data_8TW3 # _model_server_result.job_id '_dunNB_N36WDjoxUbQYMmQ' _model_server_result.datetime_utc '2024-11-17 00:16:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 8TW3 # _exptl.entry_id 8TW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TW3 _cell.length_a 80.26 _cell.length_b 115.61 _cell.length_c 158.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H 1 1 D,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 23 1_555 A SG CYS 115 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 69 A CYS 55 1_555 A SG CYS 123 A CYS 111 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 41 B CYS 23 1_555 B SG CYS 112 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 28 F CYS 28 1_555 C SG CYS 407 F CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 60 F CYS 60 1_555 C SG CYS 182 F CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 C SG CYS 283 F CYS 283 1_555 C SG CYS 311 F CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 C SG CYS 292 F CYS 292 1_555 C SG CYS 301 F CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 C SG CYS 326 F CYS 326 1_555 C SG CYS 335 F CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 C SG CYS 350 F CYS 350 1_555 C SG CYS 361 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 384 F CYS 384 1_555 C SG CYS 390 F CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 D SG CYS 28 X CYS 28 1_555 D SG CYS 407 X CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 D SG CYS 60 X CYS 60 1_555 D SG CYS 182 X CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 D SG CYS 283 X CYS 283 1_555 D SG CYS 311 X CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf14 D SG CYS 292 X CYS 292 1_555 D SG CYS 301 X CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 D SG CYS 326 X CYS 326 1_555 D SG CYS 335 X CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf16 D SG CYS 350 X CYS 350 1_555 D SG CYS 361 X CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf17 D SG CYS 384 X CYS 384 1_555 D SG CYS 390 X CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 E SG CYS 41 Y CYS 23 1_555 E SG CYS 115 Y CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 E SG CYS 69 Y CYS 55 1_555 E SG CYS 123 Y CYS 111 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf20 F SG CYS 41 Z CYS 23 1_555 F SG CYS 112 Z CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 C ND2 ASN 172 F ASN 172 1_555 H C1 NAG . F NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 D ND2 ASN 172 X ASN 172 1_555 J C1 NAG . X NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8TW3 _atom_sites.fract_transf_matrix[1][1] 0.01246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG F 1 601 429 NAG NAG . H 4 NAG F 1 602 430 NAG NAG . I 4 NAG X 1 601 429 NAG NAG . J 4 NAG X 1 602 430 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 14.293 -15.062 -79.998 1 66.18 ? C1 NAG 601 X 1 HETATM 2 C C2 NAG . . . I 4 12.987 -15.139 -80.771 1 81.43 ? C2 NAG 601 X 1 HETATM 3 C C3 NAG . . . I 4 13.274 -15.209 -82.266 1 92.37 ? C3 NAG 601 X 1 HETATM 4 C C4 NAG . . . I 4 14.137 -14.026 -82.687 1 92.24 ? C4 NAG 601 X 1 HETATM 5 C C5 NAG . . . I 4 15.387 -13.928 -81.813 1 76.47 ? C5 NAG 601 X 1 HETATM 6 C C6 NAG . . . I 4 16.171 -12.659 -82.061 1 66.75 ? C6 NAG 601 X 1 HETATM 7 C C7 NAG . . . I 4 11.014 -16.143 -79.717 1 82.59 ? C7 NAG 601 X 1 HETATM 8 C C8 NAG . . . I 4 10.32 -17.42 -79.347 1 89.74 ? C8 NAG 601 X 1 HETATM 9 N N2 NAG . . . I 4 12.187 -16.275 -80.346 1 84.18 ? N2 NAG 601 X 1 HETATM 10 O O3 NAG . . . I 4 12.049 -15.202 -82.99 1 88.5 ? O3 NAG 601 X 1 HETATM 11 O O4 NAG . . . I 4 14.528 -14.176 -84.049 1 94.88 ? O4 NAG 601 X 1 HETATM 12 O O5 NAG . . . I 4 15.031 -13.918 -80.421 1 68.33 ? O5 NAG 601 X 1 HETATM 13 O O6 NAG . . . I 4 15.37 -11.505 -81.841 1 53.89 ? O6 NAG 601 X 1 HETATM 14 O O7 NAG . . . I 4 10.533 -15.042 -79.459 1 70.91 ? O7 NAG 601 X 1 HETATM 15 H H2 NAG . . . I 4 12.476 -14.326 -80.595 1 97.74 ? H2 NAG 601 X 1 HETATM 16 H H3 NAG . . . I 4 13.748 -16.04 -82.462 1 110.87 ? H3 NAG 601 X 1 HETATM 17 H H4 NAG . . . I 4 13.619 -13.206 -82.584 1 110.71 ? H4 NAG 601 X 1 HETATM 18 H H5 NAG . . . I 4 15.95 -14.706 -81.984 1 91.8 ? H5 NAG 601 X 1 HETATM 19 H H61 NAG . . . I 4 16.49 -12.656 -82.984 1 80.13 ? H61 NAG 601 X 1 HETATM 20 H H62 NAG . . . I 4 16.939 -12.635 -81.459 1 80.13 ? H62 NAG 601 X 1 HETATM 21 H H81 NAG . . . I 4 9.399 -17.226 -79.089 1 107.72 ? H81 NAG 601 X 1 HETATM 22 H H82 NAG . . . I 4 10.786 -17.838 -78.599 1 107.72 ? H82 NAG 601 X 1 HETATM 23 H H83 NAG . . . I 4 10.323 -18.025 -80.112 1 107.72 ? H83 NAG 601 X 1 HETATM 24 H HN2 NAG . . . I 4 12.499 -17.115 -80.515 1 101.04 ? HN2 NAG 601 X 1 HETATM 25 H HO3 NAG . . . I 4 12.202 -15.458 -83.827 1 106.22 ? HO3 NAG 601 X 1 HETATM 26 H HO4 NAG . . . I 4 15.042 -13.493 -84.289 1 113.88 ? HO4 NAG 601 X 1 HETATM 27 H HO6 NAG . . . I 4 15.003 -11.55 -81.034 1 64.7 ? HO6 NAG 601 X 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 107 _model_server_stats.query_time_ms 752 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #