data_8TZ9 # _model_server_result.job_id CofWD9bISCLcLm_g04M9tg _model_server_result.datetime_utc '2024-11-30 06:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 8TZ9 # _exptl.entry_id 8TZ9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 329.306 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-hydroxy-5'-O-(2-methylpropanoyl)cytidine" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TZ9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C13 H19 N3 O7' _chem_comp.formula_weight 329.306 _chem_comp.id XMO _chem_comp.mon_nstd_flag . _chem_comp.name "N-hydroxy-5'-O-(2-methylpropanoyl)cytidine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Molnupiravir # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C18 XMO doub 374 n n N17 C18 XMO sing 375 n n N17 C16 XMO doub 376 n n C18 N13 XMO sing 377 n n N20 C16 XMO sing 378 n n N20 O21 XMO sing 379 n n O22 C10 XMO sing 380 n n C16 C15 XMO sing 381 n n N13 C11 XMO sing 382 n n N13 C14 XMO sing 383 n n C11 C10 XMO sing 384 n n C11 O12 XMO sing 385 n n C10 C09 XMO sing 386 n n C15 C14 XMO doub 387 n n O12 C08 XMO sing 388 n n C09 O23 XMO sing 389 n n C09 C08 XMO sing 390 n n C08 C07 XMO sing 391 n n C07 O06 XMO sing 392 n n O06 C04 XMO sing 393 n n C04 C02 XMO sing 394 n n C04 O05 XMO doub 395 n n C02 C03 XMO sing 396 n n C02 C01 XMO sing 397 n n C10 H101 XMO sing 398 n n C11 H111 XMO sing 399 n n C01 H012 XMO sing 400 n n C01 H013 XMO sing 401 n n C01 H011 XMO sing 402 n n C02 H021 XMO sing 403 n n C03 H033 XMO sing 404 n n C03 H031 XMO sing 405 n n C03 H032 XMO sing 406 n n C07 H072 XMO sing 407 n n C07 H071 XMO sing 408 n n C08 H081 XMO sing 409 n n C09 H091 XMO sing 410 n n C14 H141 XMO sing 411 n n C15 H151 XMO sing 412 n n N20 H201 XMO sing 413 n n O21 H211 XMO sing 414 n n O22 H221 XMO sing 415 n n O23 H231 XMO sing 416 n n # _atom_sites.entry_id 8TZ9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 XMO B 1 801 701 XMO MPV . E 2 XMO A 1 801 701 XMO MPV . F 2 XMO C 1 801 701 XMO MPV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XMO . . . E 2 136.993 156.511 139.595 1 69.41 ? C10 XMO 801 A 1 HETATM 2 C C11 XMO . . . E 2 137.359 155.292 139.791 1 69.41 ? C11 XMO 801 A 1 HETATM 3 C C01 XMO . . . E 2 139.523 153.438 132.941 1 69.41 ? C01 XMO 801 A 1 HETATM 4 C C02 XMO . . . E 2 139.051 154.346 134.079 1 69.41 ? C02 XMO 801 A 1 HETATM 5 C C03 XMO . . . E 2 139.79 154.053 135.34 1 69.41 ? C03 XMO 801 A 1 HETATM 6 C C04 XMO . . . E 2 137.522 154.227 134.271 1 69.41 ? C04 XMO 801 A 1 HETATM 7 C C07 XMO . . . E 2 136.546 155.358 136.24 1 69.41 ? C07 XMO 801 A 1 HETATM 8 C C08 XMO . . . E 2 136.165 155.089 137.696 1 69.41 ? C08 XMO 801 A 1 HETATM 9 C C09 XMO . . . E 2 135.888 156.428 138.446 1 69.41 ? C09 XMO 801 A 1 HETATM 10 C C14 XMO . . . E 2 139.81 155.398 139.23 1 69.41 ? C14 XMO 801 A 1 HETATM 11 C C15 XMO . . . E 2 141.232 155.32 139.663 1 69.41 ? C15 XMO 801 A 1 HETATM 12 C C16 XMO . . . E 2 141.568 155.058 141.103 1 69.41 ? C16 XMO 801 A 1 HETATM 13 C C18 XMO . . . E 2 139.085 154.969 141.631 1 69.41 ? C18 XMO 801 A 1 HETATM 14 N N13 XMO . . . E 2 138.744 155.225 140.209 1 69.41 ? N13 XMO 801 A 1 HETATM 15 N N17 XMO . . . E 2 140.517 154.885 142.076 1 69.41 ? N17 XMO 801 A 1 HETATM 16 N N20 XMO . . . E 2 142.944 154.98 141.51 1 69.41 ? N20 XMO 801 A 1 HETATM 17 O O05 XMO . . . E 2 136.832 154.226 133.342 1 69.41 ? O05 XMO 801 A 1 HETATM 18 O O06 XMO . . . E 2 136.945 154.102 135.629 1 69.41 ? O06 XMO 801 A 1 HETATM 19 O O12 XMO . . . E 2 137.183 154.521 138.312 1 69.41 ? O12 XMO 801 A 1 HETATM 20 O O19 XMO . . . E 2 138.215 154.834 142.392 1 69.41 ? O19 XMO 801 A 1 HETATM 21 O O21 XMO . . . E 2 143.989 155.156 140.545 1 69.41 ? O21 XMO 801 A 1 HETATM 22 O O22 XMO . . . E 2 136.4 157.057 140.81 1 69.41 ? O22 XMO 801 A 1 HETATM 23 O O23 XMO . . . E 2 134.686 156.403 138.987 1 69.41 ? O23 XMO 801 A 1 HETATM 24 H H101 XMO . . . E 2 137.839 157.143 139.277 1 69.41 ? H101 XMO 801 A 1 HETATM 25 H H111 XMO . . . E 2 136.668 154.807 140.583 1 69.41 ? H111 XMO 801 A 1 HETATM 26 H H012 XMO . . . E 2 139.043 153.73 132.049 1 69.41 ? H012 XMO 801 A 1 HETATM 27 H H013 XMO . . . E 2 139.275 152.349 133.17 1 69.41 ? H013 XMO 801 A 1 HETATM 28 H H011 XMO . . . E 2 140.568 153.569 132.817 1 69.41 ? H011 XMO 801 A 1 HETATM 29 H H021 XMO . . . E 2 139.255 155.388 133.82 1 69.41 ? H021 XMO 801 A 1 HETATM 30 H H033 XMO . . . E 2 139.659 153.005 135.59 1 69.41 ? H033 XMO 801 A 1 HETATM 31 H H031 XMO . . . E 2 140.835 154.241 135.164 1 69.41 ? H031 XMO 801 A 1 HETATM 32 H H032 XMO . . . E 2 139.424 154.727 136.177 1 69.41 ? H032 XMO 801 A 1 HETATM 33 H H072 XMO . . . E 2 137.331 156.061 136.227 1 69.41 ? H072 XMO 801 A 1 HETATM 34 H H071 XMO . . . E 2 135.694 155.789 135.724 1 69.41 ? H071 XMO 801 A 1 HETATM 35 H H081 XMO . . . E 2 135.295 154.474 137.772 1 69.41 ? H081 XMO 801 A 1 HETATM 36 H H091 XMO . . . E 2 135.968 157.297 137.761 1 69.41 ? H091 XMO 801 A 1 HETATM 37 H H141 XMO . . . E 2 139.573 155.584 138.211 1 69.41 ? H141 XMO 801 A 1 HETATM 38 H H151 XMO . . . E 2 142.023 155.444 138.921 1 69.41 ? H151 XMO 801 A 1 HETATM 39 H H201 XMO . . . E 2 143.189 154.795 142.481 1 69.41 ? H201 XMO 801 A 1 HETATM 40 H H211 XMO . . . E 2 144.733 155.444 140.98 1 69.41 ? H211 XMO 801 A 1 HETATM 41 H H221 XMO . . . E 2 135.944 157.825 140.635 1 69.41 ? H221 XMO 801 A 1 HETATM 42 H H231 XMO . . . E 2 134.176 157.194 138.742 1 69.41 ? H231 XMO 801 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #