data_8U1F
#
_model_server_result.job_id            dEQpGl6KytxwLLii6prZMQ 
_model_server_result.datetime_utc      '2024-10-12 21:18:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    8U1F 
#
_exptl.entry_id    8U1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              493.56 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[4-(4-amino-7-methyl-5-{4-[(4-methylpyrimidin-2-yl)oxy]phenyl}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)phenyl]-2-methylpropanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U1F 
_cell.length_a            62.513 
_cell.length_b            88.28 
_cell.length_c            129.132 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 39 A CYS 491 1_555 D C01 UIM . A UIM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
covale ? covale2 B SG CYS 39 B CYS 491 1_555 F C01 UIM . B UIM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
#
_chem_comp.formula           'C28 H27 N7 O2' 
_chem_comp.formula_weight    493.56 
_chem_comp.id                UIM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[4-(4-amino-7-methyl-5-{4-[(4-methylpyrimidin-2-yl)oxy]phenyl}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)phenyl]-2-methylpropanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 C01 UIM sing 373 n n 
C05 N04 UIM sing 374 n n 
C06 C05 UIM doub 375 n y 
C07 C06 UIM sing 376 n y 
C08 C07 UIM doub 377 n y 
C11 C10 UIM sing 378 n n 
C12 C11 UIM doub 379 n y 
C13 C12 UIM sing 380 n y 
C14 C13 UIM doub 381 n y 
C16 O15 UIM sing 382 n n 
N17 C16 UIM doub 383 n y 
C18 N17 UIM sing 384 n y 
C19 C18 UIM sing 385 n n 
C20 C18 UIM doub 386 n y 
C21 C20 UIM sing 387 n y 
N22 C21 UIM doub 388 n y 
O15 C14 UIM sing 389 n n 
C23 C14 UIM sing 390 n y 
C24 C23 UIM doub 391 n y 
C10 C09 UIM doub 392 n y 
N25 C09 UIM sing 393 n y 
C26 N25 UIM sing 394 n n 
C27 N25 UIM sing 395 n y 
C28 C27 UIM doub 396 n y 
C29 C28 UIM sing 397 n y 
N30 C29 UIM sing 398 n n 
N31 C29 UIM doub 399 n y 
C32 N31 UIM sing 400 n y 
N33 C32 UIM doub 401 n y 
C09 C08 UIM sing 402 n n 
C34 C08 UIM sing 403 n y 
C35 C34 UIM doub 404 n y 
N04 C03 UIM sing 405 n n 
O36 C03 UIM doub 406 n n 
C03 C02 UIM sing 407 n n 
C37 C02 UIM sing 408 n n 
C05 C35 UIM sing 409 n y 
C10 C28 UIM sing 410 n y 
C11 C24 UIM sing 411 n y 
C16 N22 UIM sing 412 n y 
C27 N33 UIM sing 413 n y 
C13 H131 UIM sing 414 n n 
C20 H201 UIM sing 415 n n 
C21 H211 UIM sing 416 n n 
C24 H241 UIM sing 417 n n 
C26 H261 UIM sing 418 n n 
C26 H263 UIM sing 419 n n 
C26 H262 UIM sing 420 n n 
C01 H012 UIM sing 421 n n 
C01 H011 UIM sing 422 n n 
C01 H013 UIM sing 423 n n 
C02 H021 UIM sing 424 n n 
C06 H061 UIM sing 425 n n 
C07 H071 UIM sing 426 n n 
C12 H121 UIM sing 427 n n 
C19 H193 UIM sing 428 n n 
C19 H191 UIM sing 429 n n 
C19 H192 UIM sing 430 n n 
C23 H231 UIM sing 431 n n 
C32 H321 UIM sing 432 n n 
C34 H341 UIM sing 433 n n 
C35 H351 UIM sing 434 n n 
C37 H371 UIM sing 435 n n 
C37 H1 UIM sing 436 n n 
C37 H2 UIM sing 437 n n 
N04 H041 UIM sing 438 n n 
N30 H301 UIM sing 439 n n 
N30 H302 UIM sing 440 n n 
#
_atom_sites.entry_id                     8U1F 
_atom_sites.fract_transf_matrix[1][1]    0.015997 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 801 801 GOL GOL . 
D 3 UIM A 1 802 1 UIM LIG . 
E 4 SO4 B 1 801 801 SO4 SO4 . 
F 3 UIM B 1 802 2 UIM LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 UIM . . . D 3 -26.682 25.315 27.537 1 56.16 ? C10 UIM 802 A 1 
HETATM 2 C C13 UIM . . . D 3 -27.548 21.741 26.325 1 52.89 ? C13 UIM 802 A 1 
HETATM 3 C C20 UIM . . . D 3 -28.215 17.034 27.083 1 61.51 ? C20 UIM 802 A 1 
HETATM 4 C C21 UIM . . . D 3 -28.054 18.004 27.905 1 56.6 ? C21 UIM 802 A 1 
HETATM 5 C C24 UIM . . . D 3 -28.77 24.082 27.347 1 51.02 ? C24 UIM 802 A 1 
HETATM 6 C C26 UIM . . . D 3 -24.497 27.854 26.844 1 54.78 ? C26 UIM 802 A 1 
HETATM 7 C C28 UIM . . . D 3 -26.861 25.902 28.857 1 52.47 ? C28 UIM 802 A 1 
HETATM 8 C C01 UIM . . . D 3 -23.161 24.25 18.331 1 63.62 ? C01 UIM 802 A 1 
HETATM 9 C C02 UIM . . . D 3 -22.27 24.662 19.496 1 69.27 ? C02 UIM 802 A 1 
HETATM 10 C C03 UIM . . . D 3 -23.071 25.273 20.652 1 61 ? C03 UIM 802 A 1 
HETATM 11 C C05 UIM . . . D 3 -24.395 24.781 22.766 1 54.37 ? C05 UIM 802 A 1 
HETATM 12 C C06 UIM . . . D 3 -23.519 24.772 24.007 1 59.6 ? C06 UIM 802 A 1 
HETATM 13 C C07 UIM . . . D 3 -24.014 25.119 25.159 1 54.88 ? C07 UIM 802 A 1 
HETATM 14 C C08 UIM . . . D 3 -25.473 25.528 25.276 1 52.67 ? C08 UIM 802 A 1 
HETATM 15 C C09 UIM . . . D 3 -25.895 25.906 26.692 1 54.35 ? C09 UIM 802 A 1 
HETATM 16 C C11 UIM . . . D 3 -27.469 24.055 27.172 1 51.51 ? C11 UIM 802 A 1 
HETATM 17 C C12 UIM . . . D 3 -26.809 22.794 26.62 1 52.42 ? C12 UIM 802 A 1 
HETATM 18 C C14 UIM . . . D 3 -29.063 21.78 26.54 1 52.82 ? C14 UIM 802 A 1 
HETATM 19 C C16 UIM . . . D 3 -29.321 19.465 26.546 1 53.06 ? C16 UIM 802 A 1 
HETATM 20 C C18 UIM . . . D 3 -29.008 17.227 25.838 1 63.18 ? C18 UIM 802 A 1 
HETATM 21 C C19 UIM . . . D 3 -29.197 16.068 24.862 1 66.8 ? C19 UIM 802 A 1 
HETATM 22 C C23 UIM . . . D 3 -29.622 22.867 27.01 1 54.2 ? C23 UIM 802 A 1 
HETATM 23 C C27 UIM . . . D 3 -25.948 27.076 28.741 1 51.27 ? C27 UIM 802 A 1 
HETATM 24 C C29 UIM . . . D 3 -27.516 25.758 30.04 1 51.78 ? C29 UIM 802 A 1 
HETATM 25 C C32 UIM . . . D 3 -26.439 27.681 30.788 1 53.66 ? C32 UIM 802 A 1 
HETATM 26 C C34 UIM . . . D 3 -26.253 25.536 24.211 1 56.6 ? C34 UIM 802 A 1 
HETATM 27 C C35 UIM . . . D 3 -25.666 25.126 22.848 1 58.31 ? C35 UIM 802 A 1 
HETATM 28 C C37 UIM . . . D 3 -21.195 25.659 19.042 1 71.65 ? C37 UIM 802 A 1 
HETATM 29 N N04 UIM . . . D 3 -23.672 24.348 21.588 1 54.28 ? N04 UIM 802 A 1 
HETATM 30 N N17 UIM . . . D 3 -29.513 18.34 25.597 1 60.62 ? N17 UIM 802 A 1 
HETATM 31 N N22 UIM . . . D 3 -28.642 19.3 27.625 1 49.91 ? N22 UIM 802 A 1 
HETATM 32 N N25 UIM . . . D 3 -25.452 26.91 27.401 1 53.24 ? N25 UIM 802 A 1 
HETATM 33 N N30 UIM . . . D 3 -28.434 24.645 30.25 1 53.08 ? N30 UIM 802 A 1 
HETATM 34 N N31 UIM . . . D 3 -27.308 26.649 31.02 1 56.76 ? N31 UIM 802 A 1 
HETATM 35 N N33 UIM . . . D 3 -25.724 27.958 29.675 1 50.48 ? N33 UIM 802 A 1 
HETATM 36 O O15 UIM . . . D 3 -29.902 20.698 26.241 1 53.6 ? O15 UIM 802 A 1 
HETATM 37 O O36 UIM . . . D 3 -23.192 26.444 20.786 1 59.01 ? O36 UIM 802 A 1 
HETATM 38 H H131 UIM . . . D 3 -27.147 20.974 25.986 1 63.47 ? H131 UIM 802 A 1 
HETATM 39 H H201 UIM . . . D 3 -27.834 16.206 27.265 1 73.81 ? H201 UIM 802 A 1 
HETATM 40 H H211 UIM . . . D 3 -27.558 17.877 28.682 1 67.92 ? H211 UIM 802 A 1 
HETATM 41 H H241 UIM . . . D 3 -29.174 24.85 27.681 1 61.22 ? H241 UIM 802 A 1 
HETATM 42 H H261 UIM . . . D 3 -23.643 27.464 26.832 1 65.73 ? H261 UIM 802 A 1 
HETATM 43 H H263 UIM . . . D 3 -24.752 28.076 25.968 1 65.73 ? H263 UIM 802 A 1 
HETATM 44 H H262 UIM . . . D 3 -24.48 28.63 27.372 1 65.73 ? H262 UIM 802 A 1 
HETATM 45 H H012 UIM . . . D 3 -22.914 23.374 18.046 1 76.35 ? H012 UIM 802 A 1 
HETATM 46 H H011 UIM . . . D 3 -23.054 24.856 17.608 1 76.35 ? H011 UIM 802 A 1 
HETATM 47 H H021 UIM . . . D 3 -21.86 23.877 19.807 1 83.12 ? H021 UIM 802 A 1 
HETATM 48 H H061 UIM . . . D 3 -22.627 24.518 23.943 1 71.52 ? H061 UIM 802 A 1 
HETATM 49 H H071 UIM . . . D 3 -23.472 25.116 25.915 1 65.85 ? H071 UIM 802 A 1 
HETATM 50 H H121 UIM . . . D 3 -25.888 22.768 26.491 1 62.91 ? H121 UIM 802 A 1 
HETATM 51 H H193 UIM . . . D 3 -28.509 15.441 24.984 1 80.16 ? H193 UIM 802 A 1 
HETATM 52 H H191 UIM . . . D 3 -29.172 16.393 23.982 1 80.16 ? H191 UIM 802 A 1 
HETATM 53 H H192 UIM . . . D 3 -30.027 15.658 25.021 1 80.16 ? H192 UIM 802 A 1 
HETATM 54 H H231 UIM . . . D 3 -30.543 22.897 27.138 1 65.04 ? H231 UIM 802 A 1 
HETATM 55 H H321 UIM . . . D 3 -26.325 28.274 31.494 1 64.39 ? H321 UIM 802 A 1 
HETATM 56 H H341 UIM . . . D 3 -27.146 25.786 24.283 1 67.92 ? H341 UIM 802 A 1 
HETATM 57 H H351 UIM . . . D 3 -26.202 25.122 22.088 1 69.97 ? H351 UIM 802 A 1 
HETATM 58 H H371 UIM . . . D 3 -20.77 26.025 19.795 1 85.97 ? H371 UIM 802 A 1 
HETATM 59 H H1 UIM . . . D 3 -21.596 26.347 18.544 1 85.97 ? H1 UIM 802 A 1 
HETATM 60 H H2 UIM . . . D 3 -20.562 25.215 18.51 1 85.97 ? H2 UIM 802 A 1 
HETATM 61 H H041 UIM . . . D 3 -23.597 23.497 21.436 1 65.14 ? H041 UIM 802 A 1 
HETATM 62 H H301 UIM . . . D 3 -28.154 23.826 30.169 1 63.7 ? H301 UIM 802 A 1 
HETATM 63 H H302 UIM . . . D 3 -29.263 24.796 30.456 1 63.7 ? H302 UIM 802 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           63 
#