data_8TWS
#
_model_server_result.job_id            0bocPX7RGPYh2gSLLb6Xrw 
_model_server_result.datetime_utc      '2025-07-19 19:33:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tws 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    8TWS 
#
_exptl.entry_id    8TWS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              550.302 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TWS 
_cell.length_a            58.622 
_cell.length_b            123.58 
_cell.length_c            45.552 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TWS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H24 N2 O16 P2' 
_chem_comp.formula_weight    550.302 
_chem_comp.id                AWU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3' C3' AWU sing 70 n n 
O4' C4' AWU sing 71 n n 
C3' C4' AWU sing 72 n n 
C3' C2' AWU sing 73 n n 
C4' C5' AWU sing 74 n n 
O3C C3C AWU sing 75 n n 
C2' O2' AWU sing 76 n n 
C2' C1' AWU sing 77 n n 
C4C C5C AWU sing 78 n n 
C4C O4C AWU sing 79 n n 
C4C C3C AWU sing 80 n n 
O1B PB AWU doub 81 n n 
C5C O5C AWU sing 82 n n 
C5' C6' AWU sing 83 n n 
C5' O5' AWU sing 84 n n 
O4C C1C AWU sing 85 n n 
C1' O5' AWU sing 86 n n 
C1' O3B AWU sing 87 n n 
O5C PA AWU sing 88 n n 
C3C C2C AWU sing 89 n n 
O3A PB AWU sing 90 n n 
O3A PA AWU sing 91 n n 
C1C C2C AWU sing 92 n n 
C1C N1 AWU sing 93 n n 
O3B PB AWU sing 94 n n 
PB O2B AWU sing 95 n n 
O2 C2 AWU doub 96 n n 
O1A PA AWU doub 97 n n 
PA O2A AWU sing 98 n n 
C2C O2C AWU sing 99 n n 
N1 C2 AWU sing 100 n n 
N1 C6 AWU sing 101 n n 
C2 N3 AWU sing 102 n n 
C6 C5 AWU doub 103 n n 
N3 C4 AWU sing 104 n n 
C5 C4 AWU sing 105 n n 
C4 O4 AWU doub 106 n n 
O2A H1 AWU sing 107 n n 
O2B H2 AWU sing 108 n n 
C5' H3 AWU sing 109 n n 
C4' H4 AWU sing 110 n n 
O4' H5 AWU sing 111 n n 
C3' H6 AWU sing 112 n n 
O3' H7 AWU sing 113 n n 
C2' H8 AWU sing 114 n n 
C1' H9 AWU sing 115 n n 
N3 H10 AWU sing 116 n n 
C5 H11 AWU sing 117 n n 
C6 H12 AWU sing 118 n n 
C1C H13 AWU sing 119 n n 
C2C H14 AWU sing 120 n n 
C3C H15 AWU sing 121 n n 
C4C H16 AWU sing 122 n n 
C5C H17 AWU sing 123 n n 
C5C H18 AWU sing 124 n n 
C6' H19 AWU sing 125 n n 
C6' H20 AWU sing 126 n n 
C6' H21 AWU sing 127 n n 
O2' H22 AWU sing 128 n n 
O2C H23 AWU sing 129 n n 
O3C H24 AWU sing 130 n n 
#
_atom_sites.entry_id                     8TWS 
_atom_sites.fract_transf_matrix[1][1]    0.017058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008092 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021953 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           AWU 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1001 
_pdbx_nonpoly_scheme.auth_seq_num     1001 
_pdbx_nonpoly_scheme.pdb_mon_id       AWU 
_pdbx_nonpoly_scheme.auth_mon_id      AWU 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA AWU . . . C 3 27.427 22.169 9.965 1 66.81 ? PA AWU 1001 A 1 
HETATM 2 O O1A AWU . . . C 3 28.273 20.99 10.387 1 57.11 -1 O1A AWU 1001 A 1 
HETATM 3 O O2A AWU . . . C 3 26.269 22.285 10.929 1 61.71 ? O2A AWU 1001 A 1 
HETATM 4 O O3A AWU . . . C 3 28.303 23.567 10.018 1 68.32 ? O3A AWU 1001 A 1 
HETATM 5 P PB AWU . . . C 3 27.899 24.88 10.934 1 64.62 ? PB AWU 1001 A 1 
HETATM 6 O O1B AWU . . . C 3 28.46 24.72 12.327 1 59.59 -1 O1B AWU 1001 A 1 
HETATM 7 O O2B AWU . . . C 3 28.46 26.14 10.32 1 63.46 ? O2B AWU 1001 A 1 
HETATM 8 O O3B AWU . . . C 3 26.268 25.048 11.033 1 75.31 ? O3B AWU 1001 A 1 
HETATM 9 C C5' AWU . . . C 3 24.045 26.983 10.084 1 63.41 ? C5' AWU 1001 A 1 
HETATM 10 O O5' AWU . . . C 3 25.4 27.138 10.606 1 65.21 ? O5' AWU 1001 A 1 
HETATM 11 C C4' AWU . . . C 3 23.041 27.11 11.234 1 61.52 ? C4' AWU 1001 A 1 
HETATM 12 O O4' AWU . . . C 3 23.144 28.417 11.842 1 58.91 ? O4' AWU 1001 A 1 
HETATM 13 C C3' AWU . . . C 3 23.249 26.119 12.302 1 64.24 ? C3' AWU 1001 A 1 
HETATM 14 O O3' AWU . . . C 3 22.481 24.897 11.948 1 60.75 ? O3' AWU 1001 A 1 
HETATM 15 C C2' AWU . . . C 3 24.633 25.716 12.588 1 61.17 ? C2' AWU 1001 A 1 
HETATM 16 C C1' AWU . . . C 3 25.749 26.17 11.646 1 67.71 ? C1' AWU 1001 A 1 
HETATM 17 N N1 AWU . . . C 3 27.548 19.147 5.545 1 57.55 ? N1 AWU 1001 A 1 
HETATM 18 C C2 AWU . . . C 3 27.824 18.21 4.413 1 55.9 ? C2 AWU 1001 A 1 
HETATM 19 O O2 AWU . . . C 3 26.955 17.537 3.97 1 56.56 ? O2 AWU 1001 A 1 
HETATM 20 N N3 AWU . . . C 3 29.204 18.112 3.837 1 57.19 ? N3 AWU 1001 A 1 
HETATM 21 C C4 AWU . . . C 3 30.273 18.936 4.377 1 56.6 ? C4 AWU 1001 A 1 
HETATM 22 O O4 AWU . . . C 3 31.363 18.86 3.923 1 57.83 ? O4 AWU 1001 A 1 
HETATM 23 C C5 AWU . . . C 3 29.993 19.869 5.496 1 56.99 ? C5 AWU 1001 A 1 
HETATM 24 C C6 AWU . . . C 3 28.628 19.97 6.061 1 56.2 ? C6 AWU 1001 A 1 
HETATM 25 C C1C AWU . . . C 3 26.214 19.228 6.09 1 56.58 ? C1C AWU 1001 A 1 
HETATM 26 C C2C AWU . . . C 3 26.168 18.868 7.36 1 55.32 ? C2C AWU 1001 A 1 
HETATM 27 C C3C AWU . . . C 3 25.133 19.868 8.125 1 56.43 ? C3C AWU 1001 A 1 
