data_8TWY # _model_server_result.job_id kokOScv0tLo7Rxn5kqhWBA _model_server_result.datetime_utc '2025-08-31 00:01:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8twy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8TWY # _exptl.entry_id 8TWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.663 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-{[2-(4-{(4P)-4-[2-amino-4-(difluoromethyl)pyrimidin-5-yl]-6-[(3S)-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl}piperazin-1-yl)-2-oxoethoxy]methyl}piperidin-1-yl)prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TWY _cell.length_a 59.13 _cell.length_b 135.41 _cell.length_c 143.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 759 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 862 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C28 _struct_conn.ptnr2_label_comp_id RNX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RNX _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H38 F2 N10 O4' _chem_comp.formula_weight 616.663 _chem_comp.id RNX _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-{[2-(4-{(4P)-4-[2-amino-4-(difluoromethyl)pyrimidin-5-yl]-6-[(3S)-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl}piperazin-1-yl)-2-oxoethoxy]methyl}piperidin-1-yl)prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 RNX sing 275 n n N08 C02 RNX doub 276 n y N08 C09 RNX sing 277 n y C02 N03 RNX sing 278 n y C09 C10 RNX doub 279 n y N03 C04 RNX doub 280 n y C10 C04 RNX sing 281 n y C10 C11 RNX sing 282 n n C04 C05 RNX sing 283 n n F07 C05 RNX sing 284 n n C11 N12 RNX doub 285 n y C11 N44 RNX sing 286 n y C19 O20 RNX sing 287 n n C19 C18 RNX sing 288 n n N12 C13 RNX sing 289 n y C15 C16 RNX sing 290 n n C15 N14 RNX sing 291 n n C05 F06 RNX sing 292 n n O20 C21 RNX sing 293 n n N44 C36 RNX doub 294 n y O29 C26 RNX doub 295 n n C31 C30 RNX sing 296 n n C31 C22 RNX sing 297 n n C38 C39 RNX sing 298 n n C38 N37 RNX sing 299 n n C13 N14 RNX sing 300 n n C13 N35 RNX doub 301 n y C16 N17 RNX sing 302 n n C36 N35 RNX sing 303 n y C36 N37 RNX sing 304 n n N14 C34 RNX sing 305 n n C18 N17 RNX sing 306 n n C18 O32 RNX doub 307 n n C30 N25 RNX sing 308 n n C28 C27 RNX doub 309 n n C26 N25 RNX sing 310 n n C26 C27 RNX sing 311 n n C39 O40 RNX sing 312 n n N17 C33 RNX sing 313 n n N37 C42 RNX sing 314 n n C21 C22 RNX sing 315 n n C22 C23 RNX sing 316 n n C34 C33 RNX sing 317 n n N25 C24 RNX sing 318 n n O40 C41 RNX sing 319 n n C42 C41 RNX sing 320 n n C42 C43 RNX sing 321 n n C24 C23 RNX sing 322 n n C15 H151 RNX sing 323 n n C15 H152 RNX sing 324 n n C21 H212 RNX sing 325 n n C21 H211 RNX sing 326 n n C22 H221 RNX sing 327 n n C24 H242 RNX sing 328 n n C24 H241 RNX sing 329 n n C28 H282 RNX sing 330 n n C28 H281 RNX sing 331 n n C05 H051 RNX sing 332 n n C09 H091 RNX sing 333 n n C16 H162 RNX sing 334 n n C16 H161 RNX sing 335 n n C19 H191 RNX sing 336 n n C19 H192 RNX sing 337 n n C23 H231 RNX sing 338 n n C23 H232 RNX sing 339 n n C27 H272 RNX sing 340 n n C30 H302 RNX sing 341 n n C30 H301 RNX sing 342 n n C31 H311 RNX sing 343 n n C31 H312 RNX sing 344 n n C33 H331 RNX sing 345 n n C33 H332 RNX sing 346 n n C34 H342 RNX sing 347 n n C34 H341 RNX sing 348 n n C38 H382 RNX sing 349 n n C38 H381 RNX sing 350 n n C39 H391 RNX sing 351 n n C39 H392 RNX sing 352 n n C41 H411 RNX sing 353 n n C41 H412 RNX sing 354 n n C42 H421 RNX sing 355 n n C43 H431 RNX sing 356 n n C43 H432 RNX sing 357 n n C43 H433 RNX sing 358 n n N01 H012 RNX sing 359 n n N01 H011 RNX sing 360 n n # _atom_sites.entry_id 8TWY _atom_sites.fract_transf_matrix[1][1] 0.016912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RNX _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1101 _pdbx_nonpoly_scheme.pdb_mon_id RNX _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RNX . . . B 2 -16.36 7.663 26.539 1 90.58 ? C10 RNX 1101 A 1 HETATM 2 N N12 RNX . . . B 2 -18.246 8.841 27.592 1 88.2 ? N12 RNX 1101 A 1 HETATM 3 C C13 RNX . . . B 2 -18.792 9.802 28.301 1 95.59 ? C13 RNX 1101 A 1 HETATM 4 C C15 RNX . . . B 2 -21.247 9.26 27.617 1 102.07 ? C15 RNX 1101 A 1 HETATM 5 C C21 RNX . . . B 2 -26.857 10.913 29.097 1 128.14 ? C21 RNX 1101 A 1 HETATM 6 C C22 RNX . . . B 2 -28.16 11.704 29.128 1 131.69 ? C22 RNX 1101 A 1 HETATM 7 C C24 RNX . . . B 2 -30.303 12.072 30.371 1 131.52 ? C24 RNX 1101 A 1 HETATM 8 C C26 RNX . . . B 2 -32.398 11.544 28.902 1 123.71 ? C26 RNX 1101 A 1 HETATM 9 C C28 RNX . . . B 2 -33.26 13.99 28.798 1 124.37 ? C28 RNX 1101 A 1 HETATM 10 C C02 RNX . . . B 2 -15.356 5.626 25.124 1 92.33 ? C02 RNX 1101 A 1 HETATM 11 C C04 RNX . . . B 2 -16.816 6.347 26.714 1 92.44 ? C04 RNX 1101 A 1 HETATM 12 C C05 RNX . . . B 2 -17.908 6.129 27.74 1 99.66 ? C05 RNX 1101 A 1 HETATM 13 C C09 RNX . . . B 2 -15.337 7.892 25.611 1 96.99 ? C09 RNX 1101 A 1 HETATM 14 C C11 RNX . . . B 2 -16.937 8.827 27.358 1 94.31 ? C11 RNX 1101 A 1 HETATM 15 C C16 RNX . . . B 2 -22.553 8.944 28.345 1 116.35 ? C16 RNX 1101 A 1 HETATM 16 C C18 RNX . . . B 2 -24.183 10.839 28.608 1 118.47 ? C18 RNX 1101 A 1 HETATM 17 C C19 RNX . . . B 2 -25.131 10.283 27.535 1 118.09 ? C19 RNX 1101 A 1 HETATM 18 C C23 RNX . . . B 2 -28.823 11.7 30.465 1 132.72 ? C23 RNX 1101 A 1 HETATM 19 C C27 RNX . . . B 2 -33.19 12.67 29.572 1 120.9 ? C27 RNX 1101 A 1 HETATM 20 C C30 RNX . . . B 2 -30.132 10.241 28.75 1 136.97 ? C30 RNX 1101 A 1 HETATM 21 C C31 RNX . . . B 2 -29.002 11.046 28.104 1 127.02 ? C31 RNX 1101 A 1 HETATM 22 C C33 RNX . . . B 2 -22.113 10.622 29.946 1 114.73 ? C33 RNX 1101 A 1 HETATM 23 C C34 RNX . . . B 2 -20.793 10.976 29.301 1 106.41 ? C34 RNX 1101 A 1 HETATM 24 C C36 RNX . . . B 2 -16.721 10.758 28.535 1 85.84 ? C36 RNX 1101 A 1 HETATM 25 C C38 RNX . . . B 2 -14.902 12.46 28.149 1 84.47 ? C38 RNX 1101 A 1 HETATM 26 C C39 RNX . . . B 2 -13.947 13.368 28.93 1 85.95 ? C39 RNX 1101 A 1 HETATM 27 C C41 RNX . . . B 2 -15.672 14.002 30.338 1 83.66 ? C41 RNX 1101 A 1 HETATM 28 C C42 RNX . . . B 2 -16.554 12.938 29.694 1 77.45 ? C42 RNX 1101 A 1 HETATM 29 C C43 RNX . . . B 2 -17.371 12.393 30.873 1 82.89 ? C43 RNX 1101 A 1 HETATM 30 F F06 RNX . . . B 2 -17.972 4.925 28.439 1 102.27 ? F06 RNX 1101 A 1 HETATM 31 F F07 RNX . . . B 2 -19.13 6.386 27.199 1 116.68 ? F07 RNX 1101 A 1 HETATM 32 N N01 RNX . . . B 2 -14.824 4.511 24.353 1 91.14 ? N01 RNX 1101 A 1 HETATM 33 N N03 RNX . . . B 2 -16.317 5.35 25.992 1 93.91 ? N03 RNX 1101 A 1 HETATM 34 N N08 RNX . . . B 2 -14.888 6.845 24.944 1 94.02 ? N08 RNX 1101 A 1 HETATM 35 N N14 RNX . . . B 2 -20.222 9.793 28.582 1 106.8 ? N14 RNX 1101 A 1 HETATM 36 N N17 RNX . . . B 2 -22.985 10.127 28.966 1 124.41 ? N17 RNX 1101 A 1 HETATM 37 N N25 RNX . . . B 2 -31.033 11.282 29.33 1 132.37 ? N25 RNX 1101 A 1 HETATM 38 N N35 RNX . . . B 2 -18.024 10.764 28.769 1 84.5 ? N35 RNX 1101 A 1 HETATM 39 N N37 RNX . . . B 2 -15.872 11.825 29.046 1 86.29 ? N37 RNX 1101 A 1 HETATM 40 N N44 RNX . . . B 2 -16.176 9.79 27.821 1 93.61 ? N44 RNX 1101 A 1 HETATM 41 O O20 RNX . . . B 2 -26.45 10.709 27.751 1 130.08 ? O20 RNX 1101 A 1 HETATM 42 O O29 RNX . . . B 2 -32.895 10.865 28.065 1 119.49 ? O29 RNX 1101 A 1 HETATM 43 O O32 RNX . . . B 2 -24.371 11.846 29.2 1 115.06 ? O32 RNX 1101 A 1 HETATM 44 O O40 RNX . . . B 2 -14.592 14.414 29.578 1 90.55 ? O40 RNX 1101 A 1 HETATM 45 H H151 RNX . . . B 2 -21.416 9.923 26.929 1 122.53 ? H151 RNX 1101 A 1 HETATM 46 H H152 RNX . . . B 2 -20.907 8.451 27.202 1 122.53 ? H152 RNX 1101 A 1 HETATM 47 H H212 RNX . . . B 2 -26.169 11.408 29.57 1 153.81 ? H212 RNX 1101 A 1 HETATM 48 H H211 RNX . . . B 2 -26.994 10.053 29.526 1 153.81 ? H211 RNX 1101 A 1 HETATM 49 H H221 RNX . . . B 2 -27.972 12.638 28.946 1 158.07 ? H221 RNX 1101 A 1 HETATM 50 H H242 RNX . . . B 2 -30.72 11.911 31.233 1 157.87 ? H242 RNX 1101 A 1 HETATM 51 H H241 RNX . . . B 2 -30.374 13.015 30.154 1 157.87 ? H241 RNX 1101 A 1 HETATM 52 H H282 RNX . . . B 2 -33.597 14.688 29.38 1 149.29 ? H282 RNX 1101 A 1 HETATM 53 H H281 RNX . . . B 2 -33.854 13.887 28.038 1 149.29 ? H281 RNX 1101 A 1 HETATM 54 H H051 RNX . . . B 2 -17.655 6.758 28.433 1 119.64 ? H051 RNX 1101 A 1 HETATM 55 H H091 RNX . . . B 2 -14.99 8.743 25.472 1 116.43 ? H091 RNX 1101 A 1 HETATM 56 H H162 RNX . . . B 2 -22.404 8.254 29.01 1 139.66 ? H162 RNX 1101 A 1 HETATM 57 H H161 RNX . . . B 2 -23.221 8.637 27.712 1 139.66 ? H161 RNX 1101 A 1 HETATM 58 H H191 RNX . . . B 2 -24.838 10.594 26.664 1 141.75 ? H191 RNX 1101 A 1 HETATM 59 H H192 RNX . . . B 2 -25.104 9.314 27.562 1 141.75 ? H192 RNX 1101 A 1 HETATM 60 H H231 RNX . . . B 2 -28.374 12.339 31.04 1 159.31 ? H231 RNX 1101 A 1 HETATM 61 H H232 RNX . . . B 2 -28.746 10.813 30.85 1 159.31 ? H232 RNX 1101 A 1 HETATM 62 H H272 RNX . . . B 2 -34.097 12.357 29.711 1 145.13 ? H272 RNX 1101 A 1 HETATM 63 H H302 RNX . . . B 2 -29.788 9.657 29.443 1 164.41 ? H302 RNX 1101 A 1 HETATM 64 H H301 RNX . . . B 2 -30.6 9.71 28.087 1 164.41 ? H301 RNX 1101 A 1 HETATM 65 H H311 RNX . . . B 2 -29.386 11.723 27.525 1 152.47 ? H311 RNX 1101 A 1 HETATM 66 H H312 RNX . . . B 2 -28.45 10.449 27.575 1 152.47 ? H312 RNX 1101 A 1 HETATM 67 H H331 RNX . . . B 2 -21.972 9.946 30.627 1 137.72 ? H331 RNX 1101 A 1 HETATM 68 H H332 RNX . . . B 2 -22.499 11.412 30.355 1 137.72 ? H332 RNX 1101 A 1 HETATM 69 H H342 RNX . . . B 2 -20.93 11.699 28.668 1 127.74 ? H342 RNX 1101 A 1 HETATM 70 H H341 RNX . . . B 2 -20.17 11.265 29.985 1 127.74 ? H341 RNX 1101 A 1 HETATM 71 H H382 RNX . . . B 2 -14.389 11.773 27.696 1 101.41 ? H382 RNX 1101 A 1 HETATM 72 H H381 RNX . . . B 2 -15.377 12.99 27.49 1 101.41 ? H381 RNX 1101 A 1 HETATM 73 H H391 RNX . . . B 2 -13.299 13.739 28.311 1 103.19 ? H391 RNX 1101 A 1 HETATM 74 H H392 RNX . . . B 2 -13.484 12.832 29.592 1 103.19 ? H392 RNX 1101 A 1 HETATM 75 H H411 RNX . . . B 2 -16.223 14.778 30.522 1 100.44 ? H411 RNX 1101 A 1 HETATM 76 H H412 RNX . . . B 2 -15.332 13.646 31.174 1 100.44 ? H412 RNX 1101 A 1 HETATM 77 H H421 RNX . . . B 2 -17.085 13.339 28.989 1 92.99 ? H421 RNX 1101 A 1 HETATM 78 H H431 RNX . . . B 2 -17.002 11.542 31.156 1 99.51 ? H431 RNX 1101 A 1 HETATM 79 H H432 RNX . . . B 2 -18.293 12.27 30.597 1 99.51 ? H432 RNX 1101 A 1 HETATM 80 H H433 RNX . . . B 2 -17.335 13.023 31.61 1 99.51 ? H433 RNX 1101 A 1 HETATM 81 H H012 RNX . . . B 2 -14.301 4.649 23.683 1 109.42 ? H012 RNX 1101 A 1 HETATM 82 H H011 RNX . . . B 2 -15.043 3.71 24.569 1 109.42 ? H011 RNX 1101 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 82 #