data_8TYF
#
_model_server_result.job_id            5zjzzUEOZeWzP4bHIYR-IA 
_model_server_result.datetime_utc      '2024-10-18 01:18:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    8TYF 
#
_exptl.entry_id    8TYF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TYF 
_cell.length_a            60.72 
_cell.length_b            81.85 
_cell.length_c            192.876 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 90 1_555 A SG CYS 140 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 61 A CYS 93 1_555 A SG CYS 64 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 85 A CYS 117 1_555 A SG CYS 96 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 90 A CYS 122 1_555 A SG CYS 101 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 188 A CYS 220 1_555 A SG CYS 434 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 A SG CYS 305 A CYS 337 1_555 A SG CYS 350 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 A SG CYS 359 A CYS 391 1_555 A SG CYS 395 A CYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 248 A ASN 280 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 323 A ASN 355 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TYF 
_atom_sites.fract_transf_matrix[1][1]    0.016469 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012217 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 573 NAG NAG . 
C 2 NAG A 1 502 574 NAG NAG . 
D 3 T0F A 1 503 1 T0F M36 . 
E 4 EDO A 1 504 2 EDO EDO . 
F 5 HOH A 1 601 9 HOH HOH . 
F 5 HOH A 2 602 21 HOH HOH . 
F 5 HOH A 3 603 5 HOH HOH . 
F 5 HOH A 4 604 18 HOH HOH . 
F 5 HOH A 5 605 16 HOH HOH . 
F 5 HOH A 6 606 40 HOH HOH . 
F 5 HOH A 7 607 8 HOH HOH . 
F 5 HOH A 8 608 15 HOH HOH . 
F 5 HOH A 9 609 20 HOH HOH . 
F 5 HOH A 10 610 11 HOH HOH . 
F 5 HOH A 11 611 26 HOH HOH . 
F 5 HOH A 12 612 14 HOH HOH . 
F 5 HOH A 13 613 39 HOH HOH . 
F 5 HOH A 14 614 6 HOH HOH . 
F 5 HOH A 15 615 3 HOH HOH . 
F 5 HOH A 16 616 24 HOH HOH . 
F 5 HOH A 17 617 19 HOH HOH . 
F 5 HOH A 18 618 41 HOH HOH . 
F 5 HOH A 19 619 7 HOH HOH . 
F 5 HOH A 20 620 23 HOH HOH . 
F 5 HOH A 21 621 27 HOH HOH . 
F 5 HOH A 22 622 1 HOH HOH . 
F 5 HOH A 23 623 43 HOH HOH . 
F 5 HOH A 24 624 28 HOH HOH . 
F 5 HOH A 25 625 25 HOH HOH . 
F 5 HOH A 26 626 12 HOH HOH . 
F 5 HOH A 27 627 29 HOH HOH . 
F 5 HOH A 28 628 36 HOH HOH . 
F 5 HOH A 29 629 34 HOH HOH . 
F 5 HOH A 30 630 30 HOH HOH . 
F 5 HOH A 31 631 31 HOH HOH . 
F 5 HOH A 32 632 42 HOH HOH . 
F 5 HOH A 33 633 22 HOH HOH . 
F 5 HOH A 34 634 46 HOH HOH . 
F 5 HOH A 35 635 35 HOH HOH . 
F 5 HOH A 36 636 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 39.08 -1.895 45.596 1 122.34 ? C1 NAG 501 A 1 
HETATM 2 C C2 NAG . . . B 2 37.562 -1.73 45.598 1 125.6 ? C2 NAG 501 A 1 
HETATM 3 C C3 NAG . . . B 2 37.027 -1.809 47.021 1 119.36 ? C3 NAG 501 A 1 
HETATM 4 C C4 NAG . . . B 2 37.46 -3.119 47.664 1 128.46 ? C4 NAG 501 A 1 
HETATM 5 C C5 NAG . . . B 2 38.98 -3.263 47.593 1 132.26 ? C5 NAG 501 A 1 
HETATM 6 C C6 NAG . . . B 2 39.464 -4.608 48.083 1 140.66 ? C6 NAG 501 A 1 
HETATM 7 C C7 NAG . . . B 2 36.918 -0.379 43.655 1 129.63 ? C7 NAG 501 A 1 
HETATM 8 C C8 NAG . . . B 2 36.515 0.98 43.166 1 120.24 ? C8 NAG 501 A 1 
HETATM 9 N N2 NAG . . . B 2 37.164 -0.482 44.965 1 129.09 ? N2 NAG 501 A 1 
HETATM 10 O O3 NAG . . . B 2 35.607 -1.718 47.008 1 115.03 ? O3 NAG 501 A 1 
HETATM 11 O O4 NAG . . . B 2 37.037 -3.16 49.022 1 118.99 ? O4 NAG 501 A 1 
HETATM 12 O O5 NAG . . . B 2 39.431 -3.138 46.234 1 137.45 ? O5 NAG 501 A 1 
HETATM 13 O O6 NAG . . . B 2 39.243 -5.621 47.111 1 128.64 ? O6 NAG 501 A 1 
HETATM 14 O O7 NAG . . . B 2 37.019 -1.339 42.897 1 131.91 ? O7 NAG 501 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#