HETATM 28 C C4C AWU . . . C 3 24.977 20.98 7.358 1 58.11 ? C4C AWU 1001 A 1 
HETATM 29 C C5C AWU . . . C 3 25.568 22.192 8.072 1 60.18 ? C5C AWU 1001 A 1 
HETATM 30 C C6' AWU . . . C 3 23.854 25.667 9.409 1 63.36 ? C6' AWU 1001 A 1 
HETATM 31 O O2' AWU . . . C 3 24.645 24.257 12.637 1 61.29 ? O2' AWU 1001 A 1 
HETATM 32 O O2C AWU . . . C 3 25.668 17.506 7.474 1 55.81 ? O2C AWU 1001 A 1 
HETATM 33 O O3C AWU . . . C 3 23.878 19.208 8.292 1 54.68 ? O3C AWU 1001 A 1 
HETATM 34 O O4C AWU . . . C 3 25.75 20.757 6.053 1 59.28 ? O4C AWU 1001 A 1 
HETATM 35 O O5C AWU . . . C 3 26.901 21.925 8.418 1 64.85 ? O5C AWU 1001 A 1 
HETATM 36 H H3 AWU . . . C 3 23.875 27.734 9.322 1 78.85 ? H3 AWU 1001 A 1 
HETATM 37 H H4 AWU . . . C 3 22.057 26.978 10.802 1 76.58 ? H4 AWU 1001 A 1 
HETATM 38 H H5 AWU . . . C 3 24.055 28.651 11.941 1 73.45 ? H5 AWU 1001 A 1 
HETATM 39 H H6 AWU . . . C 3 22.889 26.59 13.209 1 79.85 ? H6 AWU 1001 A 1 
HETATM 40 H H7 AWU . . . C 3 21.864 24.691 12.627 1 75.65 ? H7 AWU 1001 A 1 
HETATM 41 H H8 AWU . . . C 3 24.879 26.19 13.53 1 76.16 ? H8 AWU 1001 A 1 
HETATM 42 H H9 AWU . . . C 3 26.474 26.673 12.273 1 84.01 ? H9 AWU 1001 A 1 
HETATM 43 H H10 AWU . . . C 3 29.389 17.481 3.082 1 71.38 ? H10 AWU 1001 A 1 
HETATM 44 H H11 AWU . . . C 3 30.79 20.48 5.901 1 71.14 ? H11 AWU 1001 A 1 
HETATM 45 H H12 AWU . . . C 3 28.433 20.664 6.869 1 70.19 ? H12 AWU 1001 A 1 
HETATM 46 H H13 AWU . . . C 3 25.536 18.586 5.537 1 70.65 ? H13 AWU 1001 A 1 
HETATM 47 H H14 AWU . . . C 3 27.162 18.975 7.781 1 69.14 ? H14 AWU 1001 A 1 
HETATM 48 H H15 AWU . . . C 3 25.561 20.165 9.075 1 70.48 ? H15 AWU 1001 A 1 
HETATM 49 H H16 AWU . . . C 3 23.923 21.103 7.142 1 72.48 ? H16 AWU 1001 A 1 
HETATM 50 H H17 AWU . . . C 3 25.53 23.054 7.414 1 74.97 ? H17 AWU 1001 A 1 
HETATM 51 H H18 AWU . . . C 3 24.995 22.397 8.97 1 74.97 ? H18 AWU 1001 A 1 
HETATM 52 H H19 AWU . . . C 3 24.49 25.616 8.53 1 78.79 ? H19 AWU 1001 A 1 
HETATM 53 H H20 AWU . . . C 3 22.816 25.56 9.111 1 78.79 ? H20 AWU 1001 A 1 
HETATM 54 H H21 AWU . . . C 3 24.119 24.867 10.094 1 78.79 ? H21 AWU 1001 A 1 
HETATM 55 H H22 AWU . . . C 3 25.461 23.934 12.977 1 76.3 ? H22 AWU 1001 A 1 
HETATM 56 H H23 AWU . . . C 3 24.72 17.505 7.465 1 69.73 ? H23 AWU 1001 A 1 
HETATM 57 H H24 AWU . . . C 3 23.278 19.766 8.762 1 68.37 ? H24 AWU 1001 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           57 
#