data_8U2P
#
_model_server_result.job_id            LrfX9OuHchoTYV0eMTy1Aw 
_model_server_result.datetime_utc      '2024-12-02 08:21:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u2p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    8U2P 
#
_exptl.entry_id    8U2P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              403.371 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(glycylsulfamoyl)adenosine" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8U2P 
_cell.length_a            124.293 
_cell.length_b            124.293 
_cell.length_c            131.383 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U2P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 21.897167 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 297 A GLU 282 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc2 A OE2 GLU 297 A GLU 282 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc3 B O1S G5A . A G5A 501 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 H O1 EDO . A EDO 507 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc5 I MG MG . A MG 508 1_555 L O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc6 I MG MG . A MG 508 1_555 L O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc7 I MG MG . A MG 508 1_555 L O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
#
_chem_comp.formula           'C12 H17 N7 O7 S' 
_chem_comp.formula_weight    403.371 
_chem_comp.id                G5A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(glycylsulfamoyl)adenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N3S G5A sing 92 n n 
N CA G5A sing 93 n n 
N HN G5A sing 94 n n 
N HNA G5A sing 95 n n 
O C G5A doub 96 n n 
S O5' G5A sing 97 n n 
S O2S G5A doub 98 n n 
N1 C2 G5A sing 99 n y 
C2 H2 G5A sing 100 n n 
N3 C2 G5A doub 101 n y 
C4 N3 G5A sing 102 n y 
C5 C4 G5A doub 103 n y 
C5 C6 G5A sing 104 n y 
C6 N1 G5A doub 105 n y 
N6 C6 G5A sing 106 n n 
N6 HN6 G5A sing 107 n n 
N6 HN6A G5A sing 108 n n 
N7 C5 G5A sing 109 n y 
N7 C8 G5A doub 110 n y 
C8 N9 G5A sing 111 n y 
C8 H8 G5A sing 112 n n 
N9 C4 G5A sing 113 n y 
N9 C1' G5A sing 114 n n 
CA C G5A sing 115 n n 
CA HA G5A sing 116 n n 
CA HAA G5A sing 117 n n 
C1' C2' G5A sing 118 n n 
C1' H1' G5A sing 119 n n 
O1S S G5A doub 120 n n 
C2' O2' G5A sing 121 n n 
C2' H2' G5A sing 122 n n 
O2' HO2' G5A sing 123 n n 
C3' C2' G5A sing 124 n n 
C3' O3' G5A sing 125 n n 
N3S S G5A sing 126 n n 
N3S HN3S G5A sing 127 n n 
C4' C3' G5A sing 128 n n 
C4' O4' G5A sing 129 n n 
C4' H4' G5A sing 130 n n 
O4' C1' G5A sing 131 n n 
C5' C4' G5A sing 132 n n 
C5' H5' G5A sing 133 n n 
C5' "H5'A" G5A sing 134 n n 
O5' C5' G5A sing 135 n n 
C3' H16 G5A sing 136 n n 
O3' H17 G5A sing 137 n n 
#
_atom_sites.entry_id                     8U2P 
_atom_sites.fract_transf_matrix[1][1]    0.008046 
_atom_sites.fract_transf_matrix[1][2]    0.004645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 G5A A 1 501 501 G5A G5A . 
C 3 IMD A 1 502 501 IMD IMD . 
D 3 IMD A 1 503 502 IMD IMD . 
E 4 MES A 1 504 502 MES MES . 
F 5 EDO A 1 505 1 EDO EDO . 
G 5 EDO A 1 506 2 EDO EDO . 
H 5 EDO A 1 507 3 EDO EDO . 
I 6 MG A 1 508 1 MG MG . 
J 7 CL A 1 509 1 CL CL . 
K 7 CL A 1 510 3 CL CL . 
L 8 HOH A 1 601 127 HOH HOH . 
L 8 HOH A 2 602 117 HOH HOH . 
L 8 HOH A 3 603 10 HOH HOH . 
L 8 HOH A 4 604 100 HOH HOH . 
L 8 HOH A 5 605 61 HOH HOH . 
L 8 HOH A 6 606 109 HOH HOH . 
L 8 HOH A 7 607 104 HOH HOH . 
L 8 HOH A 8 608 68 HOH HOH . 
L 8 HOH A 9 609 53 HOH HOH . 
L 8 HOH A 10 610 12 HOH HOH . 
L 8 HOH A 11 611 34 HOH HOH . 
L 8 HOH A 12 612 54 HOH HOH . 
L 8 HOH A 13 613 118 HOH HOH . 
L 8 HOH A 14 614 85 HOH HOH . 
L 8 HOH A 15 615 66 HOH HOH . 
L 8 HOH A 16 616 62 HOH HOH . 
L 8 HOH A 17 617 31 HOH HOH . 
L 8 HOH A 18 618 83 HOH HOH . 
L 8 HOH A 19 619 57 HOH HOH . 
L 8 HOH A 20 620 126 HOH HOH . 
L 8 HOH A 21 621 48 HOH HOH . 
L 8 HOH A 22 622 84 HOH HOH . 
L 8 HOH A 23 623 4 HOH HOH . 
L 8 HOH A 24 624 105 HOH HOH . 
L 8 HOH A 25 625 59 HOH HOH . 
L 8 HOH A 26 626 79 HOH HOH . 
L 8 HOH A 27 627 71 HOH HOH . 
L 8 HOH A 28 628 56 HOH HOH . 
L 8 HOH A 29 629 38 HOH HOH . 
L 8 HOH A 30 630 5 HOH HOH . 
L 8 HOH A 31 631 37 HOH HOH . 
L 8 HOH A 32 632 35 HOH HOH . 
L 8 HOH A 33 633 55 HOH HOH . 
L 8 HOH A 34 634 112 HOH HOH . 
L 8 HOH A 35 635 25 HOH HOH . 
L 8 HOH A 36 636 39 HOH HOH . 
L 8 HOH A 37 637 67 HOH HOH . 
L 8 HOH A 38 638 107 HOH HOH . 
L 8 HOH A 39 639 102 HOH HOH . 
L 8 HOH A 40 640 14 HOH HOH . 
L 8 HOH A 41 641 23 HOH HOH . 
L 8 HOH A 42 642 58 HOH HOH . 
L 8 HOH A 43 643 33 HOH HOH . 
L 8 HOH A 44 644 89 HOH HOH . 
L 8 HOH A 45 645 94 HOH HOH . 
L 8 HOH A 46 646 32 HOH HOH . 
L 8 HOH A 47 647 43 HOH HOH . 
L 8 HOH A 48 648 86 HOH HOH . 
L 8 HOH A 49 649 36 HOH HOH . 
L 8 HOH A 50 650 98 HOH HOH . 
L 8 HOH A 51 651 99 HOH HOH . 
L 8 HOH A 52 652 19 HOH HOH . 
L 8 HOH A 53 653 9 HOH HOH . 
L 8 HOH A 54 654 42 HOH HOH . 
L 8 HOH A 55 655 82 HOH HOH . 
L 8 HOH A 56 656 15 HOH HOH . 
L 8 HOH A 57 657 75 HOH HOH . 
L 8 HOH A 58 658 52 HOH HOH . 
L 8 HOH A 59 659 16 HOH HOH . 
L 8 HOH A 60 660 87 HOH HOH . 
L 8 HOH A 61 661 97 HOH HOH . 
L 8 HOH A 62 662 41 HOH HOH . 
L 8 HOH A 63 663 3 HOH HOH . 
L 8 HOH A 64 664 26 HOH HOH . 
L 8 HOH A 65 665 7 HOH HOH . 
L 8 HOH A 66 666 101 HOH HOH . 
L 8 HOH A 67 667 103 HOH HOH . 
L 8 HOH A 68 668 81 HOH HOH . 
L 8 HOH A 69 669 51 HOH HOH . 
L 8 HOH A 70 670 69 HOH HOH . 
L 8 HOH A 71 671 77 HOH HOH . 
L 8 HOH A 72 672 17 HOH HOH . 
L 8 HOH A 73 673 63 HOH HOH . 
L 8 HOH A 74 674 44 HOH HOH . 
L 8 HOH A 75 675 111 HOH HOH . 
L 8 HOH A 76 676 113 HOH HOH . 
L 8 HOH A 77 677 1 HOH HOH . 
L 8 HOH A 78 678 96 HOH HOH . 
L 8 HOH A 79 679 45 HOH HOH . 
L 8 HOH A 80 680 90 HOH HOH . 
L 8 HOH A 81 681 18 HOH HOH . 
L 8 HOH A 82 682 49 HOH HOH . 
L 8 HOH A 83 683 11 HOH HOH . 
L 8 HOH A 84 684 21 HOH HOH . 
L 8 HOH A 85 685 119 HOH HOH . 
L 8 HOH A 86 686 30 HOH HOH . 
L 8 HOH A 87 687 93 HOH HOH . 
L 8 HOH A 88 688 108 HOH HOH . 
L 8 HOH A 89 689 24 HOH HOH . 
L 8 HOH A 90 690 73 HOH HOH . 
L 8 HOH A 91 691 92 HOH HOH . 
L 8 HOH A 92 692 6 HOH HOH . 
L 8 HOH A 93 693 29 HOH HOH . 
L 8 HOH A 94 694 115 HOH HOH . 
L 8 HOH A 95 695 65 HOH HOH . 
L 8 HOH A 96 696 13 HOH HOH . 
L 8 HOH A 97 697 114 HOH HOH . 
L 8 HOH A 98 698 80 HOH HOH . 
L 8 HOH A 99 699 28 HOH HOH . 
L 8 HOH A 100 700 22 HOH HOH . 
L 8 HOH A 101 701 2 HOH HOH . 
L 8 HOH A 102 702 8 HOH HOH . 
L 8 HOH A 103 703 110 HOH HOH . 
L 8 HOH A 104 704 106 HOH HOH . 
L 8 HOH A 105 705 122 HOH HOH . 
L 8 HOH A 106 706 128 HOH HOH . 
L 8 HOH A 107 707 78 HOH HOH . 
L 8 HOH A 108 708 20 HOH HOH . 
L 8 HOH A 109 709 46 HOH HOH . 
L 8 HOH A 110 710 121 HOH HOH . 
L 8 HOH A 111 711 60 HOH HOH . 
L 8 HOH A 112 712 124 HOH HOH . 
L 8 HOH A 113 713 27 HOH HOH . 
L 8 HOH A 114 714 74 HOH HOH . 
L 8 HOH A 115 715 40 HOH HOH . 
L 8 HOH A 116 716 50 HOH HOH . 
L 8 HOH A 117 717 116 HOH HOH . 
L 8 HOH A 118 718 47 HOH HOH . 
L 8 HOH A 119 719 95 HOH HOH . 
L 8 HOH A 120 720 91 HOH HOH . 
L 8 HOH A 121 721 120 HOH HOH . 
L 8 HOH A 122 722 76 HOH HOH . 
L 8 HOH A 123 723 64 HOH HOH . 
L 8 HOH A 124 724 125 HOH HOH . 
L 8 HOH A 125 725 123 HOH HOH . 
L 8 HOH A 126 726 72 HOH HOH . 
L 8 HOH A 127 727 88 HOH HOH . 
L 8 HOH A 128 728 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C G5A . . . B 2 33.218 30.838 -2.132 1 44.64 ? C G5A 501 A 1 
HETATM 2 N N G5A . . . B 2 33.054 32.303 -0.277 1 43.98 ? N G5A 501 A 1 
HETATM 3 O O G5A . . . B 2 33.127 29.867 -1.418 1 37.94 ? O G5A 501 A 1 
HETATM 4 S S G5A . . . B 2 33.718 29.252 -4.196 1 41.46 ? S G5A 501 A 1 
HETATM 5 N N1 G5A . . . B 2 37.364 21.246 -2.919 1 39.18 ? N1 G5A 501 A 1 
HETATM 6 C C2 G5A . . . B 2 38.438 22.03 -2.902 1 42.23 ? C2 G5A 501 A 1 
HETATM 7 N N3 G5A . . . B 2 38.501 23.341 -3.049 1 42.29 ? N3 G5A 501 A 1 
HETATM 8 C C4 G5A . . . B 2 37.296 23.872 -3.232 1 43.13 ? C4 G5A 501 A 1 
HETATM 9 C C5 G5A . . . B 2 36.092 23.19 -3.272 1 37.74 ? C5 G5A 501 A 1 
HETATM 10 C C6 G5A . . . B 2 36.159 21.795 -3.103 1 40.68 ? C6 G5A 501 A 1 
HETATM 11 N N6 G5A . . . B 2 35.079 21.014 -3.115 1 41.76 ? N6 G5A 501 A 1 
HETATM 12 N N7 G5A . . . B 2 35.049 24.055 -3.476 1 42.47 ? N7 G5A 501 A 1 
HETATM 13 C C8 G5A . . . B 2 35.606 25.224 -3.556 1 41.36 ? C8 G5A 501 A 1 
HETATM 14 N N9 G5A . . . B 2 36.97 25.188 -3.417 1 43.37 ? N9 G5A 501 A 1 
HETATM 15 C CA G5A . . . B 2 33.048 32.263 -1.689 1 42.61 ? CA G5A 501 A 1 
HETATM 16 C C1' G5A . . . B 2 37.899 26.284 -3.447 1 41.35 ? C1' G5A 501 A 1 
HETATM 17 O O1S G5A . . . B 2 34.032 29.592 -5.561 1 48.42 ? O1S G5A 501 A 1 
HETATM 18 C C2' G5A . . . B 2 38.289 26.772 -4.841 1 37.84 ? C2' G5A 501 A 1 
HETATM 19 O O2' G5A . . . B 2 39.652 27.074 -4.87 1 43.91 ? O2' G5A 501 A 1 
HETATM 20 O O2S G5A . . . B 2 32.633 28.38 -3.859 1 41.7 ? O2S G5A 501 A 1 
HETATM 21 C C3' G5A . . . B 2 37.37 27.984 -5.034 1 46 ? C3' G5A 501 A 1 
HETATM 22 O O3' G5A . . . B 2 37.95 28.933 -5.89 1 43.04 ? O3' G5A 501 A 1 
HETATM 23 N N3S G5A . . . B 2 33.496 30.722 -3.47 1 38.1 ? N3S G5A 501 A 1 
HETATM 24 C C4' G5A . . . B 2 37.362 28.538 -3.61 1 42.35 ? C4' G5A 501 A 1 
HETATM 25 O O4' G5A . . . B 2 37.335 27.387 -2.774 1 39.04 ? O4' G5A 501 A 1 
HETATM 26 C C5' G5A . . . B 2 36.169 29.431 -3.351 1 41.08 ? C5' G5A 501 A 1 
HETATM 27 O O5' G5A . . . B 2 34.974 28.635 -3.455 1 38.86 ? O5' G5A 501 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           59 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#