data_8TZ6
#
_model_server_result.job_id            T4qDntOnEJpVX8iL8iM0Aw 
_model_server_result.datetime_utc      '2025-08-31 20:21:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    8TZ6 
#
_exptl.entry_id    8TZ6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              260.219 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-deoxy-2'-fluoro-2'-methyluridine" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TZ6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 J N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASN 357 A ASN 342 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc2 A OD1 ASN 357 A ASN 342 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc3 A O ILE 360 A ILE 345 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc4 A OG1 THR 391 A THR 376 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc5 A O ILE 392 A ILE 377 1_555 E NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? 
metalc ? metalc6 B O ASN 357 B ASN 342 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc7 B OD1 ASN 357 B ASN 342 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc8 B O ILE 360 B ILE 345 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc9 B OG1 THR 391 B THR 376 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc10 B O ILE 392 B ILE 377 1_555 K NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
metalc ? metalc11 C O ASN 357 C ASN 342 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc12 C OD1 ASN 357 C ASN 342 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc13 C O ILE 360 C ILE 345 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc14 C OG1 THR 391 C THR 376 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc15 C O ILE 392 C ILE 377 1_555 Q NA NA . C NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
#
_chem_comp.formula           'C10 H13 F N2 O5' 
_chem_comp.formula_weight    260.219 
_chem_comp.id                U7I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-deoxy-2'-fluoro-2'-methyluridine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PSI-6206 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O14 C13 U7I doub 491 n n 
N12 C13 U7I sing 492 n n 
N12 C10 U7I sing 493 n n 
C13 N07 U7I sing 494 n n 
C01 C02 U7I sing 495 n n 
O11 C10 U7I doub 496 n n 
C10 C09 U7I sing 497 n n 
F18 C02 U7I sing 498 n n 
C02 C06 U7I sing 499 n n 
C02 C03 U7I sing 500 n n 
N07 C06 U7I sing 501 n n 
N07 C08 U7I sing 502 n n 
C06 O05 U7I sing 503 n n 
C09 C08 U7I doub 504 n n 
C03 O17 U7I sing 505 n n 
C03 C04 U7I sing 506 n n 
O05 C04 U7I sing 507 n n 
C04 C15 U7I sing 508 n n 
C15 O16 U7I sing 509 n n 
C01 H011 U7I sing 510 n n 
C01 H012 U7I sing 511 n n 
C01 H013 U7I sing 512 n n 
C03 H031 U7I sing 513 n n 
C04 H041 U7I sing 514 n n 
C06 H061 U7I sing 515 n n 
C08 H081 U7I sing 516 n n 
C09 H091 U7I sing 517 n n 
C15 H152 U7I sing 518 n n 
C15 H151 U7I sing 519 n n 
N12 H121 U7I sing 520 n n 
O16 H161 U7I sing 521 n n 
O17 H171 U7I sing 522 n n 
#
_atom_sites.entry_id                     8TZ6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 U7I A 1 801 701 U7I PSI . 
E 3 NA A 1 802 801 NA NA . 
F 4 LBN A 1 803 1001 LBN LBN . 
G 4 LBN A 1 804 1002 LBN LBN . 
H 4 LBN A 1 805 1003 LBN LBN . 
I 4 LBN A 1 806 1004 LBN LBN . 
J 2 U7I B 1 801 701 U7I PSI . 
K 3 NA B 1 802 801 NA NA . 
L 4 LBN B 1 803 1001 LBN LBN . 
M 4 LBN B 1 804 1002 LBN LBN . 
N 4 LBN B 1 805 1003 LBN LBN . 
O 4 LBN B 1 806 1004 LBN LBN . 
P 2 U7I C 1 801 701 U7I PSI . 
Q 3 NA C 1 802 801 NA NA . 
R 4 LBN C 1 803 1001 LBN LBN . 
S 4 LBN C 1 804 1002 LBN LBN . 
T 4 LBN C 1 805 1003 LBN LBN . 
U 4 LBN C 1 806 1004 LBN LBN . 
V 5 HOH A 1 901 901 HOH HOH . 
W 5 HOH B 1 901 901 HOH HOH . 
X 5 HOH C 1 901 901 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 U7I . . . D 2 156.513 137.755 135.926 1 41.76 ? C01 U7I 801 A 1 
HETATM 2 C C02 U7I . . . D 2 155.678 137.066 137.004 1 41.76 ? C02 U7I 801 A 1 
HETATM 3 C C03 U7I . . . D 2 156.291 137.058 138.069 1 41.76 ? C03 U7I 801 A 1 
HETATM 4 C C04 U7I . . . D 2 155.105 136.831 139.201 1 41.76 ? C04 U7I 801 A 1 
HETATM 5 C C06 U7I . . . D 2 154.329 137.815 137.345 1 41.76 ? C06 U7I 801 A 1 
HETATM 6 C C08 U7I . . . D 2 154.724 140.078 138.048 1 41.76 ? C08 U7I 801 A 1 
HETATM 7 C C09 U7I . . . D 2 154.774 141.534 137.724 1 41.76 ? C09 U7I 801 A 1 
HETATM 8 C C10 U7I . . . D 2 154.449 141.995 136.344 1 41.76 ? C10 U7I 801 A 1 
HETATM 9 C C13 U7I . . . D 2 154.037 139.582 135.657 1 41.76 ? C13 U7I 801 A 1 
HETATM 10 C C15 U7I . . . D 2 155.677 137.148 140.567 1 41.76 ? C15 U7I 801 A 1 
HETATM 11 F F18 U7I . . . D 2 155.393 135.672 136.594 1 41.76 ? F18 U7I 801 A 1 
HETATM 12 N N07 U7I . . . D 2 154.367 139.113 137.03 1 41.76 ? N07 U7I 801 A 1 
HETATM 13 N N12 U7I . . . D 2 154.088 141.032 135.327 1 41.76 ? N12 U7I 801 A 1 
HETATM 14 O O05 U7I . . . D 2 154.185 137.639 138.862 1 41.76 ? O05 U7I 801 A 1 
HETATM 15 O O11 U7I . . . D 2 154.485 143.15 136.078 1 41.76 ? O11 U7I 801 A 1 
HETATM 16 O O14 U7I . . . D 2 153.745 138.802 134.817 1 41.76 ? O14 U7I 801 A 1 
HETATM 17 O O16 U7I . . . D 2 155.838 138.536 140.683 1 41.76 ? O16 U7I 801 A 1 
HETATM 18 O O17 U7I . . . D 2 157.265 135.949 138.107 1 41.76 ? O17 U7I 801 A 1 
HETATM 19 H H011 U7I . . . D 2 155.992 137.697 134.979 1 41.76 ? H011 U7I 801 A 1 
HETATM 20 H H012 U7I . . . D 2 157.469 137.255 135.846 1 41.76 ? H012 U7I 801 A 1 
HETATM 21 H H013 U7I . . . D 2 156.672 138.792 136.189 1 41.76 ? H013 U7I 801 A 1 
HETATM 22 H H031 U7I . . . D 2 156.78 138.007 138.24 1 41.76 ? H031 U7I 801 A 1 
HETATM 23 H H041 U7I . . . D 2 154.743 135.81 139.162 1 41.76 ? H041 U7I 801 A 1 
HETATM 24 H H061 U7I . . . D 2 153.503 137.337 136.835 1 41.76 ? H061 U7I 801 A 1 
HETATM 25 H H081 U7I . . . D 2 154.96 139.747 139.048 1 41.76 ? H081 U7I 801 A 1 
HETATM 26 H H091 U7I . . . D 2 155.045 142.248 138.492 1 41.76 ? H091 U7I 801 A 1 
HETATM 27 H H152 U7I . . . D 2 156.641 136.668 140.672 1 41.76 ? H152 U7I 801 A 1 
HETATM 28 H H151 U7I . . . D 2 155.013 136.794 141.342 1 41.76 ? H151 U7I 801 A 1 
HETATM 29 H H121 U7I . . . D 2 153.871 141.347 134.401 1 41.76 ? H121 U7I 801 A 1 
HETATM 30 H H161 U7I . . . D 2 155.052 138.905 141.045 1 41.76 ? H161 U7I 801 A 1 
HETATM 31 H H171 U7I . . . D 2 157.001 135.282 137.497 1 41.76 ? H171 U7I 801 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    77 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          50 
_model_server_stats.element_count           31 
#