data_8TX0 # _model_server_result.job_id cLDBKuaAoNONtrlpmPuDCA _model_server_result.datetime_utc '2025-01-14 23:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8TX0 # _exptl.entry_id 8TX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TX0 _cell.length_a 89.51 _cell.length_b 118.91 _cell.length_c 139.3 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TPO 189 A TPO 342 1_555 A N VAL 190 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MET 191 A MET 344 1_555 A N TPO 192 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C TPO 192 A TPO 345 1_555 A N SEP 193 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C SEP 193 A SEP 346 1_555 A N ARG 194 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 B C TPO 189 B TPO 342 1_555 B N VAL 190 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 B C MET 191 B MET 344 1_555 B N TPO 192 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C TPO 192 B TPO 345 1_555 B N SEP 193 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C SEP 193 B SEP 346 1_555 B N ARG 194 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 B O GLY 230 B GLY 383 1_555 I NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc2 I NA NA . B NA 504 1_555 K O HOH . B HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 I NA NA . B NA 504 1_555 K O HOH . B HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8TX0 _atom_sites.fract_transf_matrix[1][1] 0.011172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VEU A 1 501 501 VEU LIG . D 3 EDO A 1 502 502 EDO EDO . E 3 EDO A 1 503 503 EDO EDO . F 2 VEU B 1 501 501 VEU LIG . G 3 EDO B 1 502 502 EDO EDO . H 3 EDO B 1 503 503 EDO EDO . I 4 NA B 1 504 1 NA NA . J 5 HOH A 1 601 25 HOH HOH . J 5 HOH A 2 602 93 HOH HOH . J 5 HOH A 3 603 95 HOH HOH . J 5 HOH A 4 604 150 HOH HOH . J 5 HOH A 5 605 18 HOH HOH . J 5 HOH A 6 606 164 HOH HOH . J 5 HOH A 7 607 51 HOH HOH . J 5 HOH A 8 608 122 HOH HOH . J 5 HOH A 9 609 32 HOH HOH . J 5 HOH A 10 610 13 HOH HOH . J 5 HOH A 11 611 38 HOH HOH . J 5 HOH A 12 612 89 HOH HOH . J 5 HOH A 13 613 183 HOH HOH . J 5 HOH A 14 614 44 HOH HOH . J 5 HOH A 15 615 46 HOH HOH . J 5 HOH A 16 616 11 HOH HOH . J 5 HOH A 17 617 68 HOH HOH . J 5 HOH A 18 618 60 HOH HOH . J 5 HOH A 19 619 6 HOH HOH . J 5 HOH A 20 620 43 HOH HOH . J 5 HOH A 21 621 148 HOH HOH . J 5 HOH A 22 622 77 HOH HOH . J 5 HOH A 23 623 250 HOH HOH . J 5 HOH A 24 624 9 HOH HOH . J 5 HOH A 25 625 62 HOH HOH . J 5 HOH A 26 626 24 HOH HOH . J 5 HOH A 27 627 3 HOH HOH . J 5 HOH A 28 628 141 HOH HOH . J 5 HOH A 29 629 50 HOH HOH . J 5 HOH A 30 630 130 HOH HOH . J 5 HOH A 31 631 146 HOH HOH . J 5 HOH A 32 632 187 HOH HOH . J 5 HOH A 33 633 174 HOH HOH . J 5 HOH A 34 634 94 HOH HOH . J 5 HOH A 35 635 87 HOH HOH . J 5 HOH A 36 636 66 HOH HOH . J 5 HOH A 37 637 37 HOH HOH . J 5 HOH A 38 638 83 HOH HOH . J 5 HOH A 39 639 85 HOH HOH . J 5 HOH A 40 640 33 HOH HOH . J 5 HOH A 41 641 84 HOH HOH . J 5 HOH A 42 642 14 HOH HOH . J 5 HOH A 43 643 147 HOH HOH . J 5 HOH A 44 644 114 HOH HOH . J 5 HOH A 45 645 69 HOH HOH . J 5 HOH A 46 646 107 HOH HOH . J 5 HOH A 47 647 155 HOH HOH . J 5 HOH A 48 648 34 HOH HOH . J 5 HOH A 49 649 56 HOH HOH . J 5 HOH A 50 650 59 HOH HOH . J 5 HOH A 51 651 16 HOH HOH . J 5 HOH A 52 652 12 HOH HOH . J 5 HOH A 53 653 88 HOH HOH . J 5 HOH A 54 654 125 HOH HOH . J 5 HOH A 55 655 110 HOH HOH . J 5 HOH A 56 656 35 HOH HOH . J 5 HOH A 57 657 17 HOH HOH . J 5 HOH A 58 658 23 HOH HOH . J 5 HOH A 59 659 70 HOH HOH . J 5 HOH A 60 660 81 HOH HOH . J 5 HOH A 61 661 53 HOH HOH . J 5 HOH A 62 662 31 HOH HOH . J 5 HOH A 63 663 55 HOH HOH . J 5 HOH A 64 664 207 HOH HOH . J 5 HOH A 65 665 120 HOH HOH . J 5 HOH A 66 666 217 HOH HOH . J 5 HOH A 67 667 243 HOH HOH . J 5 HOH A 68 668 226 HOH HOH . J 5 HOH A 69 669 185 HOH HOH . J 5 HOH A 70 670 254 HOH HOH . J 5 HOH A 71 671 140 HOH HOH . J 5 HOH A 72 672 112 HOH HOH . J 5 HOH A 73 673 136 HOH HOH . J 5 HOH A 74 674 189 HOH HOH . J 5 HOH A 75 675 63 HOH HOH . J 5 HOH A 76 676 194 HOH HOH . J 5 HOH A 77 677 103 HOH HOH . J 5 HOH A 78 678 121 HOH HOH . J 5 HOH A 79 679 219 HOH HOH . J 5 HOH A 80 680 233 HOH HOH . J 5 HOH A 81 681 30 HOH HOH . J 5 HOH A 82 682 156 HOH HOH . J 5 HOH A 83 683 160 HOH HOH . J 5 HOH A 84 684 98 HOH HOH . J 5 HOH A 85 685 40 HOH HOH . J 5 HOH A 86 686 198 HOH HOH . J 5 HOH A 87 687 252 HOH HOH . J 5 HOH A 88 688 239 HOH HOH . J 5 HOH A 89 689 166 HOH HOH . J 5 HOH A 90 690 215 HOH HOH . J 5 HOH A 91 691 111 HOH HOH . J 5 HOH A 92 692 90 HOH HOH . J 5 HOH A 93 693 73 HOH HOH . J 5 HOH A 94 694 105 HOH HOH . J 5 HOH A 95 695 167 HOH HOH . J 5 HOH A 96 696 158 HOH HOH . J 5 HOH A 97 697 67 HOH HOH . J 5 HOH A 98 698 232 HOH HOH . K 5 HOH B 1 601 57 HOH HOH . K 5 HOH B 2 602 97 HOH HOH . K 5 HOH B 3 603 180 HOH HOH . K 5 HOH B 4 604 163 HOH HOH . K 5 HOH B 5 605 101 HOH HOH . K 5 HOH B 6 606 19 HOH HOH . K 5 HOH B 7 607 129 HOH HOH . K 5 HOH B 8 608 116 HOH HOH . K 5 HOH B 9 609 201 HOH HOH . K 5 HOH B 10 610 20 HOH HOH . K 5 HOH B 11 611 39 HOH HOH . K 5 HOH B 12 612 22 HOH HOH . K 5 HOH B 13 613 261 HOH HOH . K 5 HOH B 14 614 213 HOH HOH . K 5 HOH B 15 615 65 HOH HOH . K 5 HOH B 16 616 80 HOH HOH . K 5 HOH B 17 617 86 HOH HOH . K 5 HOH B 18 618 151 HOH HOH . K 5 HOH B 19 619 192 HOH HOH . K 5 HOH B 20 620 28 HOH HOH . K 5 HOH B 21 621 64 HOH HOH . K 5 HOH B 22 622 29 HOH HOH . K 5 HOH B 23 623 7 HOH HOH . K 5 HOH B 24 624 45 HOH HOH . K 5 HOH B 25 625 1 HOH HOH . K 5 HOH B 26 626 15 HOH HOH . K 5 HOH B 27 627 128 HOH HOH . K 5 HOH B 28 628 48 HOH HOH . K 5 HOH B 29 629 134 HOH HOH . K 5 HOH B 30 630 2 HOH HOH . K 5 HOH B 31 631 4 HOH HOH . K 5 HOH B 32 632 10 HOH HOH . K 5 HOH B 33 633 8 HOH HOH . K 5 HOH B 34 634 61 HOH HOH . K 5 HOH B 35 635 256 HOH HOH . K 5 HOH B 36 636 75 HOH HOH . K 5 HOH B 37 637 54 HOH HOH . K 5 HOH B 38 638 184 HOH HOH . K 5 HOH B 39 639 165 HOH HOH . K 5 HOH B 40 640 91 HOH HOH . K 5 HOH B 41 641 238 HOH HOH . K 5 HOH B 42 642 216 HOH HOH . K 5 HOH B 43 643 36 HOH HOH . K 5 HOH B 44 644 228 HOH HOH . K 5 HOH B 45 645 79 HOH HOH . K 5 HOH B 46 646 49 HOH HOH . K 5 HOH B 47 647 47 HOH HOH . K 5 HOH B 48 648 236 HOH HOH . K 5 HOH B 49 649 115 HOH HOH . K 5 HOH B 50 650 58 HOH HOH . K 5 HOH B 51 651 133 HOH HOH . K 5 HOH B 52 652 132 HOH HOH . K 5 HOH B 53 653 171 HOH HOH . K 5 HOH B 54 654 71 HOH HOH . K 5 HOH B 55 655 172 HOH HOH . K 5 HOH B 56 656 21 HOH HOH . K 5 HOH B 57 657 82 HOH HOH . K 5 HOH B 58 658 153 HOH HOH . K 5 HOH B 59 659 248 HOH HOH . K 5 HOH B 60 660 5 HOH HOH . K 5 HOH B 61 661 142 HOH HOH . K 5 HOH B 62 662 169 HOH HOH . K 5 HOH B 63 663 102 HOH HOH . K 5 HOH B 64 664 72 HOH HOH . K 5 HOH B 65 665 247 HOH HOH . K 5 HOH B 66 666 96 HOH HOH . K 5 HOH B 67 667 222 HOH HOH . K 5 HOH B 68 668 168 HOH HOH . K 5 HOH B 69 669 41 HOH HOH . K 5 HOH B 70 670 74 HOH HOH . K 5 HOH B 71 671 117 HOH HOH . K 5 HOH B 72 672 78 HOH HOH . K 5 HOH B 73 673 149 HOH HOH . K 5 HOH B 74 674 127 HOH HOH . K 5 HOH B 75 675 188 HOH HOH . K 5 HOH B 76 676 202 HOH HOH . K 5 HOH B 77 677 26 HOH HOH . K 5 HOH B 78 678 137 HOH HOH . K 5 HOH B 79 679 206 HOH HOH . K 5 HOH B 80 680 249 HOH HOH . K 5 HOH B 81 681 99 HOH HOH . K 5 HOH B 82 682 145 HOH HOH . K 5 HOH B 83 683 170 HOH HOH . K 5 HOH B 84 684 76 HOH HOH . K 5 HOH B 85 685 193 HOH HOH . K 5 HOH B 86 686 138 HOH HOH . K 5 HOH B 87 687 178 HOH HOH . K 5 HOH B 88 688 52 HOH HOH . K 5 HOH B 89 689 124 HOH HOH . K 5 HOH B 90 690 210 HOH HOH . K 5 HOH B 91 691 131 HOH HOH . K 5 HOH B 92 692 135 HOH HOH . K 5 HOH B 93 693 154 HOH HOH . K 5 HOH B 94 694 104 HOH HOH . K 5 HOH B 95 695 229 HOH HOH . K 5 HOH B 96 696 113 HOH HOH . K 5 HOH B 97 697 230 HOH HOH . K 5 HOH B 98 698 234 HOH HOH . K 5 HOH B 99 699 200 HOH HOH . K 5 HOH B 100 700 42 HOH HOH . K 5 HOH B 101 701 157 HOH HOH . K 5 HOH B 102 702 27 HOH HOH . K 5 HOH B 103 703 100 HOH HOH . K 5 HOH B 104 704 182 HOH HOH . K 5 HOH B 105 705 221 HOH HOH . K 5 HOH B 106 706 212 HOH HOH . K 5 HOH B 107 707 262 HOH HOH . K 5 HOH B 108 708 225 HOH HOH . K 5 HOH B 109 709 223 HOH HOH . K 5 HOH B 110 710 237 HOH HOH . K 5 HOH B 111 711 118 HOH HOH . K 5 HOH B 112 712 231 HOH HOH . K 5 HOH B 113 713 159 HOH HOH . K 5 HOH B 114 714 92 HOH HOH . K 5 HOH B 115 715 175 HOH HOH . K 5 HOH B 116 716 143 HOH HOH . K 5 HOH B 117 717 190 HOH HOH . K 5 HOH B 118 718 177 HOH HOH . K 5 HOH B 119 719 255 HOH HOH . K 5 HOH B 120 720 162 HOH HOH . K 5 HOH B 121 721 246 HOH HOH . K 5 HOH B 122 722 245 HOH HOH . K 5 HOH B 123 723 108 HOH HOH . K 5 HOH B 124 724 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -35.739 -45.554 6.203 1 67.3 ? C1 EDO 502 A 1 HETATM 2 O O1 EDO . . . D 3 -35.594 -45.213 4.81 1 64.74 ? O1 EDO 502 A 1 HETATM 3 C C2 EDO . . . D 3 -35.761 -47.077 6.267 1 66.77 ? C2 EDO 502 A 1 HETATM 4 O O2 EDO . . . D 3 -36.602 -47.427 7.374 1 70.03 ? O2 EDO 502 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #