data_8U1H # _model_server_result.job_id '_fcPyAk2f3IPwTyNIOfLgQ' _model_server_result.datetime_utc '2024-12-01 00:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 8U1H # _exptl.entry_id 8U1H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U1H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 K N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 H O1G ANP . A ANP 601 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc3 H O3G ANP . A ANP 601 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 H O2B ANP . A ANP 601 1_555 I MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 C OG1 THR 176 C THR 176 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 K O1G ANP . C ANP 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc7 K O3G ANP . C ANP 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc8 K O2B ANP . C ANP 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc9 D OG1 THR 176 D THR 165 1_555 N MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc10 M O3B ADP . D ADP 501 1_555 N MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc11 N MG MG . D MG 502 1_555 O O3 PO4 . D PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc12 N MG MG . D MG 502 1_555 O O4 PO4 . D PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc13 F OG1 THR 176 F THR 165 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc14 F OE2 GLU 205 F GLU 194 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc15 Q O2G ANP . F ANP 501 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc16 Q O2B ANP . F ANP 501 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 8U1H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 ANP A 1 601 601 ANP ANP . I 5 MG A 1 602 602 MG MG . J 4 ANP B 1 601 501 ANP ANP . K 4 ANP C 1 601 501 ANP ANP . L 5 MG C 1 602 502 MG MG . M 6 ADP D 1 501 490 ADP ADP . N 5 MG D 1 502 491 MG MG . O 7 PO4 D 1 503 492 PO4 PO4 . P 7 PO4 E 1 501 490 PO4 PO4 . Q 4 ANP F 1 501 490 ANP ANP . R 5 MG F 1 502 491 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . J 4 101.93 93.577 72.828 1 93.26 ? PG ANP 601 B 1 HETATM 2 O O1G ANP . . . J 4 101.786 92.259 72.135 1 86.02 ? O1G ANP 601 B 1 HETATM 3 O O2G ANP . . . J 4 102.548 93.357 74.262 1 90.38 ? O2G ANP 601 B 1 HETATM 4 O O3G ANP . . . J 4 102.875 94.521 71.982 1 91.36 ? O3G ANP 601 B 1 HETATM 5 P PB ANP . . . J 4 100.12 95.209 71.588 1 91.04 ? PB ANP 601 B 1 HETATM 6 O O1B ANP . . . J 4 100.194 96.66 71.919 1 86.04 ? O1B ANP 601 B 1 HETATM 7 O O2B ANP . . . J 4 101.195 94.858 70.521 1 89.98 ? O2B ANP 601 B 1 HETATM 8 N N3B ANP . . . J 4 100.413 94.308 72.966 1 92.75 ? N3B ANP 601 B 1 HETATM 9 P PA ANP . . . J 4 98.589 94.528 69.477 1 100.75 ? PA ANP 601 B 1 HETATM 10 O O1A ANP . . . J 4 98.518 95.755 68.652 1 96.25 ? O1A ANP 601 B 1 HETATM 11 O O2A ANP . . . J 4 99.771 93.612 69.146 1 89.56 ? O2A ANP 601 B 1 HETATM 12 O O3A ANP . . . J 4 98.712 94.88 71.017 1 93.83 ? O3A ANP 601 B 1 HETATM 13 O O5' ANP . . . J 4 97.207 93.777 69.329 1 92.92 ? O5' ANP 601 B 1 HETATM 14 C C5' ANP . . . J 4 96.793 92.782 70.28 1 91.87 ? C5' ANP 601 B 1 HETATM 15 C C4' ANP . . . J 4 95.658 91.992 69.681 1 93.88 ? C4' ANP 601 B 1 HETATM 16 O O4' ANP . . . J 4 94.48 92.824 69.609 1 96.56 ? O4' ANP 601 B 1 HETATM 17 C C3' ANP . . . J 4 95.905 91.449 68.27 1 94.35 ? C3' ANP 601 B 1 HETATM 18 O O3' ANP . . . J 4 95.598 90.062 68.199 1 93.24 ? O3' ANP 601 B 1 HETATM 19 C C2' ANP . . . J 4 94.97 92.287 67.388 1 93.44 ? C2' ANP 601 B 1 HETATM 20 O O2' ANP . . . J 4 94.46 91.53 66.296 1 92.3 ? O2' ANP 601 B 1 HETATM 21 C C1' ANP . . . J 4 93.85 92.632 68.363 1 95.63 ? C1' ANP 601 B 1 HETATM 22 N N9 ANP . . . J 4 93.118 93.847 68.025 1 93.37 ? N9 ANP 601 B 1 HETATM 23 C C8 ANP . . . J 4 93.607 95.127 67.995 1 93.62 ? C8 ANP 601 B 1 HETATM 24 N N7 ANP . . . J 4 92.719 96.031 67.659 1 92.85 ? N7 ANP 601 B 1 HETATM 25 C C5 ANP . . . J 4 91.561 95.294 67.456 1 95.36 ? C5 ANP 601 B 1 HETATM 26 C C6 ANP . . . J 4 90.256 95.664 67.079 1 95.3 ? C6 ANP 601 B 1 HETATM 27 N N6 ANP . . . J 4 89.883 96.921 66.831 1 92.2 ? N6 ANP 601 B 1 HETATM 28 N N1 ANP . . . J 4 89.335 94.682 66.965 1 95.77 ? N1 ANP 601 B 1 HETATM 29 C C2 ANP . . . J 4 89.703 93.422 67.214 1 95.08 ? C2 ANP 601 B 1 HETATM 30 N N3 ANP . . . J 4 90.901 92.954 67.575 1 93.83 ? N3 ANP 601 B 1 HETATM 31 C C4 ANP . . . J 4 91.792 93.948 67.679 1 94.18 ? C4 ANP 601 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #