data_8TW3 # _model_server_result.job_id hWPYFDFXOYReNcEJCLm9AQ _model_server_result.datetime_utc '2024-11-17 00:51:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 8TW3 # _exptl.entry_id 8TW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TW3 _cell.length_a 80.26 _cell.length_b 115.61 _cell.length_c 158.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H 1 1 D,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 23 1_555 A SG CYS 115 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 69 A CYS 55 1_555 A SG CYS 123 A CYS 111 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 41 B CYS 23 1_555 B SG CYS 112 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 28 F CYS 28 1_555 C SG CYS 407 F CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 60 F CYS 60 1_555 C SG CYS 182 F CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 C SG CYS 283 F CYS 283 1_555 C SG CYS 311 F CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 C SG CYS 292 F CYS 292 1_555 C SG CYS 301 F CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 C SG CYS 326 F CYS 326 1_555 C SG CYS 335 F CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 C SG CYS 350 F CYS 350 1_555 C SG CYS 361 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 384 F CYS 384 1_555 C SG CYS 390 F CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 D SG CYS 28 X CYS 28 1_555 D SG CYS 407 X CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 D SG CYS 60 X CYS 60 1_555 D SG CYS 182 X CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 D SG CYS 283 X CYS 283 1_555 D SG CYS 311 X CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf14 D SG CYS 292 X CYS 292 1_555 D SG CYS 301 X CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 D SG CYS 326 X CYS 326 1_555 D SG CYS 335 X CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf16 D SG CYS 350 X CYS 350 1_555 D SG CYS 361 X CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf17 D SG CYS 384 X CYS 384 1_555 D SG CYS 390 X CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 E SG CYS 41 Y CYS 23 1_555 E SG CYS 115 Y CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 E SG CYS 69 Y CYS 55 1_555 E SG CYS 123 Y CYS 111 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf20 F SG CYS 41 Z CYS 23 1_555 F SG CYS 112 Z CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 C ND2 ASN 172 F ASN 172 1_555 H C1 NAG . F NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 D ND2 ASN 172 X ASN 172 1_555 J C1 NAG . X NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8TW3 _atom_sites.fract_transf_matrix[1][1] 0.01246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG F 1 601 429 NAG NAG . H 4 NAG F 1 602 430 NAG NAG . I 4 NAG X 1 601 429 NAG NAG . J 4 NAG X 1 602 430 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 4 7.329 37.532 -21.202 1 56.3 ? C1 NAG 602 X 1 HETATM 2 C C2 NAG . . . J 4 6.32 36.629 -20.482 1 54.98 ? C2 NAG 602 X 1 HETATM 3 C C3 NAG . . . J 4 4.918 36.801 -21.067 1 58.19 ? C3 NAG 602 X 1 HETATM 4 C C4 NAG . . . J 4 4.526 38.27 -21.119 1 63.44 ? C4 NAG 602 X 1 HETATM 5 C C5 NAG . . . J 4 5.594 39.059 -21.865 1 60.3 ? C5 NAG 602 X 1 HETATM 6 C C6 NAG . . . J 4 5.318 40.543 -21.898 1 64.58 ? C6 NAG 602 X 1 HETATM 7 C C7 NAG . . . J 4 7.558 34.656 -19.69 1 62.56 ? C7 NAG 602 X 1 HETATM 8 C C8 NAG . . . J 4 7.871 33.211 -19.94 1 58.56 ? C8 NAG 602 X 1 HETATM 9 N N2 NAG . . . J 4 6.731 35.235 -20.566 1 60.46 ? N2 NAG 602 X 1 HETATM 10 O O3 NAG . . . J 4 3.994 36.084 -20.255 1 57.64 ? O3 NAG 602 X 1 HETATM 11 O O4 NAG . . . J 4 3.281 38.431 -21.789 1 60.16 ? O4 NAG 602 X 1 HETATM 12 O O5 NAG . . . J 4 6.855 38.884 -21.206 1 56.15 ? O5 NAG 602 X 1 HETATM 13 O O6 NAG . . . J 4 6.391 41.254 -22.499 1 60.15 ? O6 NAG 602 X 1 HETATM 14 O O7 NAG . . . J 4 8.034 35.27 -18.741 1 70.53 ? O7 NAG 602 X 1 HETATM 15 H H2 NAG . . . J 4 6.284 36.902 -19.546 1 66.01 ? H2 NAG 602 X 1 HETATM 16 H H3 NAG . . . J 4 4.907 36.446 -21.977 1 69.86 ? H3 NAG 602 X 1 HETATM 17 H H4 NAG . . . J 4 4.439 38.608 -20.208 1 76.16 ? H4 NAG 602 X 1 HETATM 18 H H5 NAG . . . J 4 5.658 38.73 -22.781 1 72.39 ? H5 NAG 602 X 1 HETATM 19 H H61 NAG . . . J 4 5.193 40.865 -20.985 1 77.52 ? H61 NAG 602 X 1 HETATM 20 H H62 NAG . . . J 4 4.502 40.705 -22.408 1 77.52 ? H62 NAG 602 X 1 HETATM 21 H H81 NAG . . . J 4 8.288 32.826 -19.146 1 70.3 ? H81 NAG 602 X 1 HETATM 22 H H82 NAG . . . J 4 8.483 33.137 -20.697 1 70.3 ? H82 NAG 602 X 1 HETATM 23 H H83 NAG . . . J 4 7.046 32.729 -20.14 1 70.3 ? H83 NAG 602 X 1 HETATM 24 H HN2 NAG . . . J 4 6.407 34.731 -21.252 1 72.58 ? HN2 NAG 602 X 1 HETATM 25 H HO3 NAG . . . J 4 3.215 36.51 -20.238 1 69.2 ? HO3 NAG 602 X 1 HETATM 26 H HO4 NAG . . . J 4 2.922 39.208 -21.551 1 72.22 ? HO4 NAG 602 X 1 HETATM 27 H HO6 NAG . . . J 4 7.126 40.757 -22.47 1 72.21 ? HO6 NAG 602 X 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 93 _model_server_stats.query_time_ms 846 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 27 #