data_8TYF
#
_model_server_result.job_id            Crtsm89rCqmFuXFSu0Dciw 
_model_server_result.datetime_utc      '2024-10-18 01:21:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    8TYF 
#
_exptl.entry_id    8TYF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              467.898 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E,4aR,7aS)-6-[(3M)-3-(2-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TYF 
_cell.length_a            60.72 
_cell.length_b            81.85 
_cell.length_c            192.876 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 90 1_555 A SG CYS 140 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 61 A CYS 93 1_555 A SG CYS 64 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 85 A CYS 117 1_555 A SG CYS 96 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 90 A CYS 122 1_555 A SG CYS 101 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 188 A CYS 220 1_555 A SG CYS 434 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 A SG CYS 305 A CYS 337 1_555 A SG CYS 350 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 A SG CYS 359 A CYS 391 1_555 A SG CYS 395 A CYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 248 A ASN 280 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 323 A ASN 355 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C24 H20 Cl F2 N5 O' 
_chem_comp.formula_weight    467.898 
_chem_comp.id                T0F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E,4aR,7aS)-6-[(3M)-3-(2-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C T0F doub 329 n n 
C N T0F sing 330 n n 
C1 N T0F sing 331 n n 
C C2 T0F sing 332 n n 
C2 C3 T0F sing 333 n n 
C4 C3 T0F sing 334 n n 
N1 C4 T0F sing 335 n n 
C5 N1 T0F sing 336 n n 
C5 N2 T0F doub 337 n y 
N2 C6 T0F sing 338 n y 
C6 C7 T0F doub 339 n y 
C7 C8 T0F sing 340 n y 
C8 C9 T0F doub 341 n y 
C9 C5 T0F sing 342 n y 
C10 C9 T0F sing 343 n n 
C10 C11 T0F doub 344 n y 
CL C11 T0F sing 345 n n 
C11 C12 T0F sing 346 n y 
C12 C13 T0F doub 347 n y 
C13 C14 T0F sing 348 n y 
C14 C15 T0F doub 349 n y 
C15 C10 T0F sing 350 n y 
C16 N1 T0F sing 351 n n 
C2 C16 T0F sing 352 n n 
C3 C17 T0F sing 353 n n 
C17 C18 T0F doub 354 n y 
C18 C19 T0F sing 355 n y 
F C19 T0F sing 356 n n 
C19 C20 T0F doub 357 n y 
C20 C21 T0F sing 358 n y 
C21 C22 T0F doub 359 n y 
C17 C22 T0F sing 360 n y 
C22 F1 T0F sing 361 n n 
N3 C3 T0F sing 362 n n 
C23 N3 T0F sing 363 n n 
N C23 T0F sing 364 n n 
N4 C23 T0F doub 365 n n 
C14 H11 T0F sing 366 n n 
C13 H10 T0F sing 367 n n 
C12 H9 T0F sing 368 n n 
C8 H8 T0F sing 369 n n 
C4 H4 T0F sing 370 n n 
C4 H5 T0F sing 371 n n 
C6 H6 T0F sing 372 n n 
C15 H12 T0F sing 373 n n 
C20 H16 T0F sing 374 n n 
C21 H17 T0F sing 375 n n 
C1 H3 T0F sing 376 n n 
C1 H2 T0F sing 377 n n 
C1 H1 T0F sing 378 n n 
C2 H T0F sing 379 n n 
C16 H13 T0F sing 380 n n 
C16 H14 T0F sing 381 n n 
C18 H15 T0F sing 382 n n 
C7 H7 T0F sing 383 n n 
N3 H18 T0F sing 384 n n 
N4 H19 T0F sing 385 n n 
#
_atom_sites.entry_id                     8TYF 
_atom_sites.fract_transf_matrix[1][1]    0.016469 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012217 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 573 NAG NAG . 
C 2 NAG A 1 502 574 NAG NAG . 
D 3 T0F A 1 503 1 T0F M36 . 
E 4 EDO A 1 504 2 EDO EDO . 
F 5 HOH A 1 601 9 HOH HOH . 
F 5 HOH A 2 602 21 HOH HOH . 
F 5 HOH A 3 603 5 HOH HOH . 
F 5 HOH A 4 604 18 HOH HOH . 
F 5 HOH A 5 605 16 HOH HOH . 
F 5 HOH A 6 606 40 HOH HOH . 
F 5 HOH A 7 607 8 HOH HOH . 
F 5 HOH A 8 608 15 HOH HOH . 
F 5 HOH A 9 609 20 HOH HOH . 
F 5 HOH A 10 610 11 HOH HOH . 
F 5 HOH A 11 611 26 HOH HOH . 
F 5 HOH A 12 612 14 HOH HOH . 
F 5 HOH A 13 613 39 HOH HOH . 
F 5 HOH A 14 614 6 HOH HOH . 
F 5 HOH A 15 615 3 HOH HOH . 
F 5 HOH A 16 616 24 HOH HOH . 
F 5 HOH A 17 617 19 HOH HOH . 
F 5 HOH A 18 618 41 HOH HOH . 
F 5 HOH A 19 619 7 HOH HOH . 
F 5 HOH A 20 620 23 HOH HOH . 
F 5 HOH A 21 621 27 HOH HOH . 
F 5 HOH A 22 622 1 HOH HOH . 
F 5 HOH A 23 623 43 HOH HOH . 
F 5 HOH A 24 624 28 HOH HOH . 
F 5 HOH A 25 625 25 HOH HOH . 
F 5 HOH A 26 626 12 HOH HOH . 
F 5 HOH A 27 627 29 HOH HOH . 
F 5 HOH A 28 628 36 HOH HOH . 
F 5 HOH A 29 629 34 HOH HOH . 
F 5 HOH A 30 630 30 HOH HOH . 
F 5 HOH A 31 631 31 HOH HOH . 
F 5 HOH A 32 632 42 HOH HOH . 
F 5 HOH A 33 633 22 HOH HOH . 
F 5 HOH A 34 634 46 HOH HOH . 
F 5 HOH A 35 635 35 HOH HOH . 
F 5 HOH A 36 636 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 T0F . . . D 3 68.289 16.442 75.518 1 41.83 ? C10 T0F 503 A 1 
HETATM 2 C C9 T0F . . . D 3 67.532 15.157 75.562 1 52.84 ? C9 T0F 503 A 1 
HETATM 3 C C14 T0F . . . D 3 68.636 18.656 76.423 1 57.63 ? C14 T0F 503 A 1 
HETATM 4 C C13 T0F . . . D 3 69.704 18.85 75.576 1 45.89 ? C13 T0F 503 A 1 
HETATM 5 C C12 T0F . . . D 3 70.08 17.858 74.692 1 47.55 ? C12 T0F 503 A 1 
HETATM 6 C C11 T0F . . . D 3 69.373 16.672 74.668 1 48.74 ? C11 T0F 503 A 1 
HETATM 7 C C8 T0F . . . D 3 67.576 14.451 76.763 1 48.49 ? C8 T0F 503 A 1 
HETATM 8 C C5 T0F . . . D 3 66.778 14.577 74.489 1 63.21 ? C5 T0F 503 A 1 
HETATM 9 C C4 T0F . . . D 3 66.542 16.609 72.997 1 51.87 ? C4 T0F 503 A 1 
HETATM 10 C C3 T0F . . . D 3 65.625 16.627 71.762 1 48.4 ? C3 T0F 503 A 1 
HETATM 11 C C6 T0F . . . D 3 66.228 12.758 75.782 1 66.35 ? C6 T0F 503 A 1 
HETATM 12 C C15 T0F . . . D 3 67.931 17.466 76.396 1 41.12 ? C15 T0F 503 A 1 
HETATM 13 C C19 T0F . . . D 3 64.606 19.806 69.976 1 44.36 ? C19 T0F 503 A 1 
HETATM 14 C C20 T0F . . . D 3 65.782 20.307 69.492 1 44.73 ? C20 T0F 503 A 1 
HETATM 15 C C21 T0F . . . D 3 66.946 19.619 69.752 1 51.31 ? C21 T0F 503 A 1 
HETATM 16 C C22 T0F . . . D 3 66.867 18.453 70.485 1 52.68 ? C22 T0F 503 A 1 
HETATM 17 C C1 T0F . . . D 3 62.828 14.555 69.246 1 45.04 ? C1 T0F 503 A 1 
HETATM 18 C C2 T0F . . . D 3 66.134 15.398 70.957 1 52.23 ? C2 T0F 503 A 1 
HETATM 19 N N T0F . . . D 3 63.816 15.006 70.23 1 47.05 ? N T0F 503 A 1 
HETATM 20 C C T0F . . . D 3 65.149 14.887 69.924 1 50.12 ? C T0F 503 A 1 
HETATM 21 O O T0F . . . D 3 65.526 14.408 68.869 1 56.02 ? O T0F 503 A 1 
