data_8U1F
#
_model_server_result.job_id            co0xF2zE5h3vQn0mo2xrXQ 
_model_server_result.datetime_utc      '2024-10-12 21:21:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    8U1F 
#
_exptl.entry_id    8U1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              493.56 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[4-(4-amino-7-methyl-5-{4-[(4-methylpyrimidin-2-yl)oxy]phenyl}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)phenyl]-2-methylpropanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U1F 
_cell.length_a            62.513 
_cell.length_b            88.28 
_cell.length_c            129.132 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 39 A CYS 491 1_555 D C01 UIM . A UIM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
covale ? covale2 B SG CYS 39 B CYS 491 1_555 F C01 UIM . B UIM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
#
_chem_comp.formula           'C28 H27 N7 O2' 
_chem_comp.formula_weight    493.56 
_chem_comp.id                UIM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[4-(4-amino-7-methyl-5-{4-[(4-methylpyrimidin-2-yl)oxy]phenyl}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)phenyl]-2-methylpropanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 C01 UIM sing 373 n n 
C05 N04 UIM sing 374 n n 
C06 C05 UIM doub 375 n y 
C07 C06 UIM sing 376 n y 
C08 C07 UIM doub 377 n y 
C11 C10 UIM sing 378 n n 
C12 C11 UIM doub 379 n y 
C13 C12 UIM sing 380 n y 
C14 C13 UIM doub 381 n y 
C16 O15 UIM sing 382 n n 
N17 C16 UIM doub 383 n y 
C18 N17 UIM sing 384 n y 
C19 C18 UIM sing 385 n n 
C20 C18 UIM doub 386 n y 
C21 C20 UIM sing 387 n y 
N22 C21 UIM doub 388 n y 
O15 C14 UIM sing 389 n n 
C23 C14 UIM sing 390 n y 
C24 C23 UIM doub 391 n y 
C10 C09 UIM doub 392 n y 
N25 C09 UIM sing 393 n y 
C26 N25 UIM sing 394 n n 
C27 N25 UIM sing 395 n y 
C28 C27 UIM doub 396 n y 
C29 C28 UIM sing 397 n y 
N30 C29 UIM sing 398 n n 
N31 C29 UIM doub 399 n y 
C32 N31 UIM sing 400 n y 
N33 C32 UIM doub 401 n y 
C09 C08 UIM sing 402 n n 
C34 C08 UIM sing 403 n y 
C35 C34 UIM doub 404 n y 
N04 C03 UIM sing 405 n n 
O36 C03 UIM doub 406 n n 
C03 C02 UIM sing 407 n n 
C37 C02 UIM sing 408 n n 
C05 C35 UIM sing 409 n y 
C10 C28 UIM sing 410 n y 
C11 C24 UIM sing 411 n y 
C16 N22 UIM sing 412 n y 
C27 N33 UIM sing 413 n y 
C13 H131 UIM sing 414 n n 
C20 H201 UIM sing 415 n n 
C21 H211 UIM sing 416 n n 
C24 H241 UIM sing 417 n n 
C26 H261 UIM sing 418 n n 
C26 H263 UIM sing 419 n n 
C26 H262 UIM sing 420 n n 
C01 H012 UIM sing 421 n n 
C01 H011 UIM sing 422 n n 
C01 H013 UIM sing 423 n n 
C02 H021 UIM sing 424 n n 
C06 H061 UIM sing 425 n n 
C07 H071 UIM sing 426 n n 
C12 H121 UIM sing 427 n n 
C19 H193 UIM sing 428 n n 
C19 H191 UIM sing 429 n n 
C19 H192 UIM sing 430 n n 
C23 H231 UIM sing 431 n n 
C32 H321 UIM sing 432 n n 
C34 H341 UIM sing 433 n n 
C35 H351 UIM sing 434 n n 
C37 H371 UIM sing 435 n n 
C37 H1 UIM sing 436 n n 
C37 H2 UIM sing 437 n n 
N04 H041 UIM sing 438 n n 
N30 H301 UIM sing 439 n n 
N30 H302 UIM sing 440 n n 
#
_atom_sites.entry_id                     8U1F 
_atom_sites.fract_transf_matrix[1][1]    0.015997 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 801 801 GOL GOL . 
D 3 UIM A 1 802 1 UIM LIG . 
E 4 SO4 B 1 801 801 SO4 SO4 . 
F 3 UIM B 1 802 2 UIM LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 UIM . . . F 3 -33.455 -3.137 0.472 0.96 63.96 ? C10 UIM 802 B 1 
HETATM 2 C C13 UIM . . . F 3 -34.587 -0.843 -2.453 0.96 64.03 ? C13 UIM 802 B 1 
HETATM 3 C C20 UIM . . . F 3 -35.579 -0.765 -7.534 0.96 68.86 ? C20 UIM 802 B 1 
HETATM 4 C C21 UIM . . . F 3 -35.21 -1.73 -6.774 0.96 72.21 ? C21 UIM 802 B 1 
HETATM 5 C C24 UIM . . . F 3 -35.528 -2.944 -0.81 0.96 67 ? C24 UIM 802 B 1 
HETATM 6 C C26 UIM . . . F 3 -31.418 -2.939 3.225 0.96 69.61 ? C26 UIM 802 B 1 
HETATM 7 C C28 UIM . . . F 3 -33.399 -4.585 0.616 0.96 63.42 ? C28 UIM 802 B 1 
HETATM 8 C C01 UIM . . . F 3 -32.121 6.163 2.621 0.96 67.9 ? C01 UIM 802 B 1 
HETATM 9 C C02 UIM . . . F 3 -30.829 5.354 2.707 0.96 67.14 ? C02 UIM 802 B 1 
HETATM 10 C C03 UIM . . . F 3 -31.203 3.878 2.781 0.96 71.79 ? C03 UIM 802 B 1 
HETATM 11 C C05 UIM . . . F 3 -32.061 1.855 1.534 0.96 66.69 ? C05 UIM 802 B 1 
HETATM 12 C C06 UIM . . . F 3 -30.931 0.844 1.396 0.96 67.06 ? C06 UIM 802 B 1 
HETATM 13 C C07 UIM . . . F 3 -31.214 -0.428 1.348 0.96 67.46 ? C07 UIM 802 B 1 
HETATM 14 C C08 UIM . . . F 3 -32.662 -0.898 1.436 0.96 66.69 ? C08 UIM 802 B 1 
HETATM 15 C C09 UIM . . . F 3 -32.831 -2.409 1.347 0.96 66.76 ? C09 UIM 802 B 1 
HETATM 16 C C11 UIM . . . F 3 -34.302 -2.5 -0.64 0.96 62.71 ? C11 UIM 802 B 1 
HETATM 17 C C12 UIM . . . F 3 -33.802 -1.358 -1.523 0.96 64 ? C12 UIM 802 B 1 
HETATM 18 C C14 UIM . . . F 3 -36.003 -1.385 -2.654 0.96 68.73 ? C14 UIM 802 B 1 
HETATM 19 C C16 UIM . . . F 3 -36.42 -0.863 -4.929 0.96 67.07 ? C16 UIM 802 B 1 
HETATM 20 C C18 UIM . . . F 3 -36.47 0.303 -6.998 0.96 69.9 ? C18 UIM 802 B 1 
HETATM 21 C C19 UIM . . . F 3 -36.92 1.458 -7.89 0.96 75.06 ? C19 UIM 802 B 1 
HETATM 22 C C23 UIM . . . F 3 -36.434 -2.353 -1.884 0.96 69.01 ? C23 UIM 802 B 1 
HETATM 23 C C27 UIM . . . F 3 -32.511 -4.693 1.813 0.96 66.13 ? C27 UIM 802 B 1 
HETATM 24 C C29 UIM . . . F 3 -33.826 -5.759 0.08 0.96 64.2 ? C29 UIM 802 B 1 
HETATM 25 C C32 UIM . . . F 3 -32.622 -6.871 1.735 0.96 71.33 ? C32 UIM 802 B 1 
HETATM 26 C C34 UIM . . . F 3 -33.647 -0.031 1.541 0.96 64.02 ? C34 UIM 802 B 1 
HETATM 27 C C35 UIM . . . F 3 -33.316 1.463 1.596 0.96 65.02 ? C35 UIM 802 B 1 
HETATM 28 C C37 UIM . . . F 3 -30.013 5.755 3.934 0.96 66.5 ? C37 UIM 802 B 1 
HETATM 29 N N04 UIM . . . F 3 -31.698 3.254 1.571 0.96 70.32 ? N04 UIM 802 B 1 
HETATM 30 N N17 UIM . . . F 3 -36.852 0.249 -5.812 0.96 71.54 ? N17 UIM 802 B 1 
HETATM 31 N N22 UIM . . . F 3 -35.656 -1.791 -5.389 0.96 68.05 ? N22 UIM 802 B 1 
HETATM 32 N N25 UIM . . . F 3 -32.261 -3.311 2.101 0.96 67.79 ? N25 UIM 802 B 1 
HETATM 33 N N30 UIM . . . F 3 -34.694 -5.774 -1.087 0.96 67.76 ? N30 UIM 802 B 1 
HETATM 34 N N31 UIM . . . F 3 -33.441 -6.915 0.639 0.96 69 ? N31 UIM 802 B 1 
HETATM 35 N N33 UIM . . . F 3 -32.116 -5.797 2.379 0.96 65.76 ? N33 UIM 802 B 1 
HETATM 36 O O15 UIM . . . F 3 -36.889 -0.87 -3.61 0.96 70.57 ? O15 UIM 802 B 1 
HETATM 37 O O36 UIM . . . F 3 -31.097 3.279 3.798 0.96 77.64 ? O36 UIM 802 B 1 
HETATM 38 H H131 UIM . . . F 3 -34.278 -0.148 -2.988 0.96 76.84 ? H131 UIM 802 B 1 
HETATM 39 H H201 UIM . . . F 3 -35.291 -0.731 -8.418 0.96 82.64 ? H201 UIM 802 B 1 
HETATM 40 H H211 UIM . . . F 3 -34.653 -2.395 -7.109 0.96 86.65 ? H211 UIM 802 B 1 
HETATM 41 H H241 UIM . . . F 3 -35.847 -3.629 -0.267 0.96 80.4 ? H241 UIM 802 B 1 
HETATM 42 H H261 UIM . . . F 3 -30.547 -2.768 2.92 0.96 83.53 ? H261 UIM 802 B 1 
HETATM 43 H H263 UIM . . . F 3 -31.763 -2.167 3.633 0.96 83.53 ? H263 UIM 802 B 1 
HETATM 44 H H262 UIM . . . F 3 -31.4 -3.641 3.848 0.96 83.53 ? H262 UIM 802 B 1 
HETATM 45 H H012 UIM . . . F 3 -32.031 6.874 1.994 0.96 81.48 ? H012 UIM 802 B 1 
HETATM 46 H H011 UIM . . . F 3 -32.35 6.504 3.477 0.96 81.48 ? H011 UIM 802 B 1 
HETATM 47 H H021 UIM . . . F 3 -30.299 5.522 1.95 0.96 80.57 ? H021 UIM 802 B 1 
HETATM 48 H H061 UIM . . . F 3 -30.048 1.131 1.347 0.96 80.48 ? H061 UIM 802 B 1 
HETATM 49 H H071 UIM . . . F 3 -30.529 -1.051 1.259 0.96 80.95 ? H071 UIM 802 B 1 
HETATM 50 H H121 UIM . . . F 3 -32.943 -1.023 -1.406 0.96 76.8 ? H121 UIM 802 B 1 
HETATM 51 H H193 UIM . . . F 3 -36.343 2.189 -7.77 0.96 90.07 ? H193 UIM 802 B 1 
HETATM 52 H H191 UIM . . . F 3 -37.795 1.709 -7.66 0.96 90.07 ? H191 UIM 802 B 1 
HETATM 53 H H192 UIM . . . F 3 -36.898 1.187 -8.789 0.96 90.07 ? H192 UIM 802 B 1 
HETATM 54 H H231 UIM . . . F 3 -37.298 -2.681 -1.992 0.96 82.81 ? H231 UIM 802 B 1 
HETATM 55 H H321 UIM . . . F 3 -32.379 -7.697 2.085 0.96 85.59 ? H321 UIM 802 B 1 
HETATM 56 H H341 UIM . . . F 3 -34.529 -0.321 1.581 0.96 76.83 ? H341 UIM 802 B 1 
HETATM 57 H H351 UIM . . . F 3 -33.998 2.09 1.673 0.96 78.02 ? H351 UIM 802 B 1 
HETATM 58 H H371 UIM . . . F 3 -29.281 5.174 4.025 0.96 79.8 ? H371 UIM 802 B 1 
HETATM 59 H H1 UIM . . . F 3 -30.553 5.7 4.7 0.96 79.8 ? H1 UIM 802 B 1 
HETATM 60 H H2 UIM . . . F 3 -29.704 6.635 3.83 0.96 79.8 ? H2 UIM 802 B 1 
HETATM 61 H H041 UIM . . . F 3 -31.78 3.732 0.851 0.96 84.38 ? H041 UIM 802 B 1 
HETATM 62 H H301 UIM . . . F 3 -34.572 -5.203 -1.731 0.96 81.31 ? H301 UIM 802 B 1 
HETATM 63 H H302 UIM . . . F 3 -35.332 -6.358 -1.147 0.96 81.31 ? H302 UIM 802 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           63 
#