data_8U0K # _model_server_result.job_id RTAYsNm6B0UldsswQ57k3g _model_server_result.datetime_utc '2024-11-26 22:15:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8U0K # _exptl.entry_id 8U0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U0K _cell.length_a 96.623 _cell.length_b 101.561 _cell.length_c 64.816 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 21 n n PB O2B ADP sing 22 n n PB O3B ADP sing 23 n n PB O3A ADP sing 24 n n O2B HOB2 ADP sing 25 n n O3B HOB3 ADP sing 26 n n PA O1A ADP doub 27 n n PA O2A ADP sing 28 n n PA O3A ADP sing 29 n n PA O5' ADP sing 30 n n O2A HOA2 ADP sing 31 n n O5' C5' ADP sing 32 n n C5' C4' ADP sing 33 n n C5' "H5'1" ADP sing 34 n n C5' "H5'2" ADP sing 35 n n C4' O4' ADP sing 36 n n C4' C3' ADP sing 37 n n C4' H4' ADP sing 38 n n O4' C1' ADP sing 39 n n C3' O3' ADP sing 40 n n C3' C2' ADP sing 41 n n C3' H3' ADP sing 42 n n O3' HO3' ADP sing 43 n n C2' O2' ADP sing 44 n n C2' C1' ADP sing 45 n n C2' H2' ADP sing 46 n n O2' HO2' ADP sing 47 n n C1' N9 ADP sing 48 n n C1' H1' ADP sing 49 n n N9 C8 ADP sing 50 n y N9 C4 ADP sing 51 n y C8 N7 ADP doub 52 n y C8 H8 ADP sing 53 n n N7 C5 ADP sing 54 n y C5 C6 ADP sing 55 n y C5 C4 ADP doub 56 n y C6 N6 ADP sing 57 n n C6 N1 ADP doub 58 n y N6 HN61 ADP sing 59 n n N6 HN62 ADP sing 60 n n N1 C2 ADP sing 61 n y C2 N3 ADP doub 62 n y C2 H2 ADP sing 63 n n N3 C4 ADP sing 64 n y # _atom_sites.entry_id 8U0K _atom_sites.fract_transf_matrix[1][1] 0.01035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 281 ADP ADP . D 3 4LR A 1 302 381 4LR PJ3 . E 2 ADP B 1 301 281 ADP ADP . F 3 4LR B 1 302 381 4LR PJ3 . G 4 HOH A 1 401 15 HOH HOH . G 4 HOH A 2 402 28 HOH HOH . G 4 HOH A 3 403 2 HOH HOH . G 4 HOH A 4 404 9 HOH HOH . G 4 HOH A 5 405 11 HOH HOH . G 4 HOH A 6 406 17 HOH HOH . G 4 HOH A 7 407 16 HOH HOH . G 4 HOH A 8 408 12 HOH HOH . G 4 HOH A 9 409 29 HOH HOH . G 4 HOH A 10 410 24 HOH HOH . G 4 HOH A 11 411 35 HOH HOH . G 4 HOH A 12 412 10 HOH HOH . G 4 HOH A 13 413 3 HOH HOH . H 4 HOH B 1 401 34 HOH HOH . H 4 HOH B 2 402 30 HOH HOH . H 4 HOH B 3 403 39 HOH HOH . H 4 HOH B 4 404 26 HOH HOH . H 4 HOH B 5 405 19 HOH HOH . H 4 HOH B 6 406 7 HOH HOH . H 4 HOH B 7 407 20 HOH HOH . H 4 HOH B 8 408 13 HOH HOH . H 4 HOH B 9 409 4 HOH HOH . H 4 HOH B 10 410 8 HOH HOH . H 4 HOH B 11 411 38 HOH HOH . H 4 HOH B 12 412 23 HOH HOH . H 4 HOH B 13 413 25 HOH HOH . H 4 HOH B 14 414 14 HOH HOH . H 4 HOH B 15 415 22 HOH HOH . H 4 HOH B 16 416 31 HOH HOH . H 4 HOH B 17 417 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 13.501 16.107 11.723 1 111.32 ? PB ADP 301 A 1 HETATM 2 O O1B ADP . . . C 2 12.819 17.354 12.238 1 103.36 ? O1B ADP 301 A 1 HETATM 3 O O2B ADP . . . C 2 12.676 14.85 11.881 1 95.41 ? O2B ADP 301 A 1 HETATM 4 O O3B ADP . . . C 2 14.147 16.257 10.365 1 93.78 ? O3B ADP 301 A 1 HETATM 5 P PA ADP . . . C 2 14.548 15.296 14.204 1 91.99 ? PA ADP 301 A 1 HETATM 6 O O1A ADP . . . C 2 13.365 16 14.827 1 99.12 ? O1A ADP 301 A 1 HETATM 7 O O2A ADP . . . C 2 14.57 13.787 14.129 1 86.66 ? O2A ADP 301 A 1 HETATM 8 O O3A ADP . . . C 2 14.753 15.899 12.722 1 101.8 ? O3A ADP 301 A 1 HETATM 9 O O5' ADP . . . C 2 15.872 15.757 14.993 1 84.93 ? O5' ADP 301 A 1 HETATM 10 C C5' ADP . . . C 2 16.203 15.114 16.222 1 82.52 ? C5' ADP 301 A 1 HETATM 11 C C4' ADP . . . C 2 16.673 16.142 17.245 1 80.44 ? C4' ADP 301 A 1 HETATM 12 O O4' ADP . . . C 2 16.47 15.642 18.57 1 76.52 ? O4' ADP 301 A 1 HETATM 13 C C3' ADP . . . C 2 18.154 16.477 17.117 1 79.51 ? C3' ADP 301 A 1 HETATM 14 O O3' ADP . . . C 2 18.342 17.734 16.452 1 76.93 ? O3' ADP 301 A 1 HETATM 15 C C2' ADP . . . C 2 18.67 16.541 18.546 1 75.58 ? C2' ADP 301 A 1 HETATM 16 O O2' ADP . . . C 2 18.991 17.893 18.892 1 70.46 ? O2' ADP 301 A 1 HETATM 17 C C1' ADP . . . C 2 17.531 16.059 19.437 1 70.5 ? C1' ADP 301 A 1 HETATM 18 N N9 ADP . . . C 2 17.908 14.932 20.34 1 68.77 ? N9 ADP 301 A 1 HETATM 19 C C8 ADP . . . C 2 17.344 14.728 21.545 1 63.05 ? C8 ADP 301 A 1 HETATM 20 N N7 ADP . . . C 2 17.864 13.639 22.165 1 63.39 ? N7 ADP 301 A 1 HETATM 21 C C5 ADP . . . C 2 18.793 13.115 21.35 1 61.94 ? C5 ADP 301 A 1 HETATM 22 C C6 ADP . . . C 2 19.717 11.956 21.408 1 61.21 ? C6 ADP 301 A 1 HETATM 23 N N6 ADP . . . C 2 19.74 11.131 22.485 1 53.45 ? N6 ADP 301 A 1 HETATM 24 N N1 ADP . . . C 2 20.534 11.751 20.349 1 60.45 ? N1 ADP 301 A 1 HETATM 25 C C2 ADP . . . C 2 20.515 12.568 19.278 1 59.04 ? C2 ADP 301 A 1 HETATM 26 N N3 ADP . . . C 2 19.702 13.635 19.162 1 57.98 ? N3 ADP 301 A 1 HETATM 27 C C4 ADP . . . C 2 18.829 13.97 20.147 1 66.33 ? C4 ADP 301 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #