data_8TW6 # _model_server_result.job_id HU7UNS4RVT-0zUMM9YVY6A _model_server_result.datetime_utc '2024-11-22 04:12:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 8TW6 # _exptl.entry_id 8TW6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TW6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 7 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 7 n I NAG 1 C 1 NAG C 1 NAG 7 n I NAG 2 C 2 NAG C 2 NAG 7 n I BMA 3 C 3 BMA C 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 Y CYS 32 1_555 H SG CYS 32 X CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 B SG CYS 42 A CYS 42 1_555 B SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 156 A CYS 156 1_555 B SG CYS 206 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 C SG CYS 42 B CYS 42 1_555 C SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 163 B CYS 163 1_555 C SG CYS 228 B CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 49 E CYS 49 1_555 D SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 119 E CYS 119 1_555 D SG CYS 122 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 E SG CYS 49 F CYS 49 1_555 E SG CYS 98 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 E SG CYS 119 F CYS 119 1_555 E SG CYS 122 F CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 F SG CYS 37 D CYS 37 1_555 F SG CYS 73 D CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 93 D CYS 93 1_555 F SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf12 G SG CYS 46 G CYS 46 1_555 G SG CYS 87 G CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 G SG CYS 104 G CYS 104 1_555 G SG CYS 107 G CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 G ND2 ASN 52 G ASN 52 1_555 I C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 G ND2 ASN 92 G ASN 92 1_555 L C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 I O4 NAG . C NAG 1 1_555 I C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 I O4 NAG . C NAG 2 1_555 I C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 336 n n C1 O1 NAG sing 337 n n C1 O5 NAG sing 338 n n C1 H1 NAG sing 339 n n C2 C3 NAG sing 340 n n C2 N2 NAG sing 341 n n C2 H2 NAG sing 342 n n C3 C4 NAG sing 343 n n C3 O3 NAG sing 344 n n C3 H3 NAG sing 345 n n C4 C5 NAG sing 346 n n C4 O4 NAG sing 347 n n C4 H4 NAG sing 348 n n C5 C6 NAG sing 349 n n C5 O5 NAG sing 350 n n C5 H5 NAG sing 351 n n C6 O6 NAG sing 352 n n C6 H61 NAG sing 353 n n C6 H62 NAG sing 354 n n C7 C8 NAG sing 355 n n C7 N2 NAG sing 356 n n C7 O7 NAG doub 357 n n C8 H81 NAG sing 358 n n C8 H82 NAG sing 359 n n C8 H83 NAG sing 360 n n N2 HN2 NAG sing 361 n n O1 HO1 NAG sing 362 n n O3 HO3 NAG sing 363 n n O4 HO4 NAG sing 364 n n O6 HO6 NAG sing 365 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8TW6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 8 CLR Y 1 501 202 CLR CLR . K 8 CLR B 1 601 201 CLR CLR . L 9 NAG G 1 201 132 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 9 199.406 168.3 153.279 1 149.44 ? C1 NAG 201 G 1 HETATM 2 C C2 NAG . . . L 9 198.311 169.121 153.987 1 149.44 ? C2 NAG 201 G 1 HETATM 3 C C3 NAG . . . L 9 198.603 170.625 154.031 1 149.44 ? C3 NAG 201 G 1 HETATM 4 C C4 NAG . . . L 9 199.981 170.842 154.62 1 149.44 ? C4 NAG 201 G 1 HETATM 5 C C5 NAG . . . L 9 200.96 170.183 153.653 1 149.44 ? C5 NAG 201 G 1 HETATM 6 C C6 NAG . . . L 9 202.397 170.305 154.104 1 149.44 ? C6 NAG 201 G 1 HETATM 7 C C7 NAG . . . L 9 195.869 168.619 154.085 1 149.44 ? C7 NAG 201 G 1 HETATM 8 C C8 NAG . . . L 9 196.01 168.549 155.586 1 149.44 ? C8 NAG 201 G 1 HETATM 9 N N2 NAG . . . L 9 197.009 168.884 153.406 1 149.44 ? N2 NAG 201 G 1 HETATM 10 O O3 NAG . . . L 9 197.606 171.254 154.795 1 149.44 ? O3 NAG 201 G 1 HETATM 11 O O4 NAG . . . L 9 200.185 172.233 154.694 1 149.44 ? O4 NAG 201 G 1 HETATM 12 O O5 NAG . . . L 9 200.699 168.799 153.541 1 149.44 ? O5 NAG 201 G 1 HETATM 13 O O6 NAG . . . L 9 202.589 169.5 155.246 1 149.44 ? O6 NAG 201 G 1 HETATM 14 O O7 NAG . . . L 9 194.784 168.453 153.542 1 149.44 ? O7 NAG 201 G 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 14 #