data_8TZU # _model_server_result.job_id mtK-alvTzfRpDpxX4fUp3A _model_server_result.datetime_utc '2024-10-26 02:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":702}' # _entry.id 8TZU # _exptl.entry_id 8TZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TZU _cell.length_a 98.914 _cell.length_b 150.61 _cell.length_c 155.111 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G,K,L,N,O,R,V 1 1 B,C,D,I,J,P,Q,S,T,U 2 1 F,H,M,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 5 4 1 FUC NAG C1 O1 . O6 HO6 . sing 5 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 6 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n I NAG 1 L 1 NAG B 618 NAG 4 n I NAG 2 L 2 NAG B 619 NAG 4 n J NAG 1 N 1 NAG B 620 NAG 4 n J NAG 2 N 2 NAG B 621 NAG 5 n K NAG 1 I 1 NAG A 621 NAG 5 n K NAG 2 I 2 NAG A 622 NAG 5 n K BMA 3 I 3 BMA A 624 BMA 5 n K FUC 4 I 4 FUC A 623 FUC 6 n L NAG 1 J 1 NAG A 625 NAG 6 n L NAG 2 J 2 NAG A 626 NAG 6 n L FUC 3 J 3 FUC A 627 FUC 4 n M NAG 1 K 1 NAG F 616 NAG 4 n M NAG 2 K 2 NAG F 617 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 343 1_555 A SG CYS 29 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 47 A CYS 386 1_555 A SG CYS 100 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 152 A CYS 491 1_555 A SG CYS 221 A CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 160 A CYS 499 1_555 A SG CYS 182 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 162 A CYS 501 1_555 A SG CYS 236 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 168 A CYS 507 1_555 A SG CYS 191 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 195 A CYS 534 1_555 A SG CYS 208 A CYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 231 A CYS 570 1_555 A SG CYS 238 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 251 A CYS 590 1_555 A SG CYS 257 A CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 4 B CYS 343 1_555 B SG CYS 29 B CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 B SG CYS 47 B CYS 386 1_555 B SG CYS 100 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 59 B CYS 398 1_555 B SG CYS 274 B CYS 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 B SG CYS 152 B CYS 491 1_555 B SG CYS 221 B CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 B SG CYS 160 B CYS 499 1_555 B SG CYS 182 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 B SG CYS 162 B CYS 501 1_555 B SG CYS 236 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 B SG CYS 168 B CYS 507 1_555 B SG CYS 191 B CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 B SG CYS 195 B CYS 534 1_555 B SG CYS 208 B CYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 B SG CYS 231 B CYS 570 1_555 B SG CYS 238 B CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 251 B CYS 590 1_555 B SG CYS 257 B CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf22 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf23 F SG CYS 4 F CYS 343 1_555 F SG CYS 29 F CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 F SG CYS 47 F CYS 386 1_555 F SG CYS 100 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 F SG CYS 59 F CYS 398 1_555 F SG CYS 274 F CYS 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf26 F SG CYS 152 F CYS 491 1_555 F SG CYS 221 F CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf27 F SG CYS 160 F CYS 499 1_555 F SG CYS 182 F CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf28 F SG CYS 162 F CYS 501 1_555 F SG CYS 236 F CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf29 F SG CYS 168 F CYS 507 1_555 F SG CYS 191 F CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 F SG CYS 195 F CYS 534 1_555 F SG CYS 208 F CYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf31 F SG CYS 231 F CYS 570 1_555 F SG CYS 238 F CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf32 F SG CYS 251 F CYS 590 1_555 F SG CYS 257 F CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf33 G SG CYS 22 G CYS 22 1_555 G SG CYS 96 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf34 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 110 A ASN 449 1_555 L C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 165 A ASN 504 1_555 K C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 B ND2 ASN 110 B ASN 449 1_555 I C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 B ND2 ASN 165 B ASN 504 1_555 J C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 F ND2 ASN 110 F ASN 449 1_555 M C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 I O4 NAG . L NAG 1 1_555 I C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 J O4 NAG . N NAG 1 1_555 J C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 K O4 NAG . I NAG 1 1_555 K C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 K O6 NAG . I NAG 1 1_555 K C1 FUC . I FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 K O4 NAG . I NAG 2 1_555 K C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 L O4 NAG . J NAG 1 1_555 L C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 L O6 NAG . J NAG 1 1_555 L C1 FUC . J FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale13 M O4 NAG . K NAG 1 1_555 M C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 8TZU _atom_sites.fract_transf_matrix[1][1] 0.01011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 7 GOL A 1 701 1 GOL GOL . O 7 GOL A 1 702 2 GOL GOL . P 7 GOL C 1 201 201 GOL GOL . Q 7 GOL C 1 202 202 GOL GOL . R 8 HOH A 1 801 100 HOH HOH . R 8 HOH A 2 802 68 HOH HOH . R 8 HOH A 3 803 66 HOH HOH . R 8 HOH A 4 804 44 HOH HOH . R 8 HOH A 5 805 74 HOH HOH . R 8 HOH A 6 806 62 HOH HOH . R 8 HOH A 7 807 63 HOH HOH . R 8 HOH A 8 808 67 HOH HOH . R 8 HOH A 9 809 65 HOH HOH . R 8 HOH A 10 810 33 HOH HOH . R 8 HOH A 11 811 80 HOH HOH . R 8 HOH A 12 812 98 HOH HOH . R 8 HOH A 13 813 75 HOH HOH . R 8 HOH A 14 814 76 HOH HOH . R 8 HOH A 15 815 87 HOH HOH . R 8 HOH A 16 816 32 HOH HOH . R 8 HOH A 17 817 102 HOH HOH . S 8 HOH B 1 701 103 HOH HOH . S 8 HOH B 2 702 47 HOH HOH . S 8 HOH B 3 703 39 HOH HOH . S 8 HOH B 4 704 72 HOH HOH . S 8 HOH B 5 705 96 HOH HOH . S 8 HOH B 6 706 8 HOH HOH . S 8 HOH B 7 707 54 HOH HOH . S 8 HOH B 8 708 58 HOH HOH . S 8 HOH B 9 709 91 HOH HOH . S 8 HOH B 10 710 15 HOH HOH . S 8 HOH B 11 711 55 HOH HOH . S 8 HOH B 12 712 104 HOH HOH . S 8 HOH B 13 713 9 HOH HOH . S 8 HOH B 14 714 14 HOH HOH . S 8 HOH B 15 715 59 HOH HOH . S 8 HOH B 16 716 5 HOH HOH . S 8 HOH B 17 717 57 HOH HOH . S 8 HOH B 18 718 40 HOH HOH . T 8 HOH C 1 301 51 HOH HOH . T 8 HOH C 2 302 71 HOH HOH . T 8 HOH C 3 303 43 HOH HOH . T 8 HOH C 4 304 46 HOH HOH . T 8 HOH C 5 305 78 HOH HOH . U 8 HOH D 1 201 36 HOH HOH . U 8 HOH D 2 202 23 HOH HOH . U 8 HOH D 3 203 38 HOH HOH . U 8 HOH D 4 204 25 HOH HOH . U 8 HOH D 5 205 82 HOH HOH . U 8 HOH D 6 206 101 HOH HOH . U 8 HOH D 7 207 105 HOH HOH . V 8 HOH E 1 201 1 HOH HOH . V 8 HOH E 2 202 84 HOH HOH . V 8 HOH E 3 203 4 HOH HOH . V 8 HOH E 4 204 3 HOH HOH . V 8 HOH E 5 205 83 HOH HOH . W 8 HOH F 1 701 89 HOH HOH . W 8 HOH F 2 702 94 HOH HOH . W 8 HOH F 3 703 11 HOH HOH . W 8 HOH F 4 704 27 HOH HOH . W 8 HOH F 5 705 97 HOH HOH . W 8 HOH F 6 706 21 HOH HOH . W 8 HOH F 7 707 17 HOH HOH . W 8 HOH F 8 708 28 HOH HOH . W 8 HOH F 9 709 93 HOH HOH . W 8 HOH F 10 710 88 HOH HOH . X 8 HOH H 1 201 41 HOH HOH . X 8 HOH H 2 202 30 HOH HOH . X 8 HOH H 3 203 31 HOH HOH . X 8 HOH H 4 204 42 HOH HOH . X 8 HOH H 5 205 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 7 -6.748 15.59 -7.824 1 110.23 ? C1 GOL 702 A 1 HETATM 2 O O1 GOL . . . O 7 -6.522 14.601 -6.847 1 93.14 ? O1 GOL 702 A 1 HETATM 3 C C2 GOL . . . O 7 -8.241 15.484 -8.289 1 116.59 ? C2 GOL 702 A 1 HETATM 4 O O2 GOL . . . O 7 -8.543 14.225 -8.856 1 73.25 ? O2 GOL 702 A 1 HETATM 5 C C3 GOL . . . O 7 -8.435 16.703 -9.261 1 119.04 ? C3 GOL 702 A 1 HETATM 6 O O3 GOL . . . O 7 -8.116 17.876 -8.535 1 99.21 ? O3 GOL 702 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #