data_8U1H # _model_server_result.job_id gjaTXn_vAwIEGvvgMvgOgw _model_server_result.datetime_utc '2024-10-18 23:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":501}' # _entry.id 8U1H # _exptl.entry_id 8U1H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U1H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 K N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 H O1G ANP . A ANP 601 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc3 H O3G ANP . A ANP 601 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 H O2B ANP . A ANP 601 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 C OG1 THR 176 C THR 176 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 K O1G ANP . C ANP 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc7 K O3G ANP . C ANP 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc8 K O2B ANP . C ANP 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc9 D OG1 THR 176 D THR 165 1_555 N MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc10 M O3B ADP . D ADP 501 1_555 N MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc11 N MG MG . D MG 502 1_555 O O3 PO4 . D PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc12 N MG MG . D MG 502 1_555 O O4 PO4 . D PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc13 F OG1 THR 176 F THR 165 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc14 F OE2 GLU 205 F GLU 194 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc15 Q O2G ANP . F ANP 501 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc16 Q O2B ANP . F ANP 501 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 8U1H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 ANP A 1 601 601 ANP ANP . I 5 MG A 1 602 602 MG MG . J 4 ANP B 1 601 501 ANP ANP . K 4 ANP C 1 601 501 ANP ANP . L 5 MG C 1 602 502 MG MG . M 6 ADP D 1 501 490 ADP ADP . N 5 MG D 1 502 491 MG MG . O 7 PO4 D 1 503 492 PO4 PO4 . P 7 PO4 E 1 501 490 PO4 PO4 . Q 4 ANP F 1 501 490 ANP ANP . R 5 MG F 1 502 491 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . Q 4 105.134 119.199 80.979 1 71.91 ? PG ANP 501 F 1 HETATM 2 O O1G ANP . . . Q 4 105.946 118.422 79.996 1 70.19 ? O1G ANP 501 F 1 HETATM 3 O O2G ANP . . . Q 4 105.466 120.732 80.832 1 64.36 ? O2G ANP 501 F 1 HETATM 4 O O3G ANP . . . Q 4 105.489 118.725 82.443 1 66.68 ? O3G ANP 501 F 1 HETATM 5 P PB ANP . . . Q 4 102.665 120.344 81.09 1 67.52 ? PB ANP 501 F 1 HETATM 6 O O1B ANP . . . Q 4 102.668 120.505 82.571 1 63.72 ? O1B ANP 501 F 1 HETATM 7 O O2B ANP . . . Q 4 103.395 121.549 80.438 1 73.15 ? O2B ANP 501 F 1 HETATM 8 N N3B ANP . . . Q 4 103.49 118.95 80.676 1 63.93 ? N3B ANP 501 F 1 HETATM 9 P PA ANP . . . Q 4 100.799 121.257 79.371 1 78.17 ? PA ANP 501 F 1 HETATM 10 O O1A ANP . . . Q 4 100.365 122.58 79.862 1 68.88 ? O1A ANP 501 F 1 HETATM 11 O O2A ANP . . . Q 4 102.007 121.308 78.432 1 66.82 ? O2A ANP 501 F 1 HETATM 12 O O3A ANP . . . Q 4 101.204 120.297 80.563 1 66.64 ? O3A ANP 501 F 1 HETATM 13 O O5' ANP . . . Q 4 99.554 120.569 78.691 1 61.68 ? O5' ANP 501 F 1 HETATM 14 C C5' ANP . . . Q 4 98.725 119.646 79.416 1 60.17 ? C5' ANP 501 F 1 HETATM 15 C C4' ANP . . . Q 4 97.335 119.707 78.839 1 64.46 ? C4' ANP 501 F 1 HETATM 16 O O4' ANP . . . Q 4 96.514 120.552 79.661 1 60.85 ? O4' ANP 501 F 1 HETATM 17 C C3' ANP . . . Q 4 97.247 120.284 77.425 1 67.07 ? C3' ANP 501 F 1 HETATM 18 O O3' ANP . . . Q 4 97.045 119.252 76.468 1 71.57 ? O3' ANP 501 F 1 HETATM 19 C C2' ANP . . . Q 4 96.037 121.234 77.469 1 65.49 ? C2' ANP 501 F 1 HETATM 20 O O2' ANP . . . Q 4 95.087 120.891 76.467 1 66.69 ? O2' ANP 501 F 1 HETATM 21 C C1' ANP . . . Q 4 95.451 121.01 78.863 1 62.98 ? C1' ANP 501 F 1 HETATM 22 N N9 ANP . . . Q 4 94.904 122.216 79.472 1 66.76 ? N9 ANP 501 F 1 HETATM 23 C C8 ANP . . . Q 4 95.525 123.051 80.363 1 61 ? C8 ANP 501 F 1 HETATM 24 N N7 ANP . . . Q 4 94.79 124.067 80.745 1 62.7 ? N7 ANP 501 F 1 HETATM 25 C C5 ANP . . . Q 4 93.602 123.891 80.051 1 67.89 ? C5 ANP 501 F 1 HETATM 26 C C6 ANP . . . Q 4 92.407 124.634 80.014 1 63.84 ? C6 ANP 501 F 1 HETATM 27 N N6 ANP . . . Q 4 92.203 125.748 80.72 1 62.25 ? N6 ANP 501 F 1 HETATM 28 N N1 ANP . . . Q 4 91.412 124.182 79.218 1 67.03 ? N1 ANP 501 F 1 HETATM 29 C C2 ANP . . . Q 4 91.61 123.066 78.512 1 68.41 ? C2 ANP 501 F 1 HETATM 30 N N3 ANP . . . Q 4 92.692 122.284 78.466 1 69.85 ? N3 ANP 501 F 1 HETATM 31 C C4 ANP . . . Q 4 93.659 122.755 79.263 1 71.61 ? C4 ANP 501 F 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #