data_8U0R # _model_server_result.job_id owXotEKak1MUjxoV_h0GiQ _model_server_result.datetime_utc '2025-01-11 16:02:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":207}' # _entry.id 8U0R # _exptl.entry_id 8U0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.29 _cell.angle_gamma 90 _cell.entry_id 8U0R _cell.length_a 46.86 _cell.length_b 70.06 _cell.length_c 78.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,J,K,L,M,N,O,P,Q,R,VB 1 1 B,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,WB 2 1 C,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XB 3 1 D,TA,UA,VA,WA,XA,YA,ZA,AB,BB,YB 4 1 E,CB,DB,EB,FB,GB,HB,IB,ZB 5 1 F,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,AC 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 O N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 OA N N ? 5 YA N N ? 5 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 45 1_555 A SG CYS 52 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 69 A CYS 92 1_555 A SG CYS 83 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 22 B CYS 45 1_555 B SG CYS 52 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 69 B CYS 92 1_555 B SG CYS 83 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 C SG CYS 22 C CYS 45 1_555 C SG CYS 52 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 69 C CYS 92 1_555 C SG CYS 83 C CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf7 D SG CYS 22 D CYS 45 1_555 D SG CYS 52 D CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 D SG CYS 69 D CYS 92 1_555 D SG CYS 83 D CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 E SG CYS 22 E CYS 45 1_555 E SG CYS 52 E CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf10 E SG CYS 69 E CYS 92 1_555 E SG CYS 83 E CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 69 F CYS 92 1_555 F SG CYS 83 F CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD2 ASP 65 A ASP 88 1_555 FA NA NA . B NA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 B O TYR 68 B TYR 91 1_555 FA NA NA . B NA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc3 C OD1 ASP 74 C ASP 97 1_555 QA NA NA . C NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8U0R _atom_sites.fract_transf_matrix[1][1] 0.02134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001976 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 EOH A 1 201 8 EOH EOH . H 3 EDO A 1 202 15 EDO EDO . I 3 EDO A 1 203 16 EDO EDO . J 4 MOH A 1 204 23 MOH MOH . K 4 MOH A 1 205 26 MOH MOH . L 4 MOH A 1 206 27 MOH MOH . M 5 IOD A 1 207 1 IOD IOD . N 5 IOD A 1 208 2 IOD IOD . O 5 IOD A 1 209 12 IOD IOD . P 6 CL A 1 210 14 CL CL . Q 6 CL A 1 211 16 CL CL . R 6 CL A 1 212 19 CL CL . S 2 EOH B 1 201 5 EOH EOH . T 3 EDO B 1 202 14 EDO EDO . U 7 PDO B 1 203 32 PDO PDO . V 7 PDO B 1 204 33 PDO PDO . W 8 PGR B 1 205 35 PGR PGO . X 5 IOD B 1 206 3 IOD IOD . Y 5 IOD B 1 207 4 IOD IOD . Z 5 IOD B 1 208 5 IOD IOD . AA 5 IOD B 1 209 6 IOD IOD . BA 5 IOD B 1 210 7 IOD IOD . CA 5 IOD B 1 211 8 IOD IOD . DA 6 CL B 1 212 15 CL CL . EA 6 CL B 1 213 20 CL CL . FA 9 NA B 1 214 22 NA NA . GA 10 PG0 B 1 215 2 PG0 PG0 . HA 11 DHL B 1 216 2 DHL DHL . IA 3 EDO C 1 201 10 EDO EDO . JA 3 EDO C 1 202 12 EDO EDO . KA 3 EDO C 1 203 17 EDO EDO . LA 4 MOH C 1 204 24 MOH MOH . MA 4 MOH C 1 205 29 MOH MOH . NA 7 PDO C 1 206 34 PDO PDO . OA 5 IOD C 1 207 11 IOD IOD . PA 6 CL C 1 208 21 CL CL . QA 9 NA C 1 209 23 NA NA . RA 12 PGE C 1 210 1 PGE PGE . SA 13 PEG C 1 211 3 PEG PEG . TA 2 EOH D 1 201 9 EOH EOH . UA 3 EDO D 1 202 13 EDO EDO . VA 3 EDO D 1 203 19 EDO EDO . WA 7 PDO D 1 204 30 PDO PDO . XA 14 POL D 1 205 36 POL POL . YA 5 IOD D 1 206 9 IOD IOD . ZA 5 IOD D 1 207 10 IOD IOD . AB 6 CL D 1 208 17 CL CL . BB 13 PEG D 1 209 6 PEG PEG . CB 15 GOL E 1 201 3 GOL GOL . DB 2 EOH E 1 202 4 EOH EOH . EB 3 EDO E 1 203 11 EDO EDO . FB 3 EDO E 1 204 20 EDO EDO . GB 4 MOH E 1 205 22 MOH MOH . HB 7 PDO E 1 206 31 PDO PDO . IB 16 IPA E 1 207 37 IPA IPA . JB 15 GOL F 1 201 1 GOL GOL . KB 15 GOL F 1 202 2 GOL GOL . LB 2 EOH F 1 203 6 EOH EOH . MB 3 EDO F 1 204 18 EDO EDO . NB 4 MOH F 1 205 21 MOH MOH . OB 4 MOH F 1 206 25 MOH MOH . PB 4 MOH F 1 207 28 MOH MOH . QB 6 CL F 1 208 13 CL CL . RB 6 CL F 1 209 18 CL CL . SB 12 PGE F 1 210 4 PGE PGE . TB 13 PEG F 1 211 5 PEG PEG . UB 11 DHL F 1 212 1 DHL DHL . VB 17 HOH A 1 301 31 HOH HOH . VB 17 HOH A 2 302 63 HOH HOH . VB 17 HOH A 3 303 7 HOH HOH . VB 17 HOH A 4 304 75 HOH HOH . VB 17 HOH A 5 305 29 HOH HOH . VB 17 HOH A 6 306 45 HOH HOH . VB 17 HOH A 7 307 32 HOH HOH . VB 17 HOH A 8 308 14 HOH HOH . VB 17 HOH A 9 309 83 HOH HOH . VB 17 HOH A 10 310 71 HOH HOH . WB 17 HOH B 1 301 54 HOH HOH . WB 17 HOH B 2 302 33 HOH HOH . WB 17 HOH B 3 303 17 HOH HOH . WB 17 HOH B 4 304 70 HOH HOH . WB 17 HOH B 5 305 2 HOH HOH . WB 17 HOH B 6 306 19 HOH HOH . WB 17 HOH B 7 307 50 HOH HOH . WB 17 HOH B 8 308 16 HOH HOH . WB 17 HOH B 9 309 34 HOH HOH . WB 17 HOH B 10 310 18 HOH HOH . WB 17 HOH B 11 311 56 HOH HOH . WB 17 HOH B 12 312 60 HOH HOH . WB 17 HOH B 13 313 62 HOH HOH . WB 17 HOH B 14 314 57 HOH HOH . WB 17 HOH B 15 315 3 HOH HOH . WB 17 HOH B 16 316 52 HOH HOH . XB 17 HOH C 1 301 22 HOH HOH . XB 17 HOH C 2 302 74 HOH HOH . XB 17 HOH C 3 303 69 HOH HOH . XB 17 HOH C 4 304 8 HOH HOH . XB 17 HOH C 5 305 4 HOH HOH . XB 17 HOH C 6 306 36 HOH HOH . XB 17 HOH C 7 307 35 HOH HOH . XB 17 HOH C 8 308 39 HOH HOH . XB 17 HOH C 9 309 37 HOH HOH . XB 17 HOH C 10 310 46 HOH HOH . XB 17 HOH C 11 311 20 HOH HOH . XB 17 HOH C 12 312 77 HOH HOH . XB 17 HOH C 13 313 38 HOH HOH . XB 17 HOH C 14 314 49 HOH HOH . XB 17 HOH C 15 315 76 HOH HOH . XB 17 HOH C 16 316 61 HOH HOH . XB 17 HOH C 17 317 43 HOH HOH . XB 17 HOH C 18 318 79 HOH HOH . XB 17 HOH C 19 319 12 HOH HOH . XB 17 HOH C 20 320 72 HOH HOH . YB 17 HOH D 1 301 85 HOH HOH . YB 17 HOH D 2 302 80 HOH HOH . YB 17 HOH D 3 303 40 HOH HOH . YB 17 HOH D 4 304 9 HOH HOH . YB 17 HOH D 5 305 30 HOH HOH . YB 17 HOH D 6 306 15 HOH HOH . YB 17 HOH D 7 307 26 HOH HOH . YB 17 HOH D 8 308 58 HOH HOH . YB 17 HOH D 9 309 59 HOH HOH . YB 17 HOH D 10 310 25 HOH HOH . YB 17 HOH D 11 311 84 HOH HOH . ZB 17 HOH E 1 301 44 HOH HOH . ZB 17 HOH E 2 302 65 HOH HOH . ZB 17 HOH E 3 303 68 HOH HOH . ZB 17 HOH E 4 304 67 HOH HOH . ZB 17 HOH E 5 305 41 HOH HOH . ZB 17 HOH E 6 306 55 HOH HOH . ZB 17 HOH E 7 307 78 HOH HOH . ZB 17 HOH E 8 308 1 HOH HOH . ZB 17 HOH E 9 309 10 HOH HOH . ZB 17 HOH E 10 310 66 HOH HOH . ZB 17 HOH E 11 311 82 HOH HOH . AC 17 HOH F 1 301 21 HOH HOH . AC 17 HOH F 2 302 23 HOH HOH . AC 17 HOH F 3 303 42 HOH HOH . AC 17 HOH F 4 304 81 HOH HOH . AC 17 HOH F 5 305 73 HOH HOH . AC 17 HOH F 6 306 27 HOH HOH . AC 17 HOH F 7 307 5 HOH HOH . AC 17 HOH F 8 308 64 HOH HOH . AC 17 HOH F 9 309 51 HOH HOH . AC 17 HOH F 10 310 11 HOH HOH . AC 17 HOH F 11 311 28 HOH HOH . AC 17 HOH F 12 312 13 HOH HOH . AC 17 HOH F 13 313 47 HOH HOH . AC 17 HOH F 14 314 53 HOH HOH . AC 17 HOH F 15 315 24 HOH HOH . AC 17 HOH F 16 316 6 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 5 _atom_site.Cartn_x 8.856 _atom_site.Cartn_y 5.639 _atom_site.Cartn_z 7.561 _atom_site.occupancy 0.55 _atom_site.B_iso_or_equiv 56.36 _atom_site.pdbx_formal_charge -1 _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 207 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #