data_8U0L # _model_server_result.job_id kbs-Qh5Y5KTxNJAZimwbTQ _model_server_result.datetime_utc '2025-02-18 18:55:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 8U0L # _exptl.entry_id 8U0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.086 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-but-2-en-1-yl dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U0L _cell.length_a 96.601 _cell.length_b 101.109 _cell.length_c 64.966 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C4 H9 O4 P' _chem_comp.formula_weight 152.086 _chem_comp.id U4R _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-but-2-en-1-yl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 U4R doub 361 n n P1 O2 U4R sing 362 n n P1 O3 U4R sing 363 n n P1 O4 U4R sing 364 n n O4 C5 U4R sing 365 n n C5 C6 U4R sing 366 n n C6 C7 U4R doub 367 e n C7 C8 U4R sing 368 n n C5 H51 U4R sing 369 n n C5 H5 U4R sing 370 n n C6 H6 U4R sing 371 n n C7 H71 U4R sing 372 n n C8 H8 U4R sing 373 n n C8 H82 U4R sing 374 n n C8 H81 U4R sing 375 n n O3 H1 U4R sing 376 n n O2 H2 U4R sing 377 n n # _atom_sites.entry_id 8U0L _atom_sites.fract_transf_matrix[1][1] 0.010352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 281 ADP ADP . D 3 U4R A 1 302 282 U4R BV6 . E 2 ADP B 1 301 281 ADP ADP . F 3 U4R B 1 302 381 U4R BV6 . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 3 HOH HOH . G 4 HOH A 3 403 4 HOH HOH . H 4 HOH B 1 401 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 U4R . . . F 3 4.974 18.435 8.539 1 82.71 ? C5 U4R 302 B 1 HETATM 2 C C6 U4R . . . F 3 6.079 18.245 9.58 1 69.79 ? C6 U4R 302 B 1 HETATM 3 C C7 U4R . . . F 3 6.957 19.148 9.978 1 75.16 ? C7 U4R 302 B 1 HETATM 4 C C8 U4R . . . F 3 8.049 18.969 11.001 1 77.27 ? C8 U4R 302 B 1 HETATM 5 O O1 U4R . . . F 3 1.089 18.88 8.602 1 89.62 ? O1 U4R 302 B 1 HETATM 6 O O2 U4R . . . F 3 2.631 18.739 6.549 1 99.06 ? O2 U4R 302 B 1 HETATM 7 O O3 U4R . . . F 3 2.136 20.448 7.017 1 102.97 ? O3 U4R 302 B 1 HETATM 8 O O4 U4R . . . F 3 3.806 19.127 8.896 1 86.11 ? O4 U4R 302 B 1 HETATM 9 P P1 U4R . . . F 3 2.391 19.102 8.024 1 99.46 ? P1 U4R 302 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #