data_8U0K
#
_model_server_result.job_id            gcKxkIcfXo0WplMYh21vcA 
_model_server_result.datetime_utc      '2025-02-17 05:21:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u0k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    8U0K 
#
_exptl.entry_id    8U0K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U0K 
_cell.length_a            96.623 
_cell.length_b            101.561 
_cell.length_c            64.816 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U0K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 21 n n 
PB O2B ADP sing 22 n n 
PB O3B ADP sing 23 n n 
PB O3A ADP sing 24 n n 
O2B HOB2 ADP sing 25 n n 
O3B HOB3 ADP sing 26 n n 
PA O1A ADP doub 27 n n 
PA O2A ADP sing 28 n n 
PA O3A ADP sing 29 n n 
PA O5' ADP sing 30 n n 
O2A HOA2 ADP sing 31 n n 
O5' C5' ADP sing 32 n n 
C5' C4' ADP sing 33 n n 
C5' "H5'1" ADP sing 34 n n 
C5' "H5'2" ADP sing 35 n n 
C4' O4' ADP sing 36 n n 
C4' C3' ADP sing 37 n n 
C4' H4' ADP sing 38 n n 
O4' C1' ADP sing 39 n n 
C3' O3' ADP sing 40 n n 
C3' C2' ADP sing 41 n n 
C3' H3' ADP sing 42 n n 
O3' HO3' ADP sing 43 n n 
C2' O2' ADP sing 44 n n 
C2' C1' ADP sing 45 n n 
C2' H2' ADP sing 46 n n 
O2' HO2' ADP sing 47 n n 
C1' N9 ADP sing 48 n n 
C1' H1' ADP sing 49 n n 
N9 C8 ADP sing 50 n y 
N9 C4 ADP sing 51 n y 
C8 N7 ADP doub 52 n y 
C8 H8 ADP sing 53 n n 
N7 C5 ADP sing 54 n y 
C5 C6 ADP sing 55 n y 
C5 C4 ADP doub 56 n y 
C6 N6 ADP sing 57 n n 
C6 N1 ADP doub 58 n y 
N6 HN61 ADP sing 59 n n 
N6 HN62 ADP sing 60 n n 
N1 C2 ADP sing 61 n y 
C2 N3 ADP doub 62 n y 
C2 H2 ADP sing 63 n n 
N3 C4 ADP sing 64 n y 
#
_atom_sites.entry_id                     8U0K 
_atom_sites.fract_transf_matrix[1][1]    0.01035 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009846 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015428 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 281 ADP ADP . 
D 3 4LR A 1 302 381 4LR PJ3 . 
E 2 ADP B 1 301 281 ADP ADP . 
F 3 4LR B 1 302 381 4LR PJ3 . 
G 4 HOH A 1 401 15 HOH HOH . 
G 4 HOH A 2 402 28 HOH HOH . 
G 4 HOH A 3 403 2 HOH HOH . 
G 4 HOH A 4 404 9 HOH HOH . 
G 4 HOH A 5 405 11 HOH HOH . 
G 4 HOH A 6 406 17 HOH HOH . 
G 4 HOH A 7 407 16 HOH HOH . 
G 4 HOH A 8 408 12 HOH HOH . 
G 4 HOH A 9 409 29 HOH HOH . 
G 4 HOH A 10 410 24 HOH HOH . 
G 4 HOH A 11 411 35 HOH HOH . 
G 4 HOH A 12 412 10 HOH HOH . 
G 4 HOH A 13 413 3 HOH HOH . 
H 4 HOH B 1 401 34 HOH HOH . 
H 4 HOH B 2 402 30 HOH HOH . 
H 4 HOH B 3 403 39 HOH HOH . 
H 4 HOH B 4 404 26 HOH HOH . 
H 4 HOH B 5 405 19 HOH HOH . 
H 4 HOH B 6 406 7 HOH HOH . 
H 4 HOH B 7 407 20 HOH HOH . 
H 4 HOH B 8 408 13 HOH HOH . 
H 4 HOH B 9 409 4 HOH HOH . 
H 4 HOH B 10 410 8 HOH HOH . 
H 4 HOH B 11 411 38 HOH HOH . 
H 4 HOH B 12 412 23 HOH HOH . 
H 4 HOH B 13 413 25 HOH HOH . 
H 4 HOH B 14 414 14 HOH HOH . 
H 4 HOH B 15 415 22 HOH HOH . 
H 4 HOH B 16 416 31 HOH HOH . 
H 4 HOH B 17 417 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 2 -1.495 21.868 -28.321 1 126.26 ? PB ADP 301 B 1 
HETATM 2 O O1B ADP . . . E 2 -0.875 23.208 -27.994 1 110.12 ? O1B ADP 301 B 1 
HETATM 3 O O2B ADP . . . E 2 -0.495 20.755 -28.545 1 115.44 ? O2B ADP 301 B 1 
HETATM 4 O O3B ADP . . . E 2 -2.651 21.481 -27.426 1 99.14 ? O3B ADP 301 B 1 
HETATM 5 P PA ADP . . . E 2 -1.298 21.909 -31.133 1 121.12 ? PA ADP 301 B 1 
HETATM 6 O O1A ADP . . . E 2 0.12 22.352 -30.862 1 121.71 ? O1A ADP 301 B 1 
HETATM 7 O O2A ADP . . . E 2 -1.553 20.511 -31.65 1 104.92 ? O2A ADP 301 B 1 
HETATM 8 O O3A ADP . . . E 2 -2.154 22.107 -29.777 1 116.64 ? O3A ADP 301 B 1 
HETATM 9 O O5' ADP . . . E 2 -1.956 22.971 -32.154 1 116.09 ? O5' ADP 301 B 1 
HETATM 10 C C5' ADP . . . E 2 -1.477 23.077 -33.496 1 109.62 ? C5' ADP 301 B 1 
HETATM 11 C C4' ADP . . . E 2 -2.152 24.242 -34.214 1 111.39 ? C4' ADP 301 B 1 
HETATM 12 O O4' ADP . . . E 2 -2.477 23.909 -35.572 1 109.42 ? O4' ADP 301 B 1 
HETATM 13 C C3' ADP . . . E 2 -3.457 24.635 -33.543 1 107.14 ? C3' ADP 301 B 1 
HETATM 14 O O3' ADP . . . E 2 -3.265 25.794 -32.724 1 105.86 ? O3' ADP 301 B 1 
HETATM 15 C C2' ADP . . . E 2 -4.415 24.928 -34.682 1 102.83 ? C2' ADP 301 B 1 
HETATM 16 O O2' ADP . . . E 2 -4.715 26.326 -34.71 1 99.89 ? O2' ADP 301 B 1 
HETATM 17 C C1' ADP . . . E 2 -3.692 24.562 -35.972 1 101.62 ? C1' ADP 301 B 1 
HETATM 18 N N9 ADP . . . E 2 -4.491 23.707 -36.912 1 93.84 ? N9 ADP 301 B 1 
HETATM 19 C C8 ADP . . . E 2 -3.953 23.04 -37.955 1 90.65 ? C8 ADP 301 B 1 
HETATM 20 N N7 ADP . . . E 2 -4.889 22.36 -38.665 1 81.27 ? N7 ADP 301 B 1 
HETATM 21 C C5 ADP . . . E 2 -6.08 22.597 -38.086 1 88.47 ? C5 ADP 301 B 1 
HETATM 22 C C6 ADP . . . E 2 -7.487 22.183 -38.338 1 84.21 ? C6 ADP 301 B 1 
HETATM 23 N N6 ADP . . . E 2 -7.807 21.366 -39.37 1 75.85 ? N6 ADP 301 B 1 
HETATM 24 N N1 ADP . . . E 2 -8.446 22.646 -37.504 1 78.06 ? N1 ADP 301 B 1 
HETATM 25 C C2 ADP . . . E 2 -8.144 23.458 -36.476 1 77.93 ? C2 ADP 301 B 1 
HETATM 26 N N3 ADP . . . E 2 -6.894 23.87 -36.193 1 84.91 ? N3 ADP 301 B 1 
HETATM 27 C C4 ADP . . . E 2 -5.823 23.493 -36.941 1 90.71 ? C4 ADP 301 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#