data_8TZR # _model_server_result.job_id MpqphwMmxCtKcLmCktuY5g _model_server_result.datetime_utc '2024-11-22 09:00:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 8TZR # _exptl.entry_id 8TZR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TZR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 4 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 4 7 6 GLC MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n D BMA 3 D 3 BMA D 3 BMA 4 n D MAN 4 D 4 MAN D 4 MAN 4 n D MAN 5 D 5 MAN D 5 MAN 4 n D MAN 6 D 6 MAN D 6 MAN 4 n D GLC 7 D 7 GLC D 7 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 42 1_555 A SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 77 A CYS 77 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 128 A CYS 128 1_555 A SG CYS 136 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 138 A CYS 138 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 203 A CYS 203 1_555 A SG CYS 217 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 205 A CYS 205 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 281 A CYS 281 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 297 A CYS 297 1_555 A SG CYS 307 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 311 A CYS 311 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 A SG CYS 329 A CYS 329 1_555 A SG CYS 339 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 A SG CYS 334 A CYS 334 1_555 A SG CYS 335 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 B SG CYS 50 B CYS 50 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf14 B SG CYS 162 B CYS 162 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 C SG CYS 105 C CYS 105 1_555 C SG CYS 137 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A OG SER 209 A SER 209 1_555 E C1 PAM . A PAM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale2 A ND2 ASN 298 A ASN 298 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 D O2 MAN . D MAN 4 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D O2 MAN . D MAN 5 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 D O3 MAN . D MAN 6 1_555 D C1 GLC . D GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 407 n n N C13 POV sing 408 n n N C14 POV sing 409 n n N C15 POV sing 410 n n P O11 POV sing 411 n n P O12 POV sing 412 n n P O13 POV sing 413 n n P O14 POV doub 414 n n C1 C2 POV sing 415 n n C1 O11 POV sing 416 n n C1 H1 POV sing 417 n n C1 H1A POV sing 418 n n C2 C3 POV sing 419 n n C2 O21 POV sing 420 n n C2 H2 POV sing 421 n n C3 O31 POV sing 422 n n C3 H3 POV sing 423 n n C3 H3A POV sing 424 n n C210 C211 POV sing 425 n n C210 C29 POV doub 426 z n C210 H210 POV sing 427 n n C310 C311 POV sing 428 n n C310 C39 POV sing 429 n n C310 H310 POV sing 430 n n C310 H31A POV sing 431 n n C11 C12 POV sing 432 n n C11 O12 POV sing 433 n n C11 H11 POV sing 434 n n C11 H11A POV sing 435 n n C211 C212 POV sing 436 n n C211 H211 POV sing 437 n n C211 H21A POV sing 438 n n C311 C312 POV sing 439 n n C311 H311 POV sing 440 n n C311 H31B POV sing 441 n n C12 H12 POV sing 442 n n C12 H12A POV sing 443 n n C212 C213 POV sing 444 n n C212 H212 POV sing 445 n n C212 H21B POV sing 446 n n C312 C313 POV sing 447 n n C312 H312 POV sing 448 n n C312 H31C POV sing 449 n n C13 H13 POV sing 450 n n C13 H13A POV sing 451 n n C13 H13B POV sing 452 n n C213 C214 POV sing 453 n n C213 H213 POV sing 454 n n C213 H21C POV sing 455 n n C313 C314 POV sing 456 n n C313 H313 POV sing 457 n n C313 H31D POV sing 458 n n C14 H14 POV sing 459 n n C14 H14A POV sing 460 n n C14 H14B POV sing 461 n n C214 C215 POV sing 462 n n C214 H214 POV sing 463 n n C214 H21D POV sing 464 n n C314 C315 POV sing 465 n n C314 H314 POV sing 466 n n C314 H31E POV sing 467 n n C15 H15 POV sing 468 n n C15 H15A POV sing 469 n n C15 H15B POV sing 470 n n C215 C216 POV sing 471 n n C215 H215 POV sing 472 n n C215 H21E POV sing 473 n n C315 C316 POV sing 474 n n C315 H315 POV sing 475 n n C315 H31F POV sing 476 n n C216 C217 POV sing 477 n n C216 H216 POV sing 478 n n C216 H21F POV sing 479 n n C316 H316 POV sing 480 n n C316 H31G POV sing 481 n n C316 H31H POV sing 482 n n C217 C218 POV sing 483 n n C217 H217 POV sing 484 n n C217 H21G POV sing 485 n n C218 H218 POV sing 486 n n C218 H21H POV sing 487 n n C218 H21J POV sing 488 n n C21 O21 POV sing 489 n n C21 C22 POV sing 490 n n C21 O22 POV doub 491 n n C22 C23 POV sing 492 n n C22 H22 POV sing 493 n n C22 H22A POV sing 494 n n C23 C24 POV sing 495 n n C23 H23 POV sing 496 n n C23 H23A POV sing 497 n n C24 C25 POV sing 498 n n C24 H24 POV sing 499 n n C24 H24A POV sing 500 n n C25 C26 POV sing 501 n n C25 H25 POV sing 502 n n C25 H25A POV sing 503 n n C26 C27 POV sing 504 n n C26 H26 POV sing 505 n n C26 H26A POV sing 506 n n C27 C28 POV sing 507 n n C27 H27 POV sing 508 n n C27 H27A POV sing 509 n n C28 C29 POV sing 510 n n C28 H28 POV sing 511 n n C28 H28A POV sing 512 n n C29 H29 POV sing 513 n n C31 O31 POV sing 514 n n C31 C32 POV sing 515 n n C31 O32 POV doub 516 n n C32 C33 POV sing 517 n n C32 H32 POV sing 518 n n C32 H32A POV sing 519 n n C33 C34 POV sing 520 n n C33 H33 POV sing 521 n n C33 H33A POV sing 522 n n C34 C35 POV sing 523 n n C34 H34 POV sing 524 n n C34 H34A POV sing 525 n n C35 C36 POV sing 526 n n C35 H35 POV sing 527 n n C35 H35A POV sing 528 n n C36 C37 POV sing 529 n n C36 H36 POV sing 530 n n C36 H36A POV sing 531 n n C37 C38 POV sing 532 n n C37 H37 POV sing 533 n n C37 H37A POV sing 534 n n C38 C39 POV sing 535 n n C38 H38 POV sing 536 n n C38 H38A POV sing 537 n n C39 H39 POV sing 538 n n C39 H39A POV sing 539 n n # _atom_sites.entry_id 8TZR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PAM A 1 601 601 PAM PAM . F 6 POV B 1 601 501 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . F 6 121.788 113.285 108.982 1 92.34 ? N POV 601 B 1 HETATM 2 P P POV . . . F 6 123.226 114.457 104.298 1 92.34 ? P POV 601 B 1 HETATM 3 C C1 POV . . . F 6 121.225 113.947 102.66 1 92.34 ? C1 POV 601 B 1 HETATM 4 C C2 POV . . . F 6 119.794 113.401 102.666 1 92.34 ? C2 POV 601 B 1 HETATM 5 C C3 POV . . . F 6 119.102 113.784 101.364 1 92.34 ? C3 POV 601 B 1 HETATM 6 C C210 POV . . . F 6 108.79 116.62 105.85 1 92.34 ? C210 POV 601 B 1 HETATM 7 C C310 POV . . . F 6 106.576 117.47 101.773 1 92.34 ? C310 POV 601 B 1 HETATM 8 C C11 POV . . . F 6 122.54 114.143 106.812 1 92.34 ? C11 POV 601 B 1 HETATM 9 O O11 POV . . . F 6 121.613 114.216 103.988 1 92.34 ? O11 POV 601 B 1 HETATM 10 C C211 POV . . . F 6 107.746 116.998 106.942 1 92.34 ? C211 POV 601 B 1 HETATM 11 C C12 POV . . . F 6 122.558 112.943 107.796 1 92.34 ? C12 POV 601 B 1 HETATM 12 O O12 POV . . . F 6 123.554 113.974 105.849 1 92.34 ? O12 POV 601 B 1 HETATM 13 C C212 POV . . . F 6 106.784 118.076 106.377 1 92.34 ? C212 POV 601 B 1 HETATM 14 C C13 POV . . . F 6 121.81 112.177 109.901 1 92.34 ? C13 POV 601 B 1 HETATM 15 O O13 POV . . . F 6 124.059 113.663 103.32 1 92.34 ? O13 POV 601 B 1 HETATM 16 C C14 POV . . . F 6 120.435 113.583 108.616 1 92.34 ? C14 POV 601 B 1 HETATM 17 O O14 POV . . . F 6 123.549 115.924 104.16 1 92.34 ? O14 POV 601 B 1 HETATM 18 C C15 POV . . . F 6 122.384 114.462 109.627 1 92.34 ? C15 POV 601 B 1 HETATM 19 C C21 POV . . . F 6 118.403 113.029 104.555 1 92.34 ? C21 POV 601 B 1 HETATM 20 O O21 POV . . . F 6 119.094 113.966 103.743 1 92.34 ? O21 POV 601 B 1 HETATM 21 C C22 POV . . . F 6 117.412 113.525 105.635 1 92.34 ? C22 POV 601 B 1 HETATM 22 O O22 POV . . . F 6 118.578 111.862 104.41 1 92.34 ? O22 POV 601 B 1 HETATM 23 C C23 POV . . . F 6 116.261 112.514 105.754 1 92.34 ? C23 POV 601 B 1 HETATM 24 C C24 POV . . . F 6 115.01 113.084 105.044 1 92.34 ? C24 POV 601 B 1 HETATM 25 C C25 POV . . . F 6 113.859 113.193 106.058 1 92.34 ? C25 POV 601 B 1 HETATM 26 C C26 POV . . . F 6 112.569 113.661 105.318 1 92.34 ? C26 POV 601 B 1 HETATM 27 C C27 POV . . . F 6 112.222 115.095 105.76 1 92.34 ? C27 POV 601 B 1 HETATM 28 C C28 POV . . . F 6 110.905 115.532 105.083 1 92.34 ? C28 POV 601 B 1 HETATM 29 C C29 POV . . . F 6 109.875 115.905 106.174 1 92.34 ? C29 POV 601 B 1 HETATM 30 C C31 POV . . . F 6 116.9 114.093 100.579 1 92.34 ? C31 POV 601 B 1 HETATM 31 O O31 POV . . . F 6 117.798 114.227 101.664 1 92.34 ? O31 POV 601 B 1 HETATM 32 C C32 POV . . . F 6 115.464 113.613 100.83 1 92.34 ? C32 POV 601 B 1 HETATM 33 O O32 POV . . . F 6 117.261 114.347 99.486 1 92.34 ? O32 POV 601 B 1 HETATM 34 C C33 POV . . . F 6 114.474 114.569 100.149 1 92.34 ? C33 POV 601 B 1 HETATM 35 C C34 POV . . . F 6 113.203 114.641 101 1 92.34 ? C34 POV 601 B 1 HETATM 36 C C35 POV . . . F 6 112.071 115.299 100.185 1 92.34 ? C35 POV 601 B 1 HETATM 37 C C36 POV . . . F 6 111.038 115.896 101.157 1 92.34 ? C36 POV 601 B 1 HETATM 38 C C37 POV . . . F 6 109.721 116.209 100.376 1 92.34 ? C37 POV 601 B 1 HETATM 39 C C38 POV . . . F 6 108.506 115.894 101.287 1 92.34 ? C38 POV 601 B 1 HETATM 40 C C39 POV . . . F 6 107.238 116.577 100.691 1 92.34 ? C39 POV 601 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #