data_8TZX
#
_model_server_result.job_id            P7kysxv8rgqRDDuB6ru_Rg 
_model_server_result.datetime_utc      '2025-01-10 08:21:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tzx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":502}' 
#
_entry.id    8TZX 
#
_exptl.entry_id    8TZX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              399.483 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-3-(5-{(1R)-1-[(2R)-1-ethylpiperidin-2-yl]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)piperidine-2,6-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.92 
_cell.angle_gamma         90 
_cell.entry_id            8TZX 
_cell.length_a            76.669 
_cell.length_b            137.742 
_cell.length_c            136.628 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TZX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,R,S 1 1 
D,E,F,M,N,O,P,Q,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 18 B CYS 18 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 E SG CYS 18 E CYS 18 1_555 E SG CYS 313 E CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A SG CYS 254 A CYS 323 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc2 A SG CYS 257 A CYS 326 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc3 A SG CYS 322 A CYS 391 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc4 A SG CYS 325 A CYS 394 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc5 C SG CYS 7 C CYS 872 1_555 L ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc6 C SG CYS 10 C CYS 875 1_555 L ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc7 C NE2 HIS 23 C HIS 888 1_555 L ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc8 C NE2 HIS 27 C HIS 892 1_555 L ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc9 D SG CYS 254 D CYS 323 1_555 M ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc10 D SG CYS 257 D CYS 326 1_555 M ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc11 D SG CYS 322 D CYS 391 1_555 M ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc12 D SG CYS 325 D CYS 394 1_555 M ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc13 F SG CYS 7 F CYS 872 1_555 Q ZN ZN . F ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc14 F SG CYS 10 F CYS 875 1_555 Q ZN ZN . F ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc15 F NE2 HIS 23 F HIS 888 1_555 Q ZN ZN . F ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc16 F NE2 HIS 27 F HIS 892 1_555 Q ZN ZN . F ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C22 H29 N3 O4' 
_chem_comp.formula_weight    399.483 
_chem_comp.id                U3I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-3-(5-{(1R)-1-[(2R)-1-ethylpiperidin-2-yl]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)piperidine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O18 C17 U3I doub 371 n n 
O10 C9 U3I doub 372 n n 
C17 N16 U3I sing 373 n n 
C17 C12 U3I sing 374 n n 
C9 N8 U3I sing 375 n n 
C9 C5 U3I sing 376 n n 
N16 C15 U3I sing 377 n n 
C12 N8 U3I sing 378 n n 
C12 C13 U3I sing 379 n n 
C6 C5 U3I doub 380 n y 
C6 C1 U3I sing 381 n y 
N8 C7 U3I sing 382 n n 
C5 C4 U3I sing 383 n y 
C15 O19 U3I doub 384 n n 
C15 C14 U3I sing 385 n n 
C1 C2 U3I doub 386 n y 
C14 C13 U3I sing 387 n n 
C4 C7 U3I sing 388 n n 
C4 C3 U3I doub 389 n y 
C29 C28 U3I sing 390 n n 
C24 C25 U3I sing 391 n n 
C24 N23 U3I sing 392 n n 
C2 C3 U3I sing 393 n y 
C2 O11 U3I sing 394 n n 
C25 C26 U3I sing 395 n n 
O11 C20 U3I sing 396 n n 
N23 C28 U3I sing 397 n n 
N23 C21 U3I sing 398 n n 
C26 C27 U3I sing 399 n n 
C20 C21 U3I sing 400 n n 
C20 C22 U3I sing 401 n n 
C21 C27 U3I sing 402 n n 
C1 H1 U3I sing 403 n n 
C3 H2 U3I sing 404 n n 
C12 H3 U3I sing 405 n n 
C13 H4 U3I sing 406 n n 
C13 H5 U3I sing 407 n n 
C14 H6 U3I sing 408 n n 
C14 H7 U3I sing 409 n n 
C20 H8 U3I sing 410 n n 
C21 H9 U3I sing 411 n n 
C22 H10 U3I sing 412 n n 
C22 H11 U3I sing 413 n n 
C22 H12 U3I sing 414 n n 
C24 H13 U3I sing 415 n n 
C24 H14 U3I sing 416 n n 
C25 H15 U3I sing 417 n n 
C25 H16 U3I sing 418 n n 
C26 H17 U3I sing 419 n n 
C26 H18 U3I sing 420 n n 
C27 H19 U3I sing 421 n n 
C27 H20 U3I sing 422 n n 
C28 H21 U3I sing 423 n n 
C28 H22 U3I sing 424 n n 
C29 H23 U3I sing 425 n n 
C29 H24 U3I sing 426 n n 
C29 H25 U3I sing 427 n n 
C6 H26 U3I sing 428 n n 
C7 H27 U3I sing 429 n n 
C7 H28 U3I sing 430 n n 
N16 H29 U3I sing 431 n n 
#
_atom_sites.entry_id                     8TZX 
_atom_sites.fract_transf_matrix[1][1]    0.013043 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001583 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00726 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ZN A 1 501 501 ZN ZN . 
H 5 U3I A 1 502 502 U3I LI1 . 
I 6 SO4 A 1 503 4 SO4 SO4 . 
J 7 EDO B 1 1201 1201 EDO EDO . 
K 6 SO4 B 1 1202 2 SO4 SO4 . 
L 4 ZN C 1 901 931 ZN ZN . 
M 4 ZN D 1 501 501 ZN ZN . 
N 5 U3I D 1 502 502 U3I LI1 . 
O 6 SO4 D 1 503 1 SO4 SO4 . 
P 6 SO4 E 1 1201 3 SO4 SO4 . 
Q 4 ZN F 1 901 931 ZN ZN . 
R 8 HOH A 1 601 19 HOH HOH . 
S 8 HOH B 1 1301 7 HOH HOH . 
S 8 HOH B 2 1302 1 HOH HOH . 
S 8 HOH B 3 1303 10 HOH HOH . 
S 8 HOH B 4 1304 17 HOH HOH . 
T 8 HOH D 1 601 14 HOH HOH . 
U 8 HOH E 1 1301 15 HOH HOH . 
U 8 HOH E 2 1302 18 HOH HOH . 
U 8 HOH E 3 1303 11 HOH HOH . 
U 8 HOH E 4 1304 16 HOH HOH . 
U 8 HOH E 5 1305 20 HOH HOH . 
V 8 HOH F 1 1001 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 U3I . . . N 5 -62.576 -11.298 -93.826 1 124.05 ? C1 U3I 502 D 1 
HETATM 2 C C2 U3I . . . N 5 -63.269 -12.378 -93.252 1 123.18 ? C2 U3I 502 D 1 
HETATM 3 C C3 U3I . . . N 5 -63.445 -12.433 -91.867 1 129.71 ? C3 U3I 502 D 1 
HETATM 4 C C12 U3I . . . N 5 -62.109 -9.334 -88.065 1 120.66 ? C12 U3I 502 D 1 
HETATM 5 C C13 U3I . . . N 5 -63.482 -8.916 -87.484 1 114.48 ? C13 U3I 502 D 1 
HETATM 6 C C14 U3I . . . N 5 -63.384 -8.546 -85.989 1 116.51 ? C14 U3I 502 D 1 
HETATM 7 C C15 U3I . . . N 5 -62.647 -9.61 -85.216 1 119.25 ? C15 U3I 502 D 1 
HETATM 8 C C17 U3I . . . N 5 -61.436 -10.342 -87.165 1 121.67 ? C17 U3I 502 D 1 
HETATM 9 C C20 U3I . . . N 5 -64.933 -13.479 -94.845 1 130.22 ? C20 U3I 502 D 1 
HETATM 10 C C21 U3I . . . N 5 -64.897 -14.907 -95.48 1 138.12 ? C21 U3I 502 D 1 
HETATM 11 C C22 U3I . . . N 5 -66.223 -13.228 -94.017 1 125.85 ? C22 U3I 502 D 1 
HETATM 12 C C24 U3I . . . N 5 -62.466 -15.511 -96.007 1 129.62 ? C24 U3I 502 D 1 
HETATM 13 C C25 U3I . . . N 5 -62.799 -15.477 -97.518 1 135.19 ? C25 U3I 502 D 1 
HETATM 14 C C26 U3I . . . N 5 -63.877 -14.406 -97.777 1 131.1 ? C26 U3I 502 D 1 
HETATM 15 C C27 U3I . . . N 5 -65.147 -14.848 -97.018 1 132.56 ? C27 U3I 502 D 1 
HETATM 16 C C28 U3I . . . N 5 -63.86 -17.035 -94.543 1 138.9 ? C28 U3I 502 D 1 
HETATM 17 C C29 U3I . . . N 5 -63.99 -17.115 -92.997 1 127.84 ? C29 U3I 502 D 1 
HETATM 18 C C4 U3I . . . N 5 -62.949 -11.402 -91.074 1 126.04 ? C4 U3I 502 D 1 
HETATM 19 C C5 U3I . . . N 5 -62.277 -10.337 -91.652 1 125.38 ? C5 U3I 502 D 1 
HETATM 20 C C6 U3I . . . N 5 -62.077 -10.259 -93.028 1 121.86 ? C6 U3I 502 D 1 
HETATM 21 C C7 U3I . . . N 5 -63.031 -11.243 -89.554 1 122.86 ? C7 U3I 502 D 1 
HETATM 22 C C9 U3I . . . N 5 -61.888 -9.428 -90.519 1 121.31 ? C9 U3I 502 D 1 
HETATM 23 N N16 U3I . . . N 5 -61.754 -10.401 -85.852 1 118.71 ? N16 U3I 502 D 1 
HETATM 24 N N23 U3I . . . N 5 -63.657 -15.675 -95.124 1 138.36 ? N23 U3I 502 D 1 
HETATM 25 N N8 U3I . . . N 5 -62.328 -9.966 -89.362 1 121.95 ? N8 U3I 502 D 1 
HETATM 26 O O10 U3I . . . N 5 -61.276 -8.383 -90.678 1 105.61 ? O10 U3I 502 D 1 
HETATM 27 O O11 U3I . . . N 5 -63.773 -13.451 -93.997 1 115.45 ? O11 U3I 502 D 1 
HETATM 28 O O18 U3I . . . N 5 -60.613 -11.098 -87.659 1 135.19 ? O18 U3I 502 D 1 
HETATM 29 O O19 U3I . . . N 5 -62.877 -9.723 -84.022 1 123.54 ? O19 U3I 502 D 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           29 
#