data_8U08
#
_model_server_result.job_id            OMzdQkylRP20HA3usx4CLA 
_model_server_result.datetime_utc      '2024-12-28 02:24:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u08 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    8U08 
#
_exptl.entry_id    8U08 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U08 
_cell.length_a            69.749 
_cell.length_b            73.905 
_cell.length_c            129.882 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U08 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 98 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf2 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 98 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.965 ? 
disulf ? disulf3 A SG CYS 158 H CYS 158 1_555 A SG CYS 214 H CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 B SG CYS 20 L CYS 21 1_555 B SG CYS 85 L CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf5 B SG CYS 135 L CYS 136 1_555 B SG CYS 194 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8U08 
_atom_sites.fract_transf_matrix[1][1]    0.014337 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013531 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL L 1 301 4 GOL GOL . 
E 4 GOL C 1 201 1 GOL GOL . 
F 4 GOL C 1 202 2 GOL GOL . 
G 4 GOL C 1 203 3 GOL GOL . 
H 5 HOH H 1 301 139 HOH HOH . 
H 5 HOH H 2 302 189 HOH HOH . 
H 5 HOH H 3 303 52 HOH HOH . 
H 5 HOH H 4 304 43 HOH HOH . 
H 5 HOH H 5 305 161 HOH HOH . 
H 5 HOH H 6 306 35 HOH HOH . 
H 5 HOH H 7 307 73 HOH HOH . 
H 5 HOH H 8 308 49 HOH HOH . 
H 5 HOH H 9 309 171 HOH HOH . 
H 5 HOH H 10 310 115 HOH HOH . 
H 5 HOH H 11 311 15 HOH HOH . 
H 5 HOH H 12 312 134 HOH HOH . 
H 5 HOH H 13 313 110 HOH HOH . 
H 5 HOH H 14 314 53 HOH HOH . 
H 5 HOH H 15 315 79 HOH HOH . 
H 5 HOH H 16 316 44 HOH HOH . 
H 5 HOH H 17 317 51 HOH HOH . 
H 5 HOH H 18 318 188 HOH HOH . 
H 5 HOH H 19 319 86 HOH HOH . 
H 5 HOH H 20 320 3 HOH HOH . 
H 5 HOH H 21 321 28 HOH HOH . 
H 5 HOH H 22 322 69 HOH HOH . 
H 5 HOH H 23 323 111 HOH HOH . 
H 5 HOH H 24 324 151 HOH HOH . 
H 5 HOH H 25 325 62 HOH HOH . 
H 5 HOH H 26 326 34 HOH HOH . 
H 5 HOH H 27 327 98 HOH HOH . 
H 5 HOH H 28 328 131 HOH HOH . 
H 5 HOH H 29 329 63 HOH HOH . 
H 5 HOH H 30 330 120 HOH HOH . 
H 5 HOH H 31 331 165 HOH HOH . 
H 5 HOH H 32 332 76 HOH HOH . 
H 5 HOH H 33 333 11 HOH HOH . 
H 5 HOH H 34 334 180 HOH HOH . 
H 5 HOH H 35 335 70 HOH HOH . 
H 5 HOH H 36 336 107 HOH HOH . 
H 5 HOH H 37 337 179 HOH HOH . 
H 5 HOH H 38 338 66 HOH HOH . 
H 5 HOH H 39 339 186 HOH HOH . 
H 5 HOH H 40 340 6 HOH HOH . 
H 5 HOH H 41 341 162 HOH HOH . 
H 5 HOH H 42 342 158 HOH HOH . 
H 5 HOH H 43 343 81 HOH HOH . 
H 5 HOH H 44 344 141 HOH HOH . 
H 5 HOH H 45 345 105 HOH HOH . 
H 5 HOH H 46 346 160 HOH HOH . 
H 5 HOH H 47 347 7 HOH HOH . 
H 5 HOH H 48 348 78 HOH HOH . 
H 5 HOH H 49 349 118 HOH HOH . 
H 5 HOH H 50 350 31 HOH HOH . 
H 5 HOH H 51 351 183 HOH HOH . 
H 5 HOH H 52 352 128 HOH HOH . 
H 5 HOH H 53 353 54 HOH HOH . 
H 5 HOH H 54 354 169 HOH HOH . 
H 5 HOH H 55 355 176 HOH HOH . 
H 5 HOH H 56 356 37 HOH HOH . 
H 5 HOH H 57 357 27 HOH HOH . 
H 5 HOH H 58 358 48 HOH HOH . 
H 5 HOH H 59 359 14 HOH HOH . 
H 5 HOH H 60 360 33 HOH HOH . 
H 5 HOH H 61 361 99 HOH HOH . 
H 5 HOH H 62 362 127 HOH HOH . 
H 5 HOH H 63 363 122 HOH HOH . 
H 5 HOH H 64 364 137 HOH HOH . 
H 5 HOH H 65 365 2 HOH HOH . 
H 5 HOH H 66 366 59 HOH HOH . 
H 5 HOH H 67 367 36 HOH HOH . 
H 5 HOH H 68 368 153 HOH HOH . 
H 5 HOH H 69 369 19 HOH HOH . 
H 5 HOH H 70 370 84 HOH HOH . 
H 5 HOH H 71 371 90 HOH HOH . 
H 5 HOH H 72 372 154 HOH HOH . 
H 5 HOH H 73 373 184 HOH HOH . 
H 5 HOH H 74 374 138 HOH HOH . 
H 5 HOH H 75 375 148 HOH HOH . 
H 5 HOH H 76 376 94 HOH HOH . 
H 5 HOH H 77 377 191 HOH HOH . 
H 5 HOH H 78 378 130 HOH HOH . 
H 5 HOH H 79 379 175 HOH HOH . 
H 5 HOH H 80 380 205 HOH HOH . 
H 5 HOH H 81 381 77 HOH HOH . 
H 5 HOH H 82 382 140 HOH HOH . 
H 5 HOH H 83 383 177 HOH HOH . 
H 5 HOH H 84 384 149 HOH HOH . 
H 5 HOH H 85 385 178 HOH HOH . 
H 5 HOH H 86 386 145 HOH HOH . 
H 5 HOH H 87 387 182 HOH HOH . 
H 5 HOH H 88 388 194 HOH HOH . 
H 5 HOH H 89 389 135 HOH HOH . 
H 5 HOH H 90 390 121 HOH HOH . 
H 5 HOH H 91 391 106 HOH HOH . 
H 5 HOH H 92 392 125 HOH HOH . 
H 5 HOH H 93 393 150 HOH HOH . 
H 5 HOH H 94 394 93 HOH HOH . 
H 5 HOH H 95 395 163 HOH HOH . 
H 5 HOH H 96 396 190 HOH HOH . 
H 5 HOH H 97 397 108 HOH HOH . 
I 5 HOH L 1 401 85 HOH HOH . 
I 5 HOH L 2 402 123 HOH HOH . 
I 5 HOH L 3 403 72 HOH HOH . 
I 5 HOH L 4 404 58 HOH HOH . 
I 5 HOH L 5 405 29 HOH HOH . 
I 5 HOH L 6 406 119 HOH HOH . 
I 5 HOH L 7 407 8 HOH HOH . 
I 5 HOH L 8 408 13 HOH HOH . 
I 5 HOH L 9 409 16 HOH HOH . 
I 5 HOH L 10 410 157 HOH HOH . 
I 5 HOH L 11 411 17 HOH HOH . 
I 5 HOH L 12 412 60 HOH HOH . 
I 5 HOH L 13 413 91 HOH HOH . 
I 5 HOH L 14 414 146 HOH HOH . 
I 5 HOH L 15 415 96 HOH HOH . 
I 5 HOH L 16 416 124 HOH HOH . 
I 5 HOH L 17 417 67 HOH HOH . 
I 5 HOH L 18 418 57 HOH HOH . 
I 5 HOH L 19 419 83 HOH HOH . 
I 5 HOH L 20 420 68 HOH HOH . 
I 5 HOH L 21 421 152 HOH HOH . 
I 5 HOH L 22 422 95 HOH HOH . 
I 5 HOH L 23 423 155 HOH HOH . 
I 5 HOH L 24 424 129 HOH HOH . 
I 5 HOH L 25 425 24 HOH HOH . 
I 5 HOH L 26 426 88 HOH HOH . 
I 5 HOH L 27 427 12 HOH HOH . 
I 5 HOH L 28 428 74 HOH HOH . 
I 5 HOH L 29 429 80 HOH HOH . 
I 5 HOH L 30 430 21 HOH HOH . 
I 5 HOH L 31 431 32 HOH HOH . 
I 5 HOH L 32 432 5 HOH HOH . 
I 5 HOH L 33 433 206 HOH HOH . 
I 5 HOH L 34 434 133 HOH HOH . 
I 5 HOH L 35 435 197 HOH HOH . 
I 5 HOH L 36 436 61 HOH HOH . 
I 5 HOH L 37 437 41 HOH HOH . 
I 5 HOH L 38 438 103 HOH HOH . 
I 5 HOH L 39 439 10 HOH HOH . 
I 5 HOH L 40 440 47 HOH HOH . 
I 5 HOH L 41 441 101 HOH HOH . 
I 5 HOH L 42 442 56 HOH HOH . 
I 5 HOH L 43 443 109 HOH HOH . 
I 5 HOH L 44 444 201 HOH HOH . 
I 5 HOH L 45 445 75 HOH HOH . 
I 5 HOH L 46 446 30 HOH HOH . 
I 5 HOH L 47 447 192 HOH HOH . 
I 5 HOH L 48 448 147 HOH HOH . 
I 5 HOH L 49 449 23 HOH HOH . 
I 5 HOH L 50 450 199 HOH HOH . 
I 5 HOH L 51 451 40 HOH HOH . 
I 5 HOH L 52 452 164 HOH HOH . 
I 5 HOH L 53 453 143 HOH HOH . 
I 5 HOH L 54 454 202 HOH HOH . 
I 5 HOH L 55 455 136 HOH HOH . 
I 5 HOH L 56 456 200 HOH HOH . 
I 5 HOH L 57 457 174 HOH HOH . 
I 5 HOH L 58 458 71 HOH HOH . 
I 5 HOH L 59 459 195 HOH HOH . 
I 5 HOH L 60 460 187 HOH HOH . 
I 5 HOH L 61 461 203 HOH HOH . 
I 5 HOH L 62 462 167 HOH HOH . 
I 5 HOH L 63 463 181 HOH HOH . 
I 5 HOH L 64 464 198 HOH HOH . 
J 5 HOH C 1 301 112 HOH HOH . 
J 5 HOH C 2 302 38 HOH HOH . 
J 5 HOH C 3 303 132 HOH HOH . 
J 5 HOH C 4 304 113 HOH HOH . 
J 5 HOH C 5 305 1 HOH HOH . 
J 5 HOH C 6 306 20 HOH HOH . 
J 5 HOH C 7 307 126 HOH HOH . 
J 5 HOH C 8 308 172 HOH HOH . 
J 5 HOH C 9 309 22 HOH HOH . 
J 5 HOH C 10 310 104 HOH HOH . 
J 5 HOH C 11 311 170 HOH HOH . 
J 5 HOH C 12 312 97 HOH HOH . 
J 5 HOH C 13 313 65 HOH HOH . 
J 5 HOH C 14 314 166 HOH HOH . 
J 5 HOH C 15 315 50 HOH HOH . 
J 5 HOH C 16 316 116 HOH HOH . 
J 5 HOH C 17 317 102 HOH HOH . 
J 5 HOH C 18 318 87 HOH HOH . 
J 5 HOH C 19 319 100 HOH HOH . 
J 5 HOH C 20 320 89 HOH HOH . 
J 5 HOH C 21 321 114 HOH HOH . 
J 5 HOH C 22 322 117 HOH HOH . 
J 5 HOH C 23 323 18 HOH HOH . 
J 5 HOH C 24 324 82 HOH HOH . 
J 5 HOH C 25 325 209 HOH HOH . 
J 5 HOH C 26 326 168 HOH HOH . 
J 5 HOH C 27 327 173 HOH HOH . 
J 5 HOH C 28 328 208 HOH HOH . 
J 5 HOH C 29 329 45 HOH HOH . 
J 5 HOH C 30 330 144 HOH HOH . 
J 5 HOH C 31 331 46 HOH HOH . 
J 5 HOH C 32 332 185 HOH HOH . 
J 5 HOH C 33 333 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 -5.356 -17.934 56.423 1 54.4 ? C1 GOL 202 C 1 
HETATM 2 O O1 GOL . . . F 4 -6.787 -17.943 56.265 1 57.28 ? O1 GOL 202 C 1 
HETATM 3 C C2 GOL . . . F 4 -4.875 -16.466 56.207 1 62.45 ? C2 GOL 202 C 1 
HETATM 4 O O2 GOL . . . F 4 -5.727 -15.547 56.8 1 59.41 ? O2 GOL 202 C 1 
HETATM 5 C C3 GOL . . . F 4 -3.477 -16.394 56.831 1 48.62 ? C3 GOL 202 C 1 
HETATM 6 O O3 GOL . . . F 4 -3.288 -15.056 57.225 1 57.48 ? O3 GOL 202 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#