data_8TZ1 # _model_server_result.job_id QdU3owsymDqTdUNfnH62WA _model_server_result.datetime_utc '2024-10-25 20:25:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":801}' # _entry.id 8TZ1 # _exptl.entry_id 8TZ1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 244.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TZ1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 K N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 357 A ASN 342 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A O ILE 360 A ILE 345 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc3 A O SER 390 A SER 375 1_555 F NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 A OG1 THR 391 A THR 376 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 A O ILE 392 A ILE 377 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc6 A OG SER 417 A SER 402 1_555 F NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc7 A O CYS 582 A CYS 567 1_555 F NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc8 E NA NA . A NA 802 1_555 Y O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc9 F NA NA . A NA 803 1_555 Y O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc10 B O ASN 357 C ASN 342 1_555 L NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc11 B O ILE 360 C ILE 345 1_555 L NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc12 B O SER 390 C SER 375 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc13 B OG1 THR 391 C THR 376 1_555 L NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc14 B O ILE 392 C ILE 377 1_555 L NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc15 B OG SER 417 C SER 402 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc16 B O CYS 582 C CYS 567 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc17 L NA NA . C NA 802 1_555 Z O HOH . C HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc18 M NA NA . C NA 803 1_555 Z O HOH . C HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc19 C O ASN 357 B ASN 342 1_555 S NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc20 C O ILE 360 B ILE 345 1_555 S NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc21 C O SER 390 B SER 375 1_555 T NA NA . B NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc22 C OG1 THR 391 B THR 376 1_555 S NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc23 C O ILE 392 B ILE 377 1_555 S NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc24 C OG SER 417 B SER 402 1_555 T NA NA . B NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc25 C O CYS 582 B CYS 567 1_555 T NA NA . B NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc26 S NA NA . B NA 802 1_555 AA O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc27 T NA NA . B NA 803 1_555 AA O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C8 H12 N4 O5' _chem_comp.formula_weight 244.205 _chem_comp.id RBV _chem_comp.mon_nstd_flag . _chem_comp.name 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ribavirin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N2 RBV sing 410 n y N1 C5 RBV sing 411 n y N1 C1' RBV sing 412 n n N2 C3 RBV doub 413 n y C3 N4 RBV sing 414 n y C3 C6 RBV sing 415 n n N3 C6 RBV sing 416 n n O3 C6 RBV doub 417 n n N4 C5 RBV doub 418 n y C1' C2' RBV sing 419 n n C1' O4' RBV sing 420 n n C2' O2' RBV sing 421 n n C2' C3' RBV sing 422 n n C3' O3' RBV sing 423 n n C3' C4' RBV sing 424 n n C4' O4' RBV sing 425 n n C4' C5' RBV sing 426 n n C5' O5' RBV sing 427 n n N3 HN3 RBV sing 428 n n N3 HN3A RBV sing 429 n n C5 H5 RBV sing 430 n n C1' H1' RBV sing 431 n n C2' H2' RBV sing 432 n n O2' HO2' RBV sing 433 n n C3' H3' RBV sing 434 n n O3' HO3' RBV sing 435 n n C4' H4' RBV sing 436 n n C5' H5' RBV sing 437 n n C5' "H5'A" RBV sing 438 n n O5' HO5' RBV sing 439 n n # _atom_sites.entry_id 8TZ1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RBV A 1 801 701 RBV RIB . E 3 NA A 1 802 801 NA NA . F 3 NA A 1 803 802 NA NA . G 4 LBN A 1 804 1000 LBN LBN . H 4 LBN A 1 805 1001 LBN LBN . I 4 LBN A 1 806 1002 LBN LBN . J 4 LBN A 1 807 1003 LBN LBN . K 2 RBV C 1 801 701 RBV RIB . L 3 NA C 1 802 801 NA NA . M 3 NA C 1 803 802 NA NA . N 4 LBN C 1 804 1000 LBN LBN . O 4 LBN C 1 805 1001 LBN LBN . P 4 LBN C 1 806 1002 LBN LBN . Q 4 LBN C 1 807 1003 LBN LBN . R 2 RBV B 1 801 701 RBV RIB . S 3 NA B 1 802 801 NA NA . T 3 NA B 1 803 802 NA NA . U 4 LBN B 1 804 1000 LBN LBN . V 4 LBN B 1 805 1001 LBN LBN . W 4 LBN B 1 806 1002 LBN LBN . X 4 LBN B 1 807 1003 LBN LBN . Y 5 HOH A 1 901 901 HOH HOH . Y 5 HOH A 2 902 902 HOH HOH . Z 5 HOH C 1 901 901 HOH HOH . Z 5 HOH C 2 902 902 HOH HOH . AA 5 HOH B 1 901 901 HOH HOH . AA 5 HOH B 2 902 902 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBV . . . K 2 147.413 125.123 136.644 1 77.91 ? N1 RBV 801 C 1 HETATM 2 N N2 RBV . . . K 2 147.984 125.549 135.476 1 77.91 ? N2 RBV 801 C 1 HETATM 3 C C3 RBV . . . K 2 149.007 126.277 135.781 1 77.91 ? C3 RBV 801 C 1 HETATM 4 N N3 RBV . . . K 2 151.002 127.862 135.281 1 77.91 ? N3 RBV 801 C 1 HETATM 5 O O3 RBV . . . K 2 149.854 126.804 133.611 1 77.91 ? O3 RBV 801 C 1 HETATM 6 N N4 RBV . . . K 2 149.098 126.326 137.123 1 77.91 ? N4 RBV 801 C 1 HETATM 7 C C5 RBV . . . K 2 148.093 125.599 137.635 1 77.91 ? C5 RBV 801 C 1 HETATM 8 C C6 RBV . . . K 2 149.967 126.981 134.775 1 77.91 ? C6 RBV 801 C 1 HETATM 9 C C1' RBV . . . K 2 146.334 124.35 136.727 1 77.91 ? C1' RBV 801 C 1 HETATM 10 C C2' RBV . . . K 2 146.675 122.852 136.291 1 77.91 ? C2' RBV 801 C 1 HETATM 11 O O2' RBV . . . K 2 145.58 122.307 135.344 1 77.91 ? O2' RBV 801 C 1 HETATM 12 C C3' RBV . . . K 2 146.663 122.21 137.313 1 77.91 ? C3' RBV 801 C 1 HETATM 13 O O3' RBV . . . K 2 146.131 120.805 137.04 1 77.91 ? O3' RBV 801 C 1 HETATM 14 C C4' RBV . . . K 2 145.626 123.025 138.328 1 77.91 ? C4' RBV 801 C 1 HETATM 15 O O4' RBV . . . K 2 145.872 124.258 138.146 1 77.91 ? O4' RBV 801 C 1 HETATM 16 C C5' RBV . . . K 2 145.924 122.646 139.772 1 77.91 ? C5' RBV 801 C 1 HETATM 17 O O5' RBV . . . K 2 147.041 123.404 140.214 1 77.91 ? O5' RBV 801 C 1 HETATM 18 H HN3 RBV . . . K 2 151.626 128.323 134.642 1 77.91 ? HN3 RBV 801 C 1 HETATM 19 H HN3A RBV . . . K 2 151.094 128.009 136.273 1 77.91 ? HN3A RBV 801 C 1 HETATM 20 H H5 RBV . . . K 2 147.896 125.448 138.657 1 77.91 ? H5 RBV 801 C 1 HETATM 21 H H1' RBV . . . K 2 145.539 124.757 136.096 1 77.91 ? H1' RBV 801 C 1 HETATM 22 H H2' RBV . . . K 2 147.668 122.803 135.805 1 77.91 ? H2' RBV 801 C 1 HETATM 23 H HO2' RBV . . . K 2 145.613 122.778 134.533 1 77.91 ? HO2' RBV 801 C 1 HETATM 24 H H3' RBV . . . K 2 147.652 122.162 137.758 1 77.91 ? H3' RBV 801 C 1 HETATM 25 H HO3' RBV . . . K 2 146.784 120.302 136.56 1 77.91 ? HO3' RBV 801 C 1 HETATM 26 H H4' RBV . . . K 2 144.635 122.809 138.079 1 77.91 ? H4' RBV 801 C 1 HETATM 27 H H5' RBV . . . K 2 146.166 121.564 139.832 1 77.91 ? H5' RBV 801 C 1 HETATM 28 H "H5'A" RBV . . . K 2 145.052 122.871 140.397 1 77.91 ? "H5'A" RBV 801 C 1 HETATM 29 H HO5' RBV . . . K 2 146.801 124.347 140.262 1 77.91 ? HO5' RBV 801 C 1 # _model_server_stats.io_time_ms 132 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 29 #