HETATM 22 C C16 T0F . . . D 3 66.399 14.36 72.053 1 51.08 ? C16 T0F 503 A 1 
HETATM 23 C C17 T0F . . . D 3 65.689 17.93 70.974 1 45.57 ? C17 T0F 503 A 1 
HETATM 24 C C18 T0F . . . D 3 64.522 18.642 70.71 1 41.85 ? C18 T0F 503 A 1 
HETATM 25 C C23 T0F . . . D 3 63.41 15.517 71.453 1 45.08 ? C23 T0F 503 A 1 
HETATM 26 C C7 T0F . . . D 3 66.914 13.241 76.872 1 60.95 ? C7 T0F 503 A 1 
HETATM 27 F F T0F . . . D 3 63.456 20.486 69.724 1 50.21 ? F T0F 503 A 1 
HETATM 28 F F1 T0F . . . D 3 68.025 17.801 70.733 1 55.93 ? F1 T0F 503 A 1 
HETATM 29 N N1 T0F . . . D 3 66.604 15.166 73.258 1 51.01 ? N1 T0F 503 A 1 
HETATM 30 N N2 T0F . . . D 3 66.149 13.398 74.608 1 65.71 ? N2 T0F 503 A 1 
HETATM 31 N N3 T0F . . . D 3 64.254 16.29 72.161 1 48.68 ? N3 T0F 503 A 1 
HETATM 32 N N4 T0F . . . D 3 62.252 15.132 71.865 1 41.55 ? N4 T0F 503 A 1 
HETATM 33 CL CL T0F . . . D 3 69.864 15.458 73.532 1 65.46 ? CL T0F 503 A 1 
HETATM 34 H H11 T0F . . . D 3 68.34 19.439 77.119 1 69.12 ? H11 T0F 503 A 1 
HETATM 35 H H10 T0F . . . D 3 70.257 19.788 75.601 1 55.03 ? H10 T0F 503 A 1 
HETATM 36 H H9 T0F . . . D 3 70.922 18 74.017 1 57.03 ? H9 T0F 503 A 1 
HETATM 37 H H8 T0F . . . D 3 68.131 14.857 77.607 1 58.16 ? H8 T0F 503 A 1 
HETATM 38 H H4 T0F . . . D 3 66.164 17.163 73.855 1 62.21 ? H4 T0F 503 A 1 
HETATM 39 H H5 T0F . . . D 3 67.531 17.037 72.839 1 62.21 ? H5 T0F 503 A 1 
HETATM 40 H H6 T0F . . . D 3 65.697 11.808 75.81 1 79.58 ? H6 T0F 503 A 1 
HETATM 41 H H12 T0F . . . D 3 67.085 17.317 77.065 1 49.31 ? H12 T0F 503 A 1 
HETATM 42 H H16 T0F . . . D 3 65.801 21.229 68.914 1 53.64 ? H16 T0F 503 A 1 
HETATM 43 H H17 T0F . . . D 3 67.898 19.996 69.382 1 61.53 ? H17 T0F 503 A 1 
HETATM 44 H H3 T0F . . . D 3 63.192 14.659 68.225 1 54.02 ? H3 T0F 503 A 1 
HETATM 45 H H2 T0F . . . D 3 61.901 15.123 69.309 1 54.02 ? H2 T0F 503 A 1 
HETATM 46 H H1 T0F . . . D 3 62.566 13.507 69.382 1 54.02 ? H1 T0F 503 A 1 
HETATM 47 H H T0F . . . D 3 67.069 15.575 70.428 1 62.64 ? H T0F 503 A 1 
HETATM 48 H H13 T0F . . . D 3 65.568 13.667 72.174 1 61.26 ? H13 T0F 503 A 1 
HETATM 49 H H14 T0F . . . D 3 67.269 13.743 71.834 1 61.26 ? H14 T0F 503 A 1 
HETATM 50 H H15 T0F . . . D 3 63.54 18.324 71.056 1 50.19 ? H15 T0F 503 A 1 
HETATM 51 H H7 T0F . . . D 3 66.938 12.683 77.807 1 73.11 ? H7 T0F 503 A 1 
HETATM 52 H H18 T0F . . . D 3 63.937 16.68 73.042 1 58.38 ? H18 T0F 503 A 1 
HETATM 53 H H19 T0F . . . D 3 61.966 15.392 72.804 1 49.82 ? H19 T0F 503 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#