data_8TZ4 # _model_server_result.job_id f1Cuz6oagfpKEpGPYZwCAA _model_server_result.datetime_utc '2024-11-26 22:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 8TZ4 # _exptl.entry_id 8TZ4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 291.263 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TZ4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H13 N5 O4' _chem_comp.formula_weight 291.263 _chem_comp.id U08 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Remdesivir, reacted form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C6 U08 sing 356 n n O3 C3 U08 sing 357 n n C6 C4 U08 sing 358 n n C3 C4 U08 sing 359 n n C3 C2 U08 sing 360 n n C4 O1 U08 sing 361 n n C2 O2 U08 sing 362 n n C2 C1 U08 sing 363 n n O1 C1 U08 sing 364 n n C1 C8 U08 sing 365 n n C1 C5 U08 sing 366 n n C8 N3 U08 trip 367 n n C5 C7 U08 doub 368 n y C5 N1 U08 sing 369 n y C7 C10 U08 sing 370 n y N2 N1 U08 sing 371 n y N2 C12 U08 doub 372 n y N1 C9 U08 sing 373 n y C12 N4 U08 sing 374 n y C10 C9 U08 doub 375 n y C9 C11 U08 sing 376 n y N4 C11 U08 doub 377 n y C11 N5 U08 sing 378 n n C6 H1 U08 sing 379 n n C6 H2 U08 sing 380 n n C2 H3 U08 sing 381 n n C4 H4 U08 sing 382 n n O2 H5 U08 sing 383 n n O4 H6 U08 sing 384 n n C7 H7 U08 sing 385 n n C10 H8 U08 sing 386 n n C12 H9 U08 sing 387 n n C3 H10 U08 sing 388 n n N5 H11 U08 sing 389 n n N5 H12 U08 sing 390 n n O3 H13 U08 sing 391 n n # _atom_sites.entry_id 8TZ4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id U08 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 801 _pdbx_nonpoly_scheme.auth_seq_num 701 _pdbx_nonpoly_scheme.pdb_mon_id U08 _pdbx_nonpoly_scheme.auth_mon_id GS4 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 U08 . . . D 2 126.591 146.618 137.652 1 44.46 ? C8 U08 801 A 1 HETATM 2 C C5 U08 . . . D 2 124.314 145.705 138.317 1 44.46 ? C5 U08 801 A 1 HETATM 3 C C6 U08 . . . D 2 124.449 149.08 141.395 1 44.46 ? C6 U08 801 A 1 HETATM 4 N N1 U08 . . . D 2 124.097 144.862 137.214 1 44.46 ? N1 U08 801 A 1 HETATM 5 C C2 U08 . . . D 2 124.662 147.946 137.821 1 44.46 ? C2 U08 801 A 1 HETATM 6 N N3 U08 . . . D 2 127.597 146.388 137.119 1 44.46 ? N3 U08 801 A 1 HETATM 7 C C4 U08 . . . D 2 125.052 148.838 139.973 1 44.46 ? C4 U08 801 A 1 HETATM 8 O O2 U08 . . . D 2 125.575 148.636 136.942 1 44.46 ? O2 U08 801 A 1 HETATM 9 N N2 U08 . . . D 2 124.649 144.909 135.934 1 44.46 ? N2 U08 801 A 1 HETATM 10 O O4 U08 . . . D 2 123.541 148.001 141.697 1 44.46 ? O4 U08 801 A 1 HETATM 11 N N4 U08 . . . D 2 123.394 142.986 135.317 1 44.46 ? N4 U08 801 A 1 HETATM 12 C C7 U08 . . . D 2 123.535 145.241 139.347 1 44.46 ? C7 U08 801 A 1 HETATM 13 C C1 U08 . . . D 2 125.247 146.925 138.367 1 44.46 ? C1 U08 801 A 1 HETATM 14 C C10 U08 . . . D 2 122.858 144.138 138.887 1 44.46 ? C10 U08 801 A 1 HETATM 15 C C11 U08 . . . D 2 122.866 142.944 136.55 1 44.46 ? C11 U08 801 A 1 HETATM 16 C C12 U08 . . . D 2 124.287 143.963 134.995 1 44.46 ? C12 U08 801 A 1 HETATM 17 C C3 U08 . . . D 2 124.186 148.982 139.08 1 44.46 ? C3 U08 801 A 1 HETATM 18 C C9 U08 . . . D 2 123.243 143.93 137.527 1 44.46 ? C9 U08 801 A 1 HETATM 19 N N5 U08 . . . D 2 121.877 141.862 136.909 1 44.46 ? N5 U08 801 A 1 HETATM 20 O O1 U08 . . . D 2 125.52 147.306 139.843 1 44.46 ? O1 U08 801 A 1 HETATM 21 O O3 U08 . . . D 2 124.183 150.344 138.623 1 44.46 ? O3 U08 801 A 1 HETATM 22 H H1 U08 . . . D 2 125.242 149.099 142.125 1 44.46 ? H1 U08 801 A 1 HETATM 23 H H2 U08 . . . D 2 123.916 150.045 141.407 1 44.46 ? H2 U08 801 A 1 HETATM 24 H H3 U08 . . . D 2 123.822 147.627 137.293 1 44.46 ? H3 U08 801 A 1 HETATM 25 H H4 U08 . . . D 2 125.881 149.498 139.794 1 44.46 ? H4 U08 801 A 1 HETATM 26 H H5 U08 . . . D 2 125.117 149.386 136.52 1 44.46 ? H5 U08 801 A 1 HETATM 27 H H6 U08 . . . D 2 122.705 148.364 142.077 1 44.46 ? H6 U08 801 A 1 HETATM 28 H H7 U08 . . . D 2 123.465 145.678 140.373 1 44.46 ? H7 U08 801 A 1 HETATM 29 H H8 U08 . . . D 2 122.152 143.526 139.456 1 44.46 ? H8 U08 801 A 1 HETATM 30 H H9 U08 . . . D 2 124.718 143.998 133.992 1 44.46 ? H9 U08 801 A 1 HETATM 31 H H10 U08 . . . D 2 123.162 148.69 139.458 1 44.46 ? H10 U08 801 A 1 HETATM 32 H H11 U08 . . . D 2 121.166 142.049 137.507 1 44.46 ? H11 U08 801 A 1 HETATM 33 H H12 U08 . . . D 2 121.977 140.922 136.51 1 44.46 ? H12 U08 801 A 1 HETATM 34 H H13 U08 . . . D 2 123.509 150.806 139.04 1 44.46 ? H13 U08 801 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #