 206 706 192 HOH HOH . F 5 HOH A 207 707 265 HOH HOH . F 5 HOH A 208 708 258 HOH HOH . F 5 HOH A 209 709 222 HOH HOH . F 5 HOH A 210 710 213 HOH HOH . F 5 HOH A 211 711 237 HOH HOH . F 5 HOH A 212 712 177 HOH HOH . F 5 HOH A 213 713 131 HOH HOH . F 5 HOH A 214 714 111 HOH HOH . F 5 HOH A 215 715 166 HOH HOH . F 5 HOH A 216 716 233 HOH HOH . F 5 HOH A 217 717 203 HOH HOH . F 5 HOH A 218 718 249 HOH HOH . F 5 HOH A 219 719 150 HOH HOH . F 5 HOH A 220 720 42 HOH HOH . F 5 HOH A 221 721 267 HOH HOH . F 5 HOH A 222 722 178 HOH HOH . F 5 HOH A 223 723 230 HOH HOH . F 5 HOH A 224 724 139 HOH HOH . F 5 HOH A 225 725 194 HOH HOH . F 5 HOH A 226 726 167 HOH HOH . F 5 HOH A 227 727 149 HOH HOH . F 5 HOH A 228 728 264 HOH HOH . F 5 HOH A 229 729 88 HOH HOH . F 5 HOH A 230 730 247 HOH HOH . F 5 HOH A 231 731 104 HOH HOH . F 5 HOH A 232 732 160 HOH HOH . F 5 HOH A 233 733 102 HOH HOH . F 5 HOH A 234 734 226 HOH HOH . F 5 HOH A 235 735 235 HOH HOH . F 5 HOH A 236 736 236 HOH HOH . F 5 HOH A 237 737 181 HOH HOH . F 5 HOH A 238 738 199 HOH HOH . F 5 HOH A 239 739 133 HOH HOH . F 5 HOH A 240 740 201 HOH HOH . F 5 HOH A 241 741 262 HOH HOH . F 5 HOH A 242 742 187 HOH HOH . F 5 HOH A 243 743 268 HOH HOH . F 5 HOH A 244 744 119 HOH HOH . F 5 HOH A 245 745 161 HOH HOH . F 5 HOH A 246 746 215 HOH HOH . F 5 HOH A 247 747 232 HOH HOH . F 5 HOH A 248 748 137 HOH HOH . F 5 HOH A 249 749 77 HOH HOH . F 5 HOH A 250 750 200 HOH HOH . F 5 HOH A 251 751 189 HOH HOH . G 5 HOH B 1 101 253 HOH HOH . G 5 HOH B 2 102 270 HOH HOH . G 5 HOH B 3 103 85 HOH HOH . G 5 HOH B 4 104 74 HOH HOH . G 5 HOH B 5 105 18 HOH HOH . G 5 HOH B 6 106 63 HOH HOH . G 5 HOH B 7 107 152 HOH HOH . G 5 HOH B 8 108 10 HOH HOH . G 5 HOH B 9 109 126 HOH HOH . G 5 HOH B 10 110 69 HOH HOH . G 5 HOH B 11 111 23 HOH HOH . G 5 HOH B 12 112 35 HOH HOH . G 5 HOH B 13 113 158 HOH HOH . G 5 HOH B 14 114 255 HOH HOH . G 5 HOH B 15 115 241 HOH HOH . G 5 HOH B 16 116 242 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.602 _atom_site.Cartn_y -10.636 _atom_site.Cartn_z -13.116 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 106 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #