data_8TZ5 # _model_server_result.job_id CHcJO0UyzTSk_mHpOlfe0A _model_server_result.datetime_utc '2025-08-31 06:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":805}' # _entry.id 8TZ5 # _exptl.entry_id 8TZ5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TZ5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 357 A ASN 342 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A OD1 ASN 357 A ASN 342 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 A O ILE 360 A ILE 345 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 A OG1 THR 391 A THR 376 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 A O ILE 392 A ILE 377 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc6 B O ASN 357 B ASN 342 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc7 B OD1 ASN 357 B ASN 342 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc8 B O ILE 360 B ILE 345 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc9 B OG1 THR 391 B THR 376 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc10 B O ILE 392 B ILE 377 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc11 C O ASN 357 C ASN 342 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 C OD1 ASN 357 C ASN 342 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc13 C O ILE 360 C ILE 345 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc14 C OG1 THR 391 C THR 376 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc15 C O ILE 392 C ILE 377 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 171 n n O3 P1 LBN sing 172 n n O2 C9 LBN sing 173 n n O2 P1 LBN sing 174 n n C9 C6 LBN sing 175 n n O4 P1 LBN doub 176 n n P1 O1 LBN sing 177 n n C6 N1 LBN sing 178 n n N1 C15 LBN sing 179 n n N1 C18 LBN sing 180 n n O1 C1 LBN sing 181 n n C2 C1 LBN sing 182 n n C2 C3 LBN sing 183 n n C2 O7 LBN sing 184 n n C3 O5 LBN sing 185 n n O6 C25 LBN doub 186 n n O5 C25 LBN sing 187 n n O7 C34 LBN sing 188 n n C25 C26 LBN sing 189 n n C34 C35 LBN sing 190 n n C34 O8 LBN doub 191 n n C26 C27 LBN sing 192 n n C35 C36 LBN sing 193 n n C27 C28 LBN sing 194 n n C36 C37 LBN sing 195 n n C28 C29 LBN sing 196 n n C37 C38 LBN sing 197 n n C29 C30 LBN sing 198 n n C39 C38 LBN sing 199 n n C39 C40 LBN sing 200 n n C41 C40 LBN sing 201 n n C41 C42 LBN sing 202 n n C30 C31 LBN sing 203 n n C42 C5 LBN doub 204 z n C31 C32 LBN sing 205 n n C5 C8 LBN sing 206 n n C8 C11 LBN sing 207 n n C32 C33 LBN sing 208 n n C11 C14 LBN sing 209 n n C33 C4 LBN sing 210 n n C14 C17 LBN sing 211 n n C4 C7 LBN sing 212 n n C17 C20 LBN sing 213 n n C7 C10 LBN sing 214 n n C20 C22 LBN sing 215 n n C10 C13 LBN sing 216 n n C22 C23 LBN sing 217 n n C13 C16 LBN sing 218 n n C23 C24 LBN sing 219 n n C16 C19 LBN sing 220 n n C19 C21 LBN sing 221 n n C1 H1 LBN sing 222 n n C1 H2 LBN sing 223 n n C2 H3 LBN sing 224 n n C3 H4 LBN sing 225 n n C3 H5 LBN sing 226 n n C4 H6 LBN sing 227 n n C4 H7 LBN sing 228 n n C5 H8 LBN sing 229 n n C6 H9 LBN sing 230 n n C6 H10 LBN sing 231 n n C7 H11 LBN sing 232 n n C7 H12 LBN sing 233 n n C8 H13 LBN sing 234 n n C8 H14 LBN sing 235 n n C9 H15 LBN sing 236 n n C9 H16 LBN sing 237 n n C10 H17 LBN sing 238 n n C10 H18 LBN sing 239 n n C11 H19 LBN sing 240 n n C12 H20 LBN sing 241 n n C12 H21 LBN sing 242 n n C12 H22 LBN sing 243 n n C13 H23 LBN sing 244 n n C13 H24 LBN sing 245 n n C14 H25 LBN sing 246 n n C15 H26 LBN sing 247 n n C15 H27 LBN sing 248 n n C15 H28 LBN sing 249 n n C16 H30 LBN sing 250 n n C16 H31 LBN sing 251 n n C17 H32 LBN sing 252 n n C17 H33 LBN sing 253 n n C18 H34 LBN sing 254 n n C18 H35 LBN sing 255 n n C18 H36 LBN sing 256 n n C19 H37 LBN sing 257 n n C19 H38 LBN sing 258 n n C20 H39 LBN sing 259 n n C20 H40 LBN sing 260 n n C21 H41 LBN sing 261 n n C21 H42 LBN sing 262 n n C21 H43 LBN sing 263 n n C22 H44 LBN sing 264 n n C22 H45 LBN sing 265 n n C23 H46 LBN sing 266 n n C23 H47 LBN sing 267 n n C24 H48 LBN sing 268 n n C24 H49 LBN sing 269 n n C24 H50 LBN sing 270 n n C26 H51 LBN sing 271 n n C26 H52 LBN sing 272 n n C27 H53 LBN sing 273 n n C27 H54 LBN sing 274 n n C28 H55 LBN sing 275 n n C28 H56 LBN sing 276 n n C29 H57 LBN sing 277 n n C29 H58 LBN sing 278 n n C30 H59 LBN sing 279 n n C30 H60 LBN sing 280 n n C31 H61 LBN sing 281 n n C31 H62 LBN sing 282 n n C32 H63 LBN sing 283 n n C32 H64 LBN sing 284 n n C33 H65 LBN sing 285 n n C33 H66 LBN sing 286 n n C35 H67 LBN sing 287 n n C35 H68 LBN sing 288 n n C36 H69 LBN sing 289 n n C36 H70 LBN sing 290 n n C37 H71 LBN sing 291 n n C37 H72 LBN sing 292 n n C38 H73 LBN sing 293 n n C38 H74 LBN sing 294 n n C39 H75 LBN sing 295 n n C40 H76 LBN sing 296 n n C41 H77 LBN sing 297 n n C41 H78 LBN sing 298 n n C42 H79 LBN sing 299 n n C11 H80 LBN sing 300 n n C14 H81 LBN sing 301 n n C39 H82 LBN sing 302 n n C40 H83 LBN sing 303 n n # _atom_sites.entry_id 8TZ5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 U56 A 1 801 701 U56 NHC . E 3 NA A 1 802 801 NA NA . F 4 LBN A 1 803 1001 LBN LBN . G 4 LBN A 1 804 1002 LBN LBN . H 4 LBN A 1 805 1003 LBN LBN . I 4 LBN A 1 806 1004 LBN LBN . J 2 U56 B 1 801 701 U56 NHC . K 3 NA B 1 802 801 NA NA . L 4 LBN B 1 803 1001 LBN LBN . M 4 LBN B 1 804 1002 LBN LBN . N 4 LBN B 1 805 1003 LBN LBN . O 4 LBN B 1 806 1004 LBN LBN . P 2 U56 C 1 801 701 U56 NHC . Q 3 NA C 1 802 801 NA NA . R 4 LBN C 1 803 1001 LBN LBN . S 4 LBN C 1 804 1002 LBN LBN . T 4 LBN C 1 805 1003 LBN LBN . U 4 LBN C 1 806 1004 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . N 4 139.84 112.217 155.618 1 44.82 ? C1 LBN 805 B 1 HETATM 2 P P1 LBN . . . N 4 138.053 111.113 157.231 1 64.8 ? P1 LBN 805 B 1 HETATM 3 C C2 LBN . . . N 4 139.166 112.094 154.24 1 45.02 ? C2 LBN 805 B 1 HETATM 4 C C3 LBN . . . N 4 139.226 110.671 153.723 1 40.8 ? C3 LBN 805 B 1 HETATM 5 C C5 LBN . . . N 4 133.901 118.061 146.041 1 44.18 ? C5 LBN 805 B 1 HETATM 6 O O1 LBN . . . N 4 138.842 112.434 156.589 1 48.76 ? O1 LBN 805 B 1 HETATM 7 C C8 LBN . . . N 4 133.378 119.319 146.758 1 42.89 ? C8 LBN 805 B 1 HETATM 8 O O2 LBN . . . N 4 139.068 110.129 157.763 1 45.45 ? O2 LBN 805 B 1 HETATM 9 O O3 LBN . . . N 4 137.225 110.452 156.156 1 46.12 ? O3 LBN 805 B 1 HETATM 10 O O4 LBN . . . N 4 137.069 111.608 158.454 1 45.93 ? O4 LBN 805 B 1 HETATM 11 C C25 LBN . . . N 4 139.849 109.88 151.599 1 43.6 ? C25 LBN 805 B 1 HETATM 12 O O5 LBN . . . N 4 140.235 110.59 152.752 1 38.64 ? O5 LBN 805 B 1 HETATM 13 C C26 LBN . . . N 4 140.245 110.41 150.215 1 45.37 ? C26 LBN 805 B 1 HETATM 14 O O6 LBN . . . N 4 139.215 108.885 151.692 1 47.68 ? O6 LBN 805 B 1 HETATM 15 C C27 LBN . . . N 4 140.683 109.286 149.256 1 43.98 ? C27 LBN 805 B 1 HETATM 16 C C28 LBN . . . N 4 141.034 109.828 147.858 1 44.22 ? C28 LBN 805 B 1 HETATM 17 C C34 LBN . . . N 4 137.296 113.154 153.199 1 43.86 ? C34 LBN 805 B 1 HETATM 18 O O7 LBN . . . N 4 137.803 112.466 154.344 1 48 ? O7 LBN 805 B 1 HETATM 19 C C35 LBN . . . N 4 136.664 112.351 152.024 1 40.48 ? C35 LBN 805 B 1 HETATM 20 O O8 LBN . . . N 4 137.367 114.336 153.138 1 45.31 ? O8 LBN 805 B 1 HETATM 21 C C36 LBN . . . N 4 135.656 113.185 151.198 1 39.02 ? C36 LBN 805 B 1 HETATM 22 C C37 LBN . . . N 4 136.294 113.83 149.958 1 43.21 ? C37 LBN 805 B 1 HETATM 23 C C38 LBN . . . N 4 135.284 114.23 148.868 1 44.9 ? C38 LBN 805 B 1 HETATM 24 C C39 LBN . . . N 4 133.876 114.534 149.406 1 44.94 ? C39 LBN 805 B 1 HETATM 25 C C40 LBN . . . N 4 133.007 115.271 148.381 1 43.43 ? C40 LBN 805 B 1 HETATM 26 C C41 LBN . . . N 4 133.485 116.726 148.138 1 46.13 ? C41 LBN 805 B 1 HETATM 27 C C42 LBN . . . N 4 133.95 116.874 146.671 1 42.21 ? C42 LBN 805 B 1 HETATM 28 H H1 LBN . . . N 4 140.391 111.316 155.855 1 43.24 ? H1 LBN 805 B 1 HETATM 29 H H2 LBN . . . N 4 140.519 113.062 155.61 1 42.41 ? H2 LBN 805 B 1 HETATM 30 H H3 LBN . . . N 4 139.665 112.75 153.538 1 42.77 ? H3 LBN 805 B 1 HETATM 31 H H4 LBN . . . N 4 138.272 110.418 153.274 1 43.24 ? H4 LBN 805 B 1 HETATM 32 H H5 LBN . . . N 4 139.437 109.98 154.532 1 42.44 ? H5 LBN 805 B 1 HETATM 33 H H8 LBN . . . N 4 134.235 118.133 145.012 1 42.56 ? H8 LBN 805 B 1 HETATM 34 H H13 LBN . . . N 4 134.179 119.759 147.342 1 41.55 ? H13 LBN 805 B 1 HETATM 35 H H14 LBN . . . N 4 133.028 120.036 146.022 1 41.39 ? H14 LBN 805 B 1 HETATM 36 H H51 LBN . . . N 4 141.065 111.111 150.331 1 44.07 ? H51 LBN 805 B 1 HETATM 37 H H52 LBN . . . N 4 139.396 110.931 149.784 1 43.18 ? H52 LBN 805 B 1 HETATM 38 H H53 LBN . . . N 4 141.55 108.784 149.671 1 42.99 ? H53 LBN 805 B 1 HETATM 39 H H54 LBN . . . N 4 139.871 108.57 149.161 1 42.97 ? H54 LBN 805 B 1 HETATM 40 H H55 LBN . . . N 4 142.107 109.978 147.799 1 43.33 ? H55 LBN 805 B 1 HETATM 41 H H56 LBN . . . N 4 140.543 110.784 147.726 1 43.53 ? H56 LBN 805 B 1 HETATM 42 H H67 LBN . . . N 4 136.147 111.489 152.432 1 42.8 ? H67 LBN 805 B 1 HETATM 43 H H68 LBN . . . N 4 137.459 112.006 151.369 1 42.88 ? H68 LBN 805 B 1 HETATM 44 H H69 LBN . . . N 4 135.245 113.966 151.827 1 41.8 ? H69 LBN 805 B 1 HETATM 45 H H70 LBN . . . N 4 134.855 112.527 150.88 1 41.92 ? H70 LBN 805 B 1 HETATM 46 H H71 LBN . . . N 4 136.83 114.717 150.274 1 42.14 ? H71 LBN 805 B 1 HETATM 47 H H72 LBN . . . N 4 137.001 113.136 149.528 1 43.28 ? H72 LBN 805 B 1 HETATM 48 H H73 LBN . . . N 4 135.209 113.42 148.148 1 43.51 ? H73 LBN 805 B 1 HETATM 49 H H74 LBN . . . N 4 135.658 115.111 148.359 1 42.39 ? H74 LBN 805 B 1 HETATM 50 H H75 LBN . . . N 4 133.389 113.604 149.663 1 42.66 ? H75 LBN 805 B 1 HETATM 51 H H76 LBN . . . N 4 133.036 114.729 147.444 1 43.58 ? H76 LBN 805 B 1 HETATM 52 H H77 LBN . . . N 4 134.312 116.948 148.804 1 42.15 ? H77 LBN 805 B 1 HETATM 53 H H78 LBN . . . N 4 132.668 117.402 148.342 1 42.42 ? H78 LBN 805 B 1 HETATM 54 H H79 LBN . . . N 4 134.325 116.006 146.138 1 42.13 ? H79 LBN 805 B 1 HETATM 55 H H82 LBN . . . N 4 133.961 115.148 150.293 1 42.03 ? H82 LBN 805 B 1 HETATM 56 H H83 LBN . . . N 4 131.982 115.292 148.739 1 42.07 ? H83 LBN 805 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 56 #