data_8U2P
#
_model_server_result.job_id            i-vy5GzUYiKpePXKY3zfGQ 
_model_server_result.datetime_utc      '2024-11-30 04:31:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u2p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8U2P 
#
_exptl.entry_id    8U2P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8U2P 
_cell.length_a            124.293 
_cell.length_b            124.293 
_cell.length_c            131.383 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U2P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 21.897167 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 297 A GLU 282 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc2 A OE2 GLU 297 A GLU 282 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc3 B O1S G5A . A G5A 501 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 H O1 EDO . A EDO 507 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc5 I MG MG . A MG 508 1_555 L O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc6 I MG MG . A MG 508 1_555 L O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc7 I MG MG . A MG 508 1_555 L O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 228 n y 
N1 C5 IMD sing 229 n y 
N1 HN1 IMD sing 230 n n 
C2 N3 IMD doub 231 n y 
C2 H2 IMD sing 232 n n 
N3 C4 IMD sing 233 n y 
N3 HN3 IMD sing 234 n n 
C4 C5 IMD doub 235 n y 
C4 H4 IMD sing 236 n n 
C5 H5 IMD sing 237 n n 
#
_atom_sites.entry_id                     8U2P 
_atom_sites.fract_transf_matrix[1][1]    0.008046 
_atom_sites.fract_transf_matrix[1][2]    0.004645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 G5A A 1 501 501 G5A G5A . 
C 3 IMD A 1 502 501 IMD IMD . 
D 3 IMD A 1 503 502 IMD IMD . 
E 4 MES A 1 504 502 MES MES . 
F 5 EDO A 1 505 1 EDO EDO . 
G 5 EDO A 1 506 2 EDO EDO . 
H 5 EDO A 1 507 3 EDO EDO . 
I 6 MG A 1 508 1 MG MG . 
J 7 CL A 1 509 1 CL CL . 
K 7 CL A 1 510 3 CL CL . 
L 8 HOH A 1 601 127 HOH HOH . 
L 8 HOH A 2 602 117 HOH HOH . 
L 8 HOH A 3 603 10 HOH HOH . 
L 8 HOH A 4 604 100 HOH HOH . 
L 8 HOH A 5 605 61 HOH HOH . 
L 8 HOH A 6 606 109 HOH HOH . 
L 8 HOH A 7 607 104 HOH HOH . 
L 8 HOH A 8 608 68 HOH HOH . 
L 8 HOH A 9 609 53 HOH HOH . 
L 8 HOH A 10 610 12 HOH HOH . 
L 8 HOH A 11 611 34 HOH HOH . 
L 8 HOH A 12 612 54 HOH HOH . 
L 8 HOH A 13 613 118 HOH HOH . 
L 8 HOH A 14 614 85 HOH HOH . 
L 8 HOH A 15 615 66 HOH HOH . 
L 8 HOH A 16 616 62 HOH HOH . 
L 8 HOH A 17 617 31 HOH HOH . 
L 8 HOH A 18 618 83 HOH HOH . 
L 8 HOH A 19 619 57 HOH HOH . 
L 8 HOH A 20 620 126 HOH HOH . 
L 8 HOH A 21 621 48 HOH HOH . 
L 8 HOH A 22 622 84 HOH HOH . 
L 8 HOH A 23 623 4 HOH HOH . 
L 8 HOH A 24 624 105 HOH HOH . 
L 8 HOH A 25 625 59 HOH HOH . 
L 8 HOH A 26 626 79 HOH HOH . 
L 8 HOH A 27 627 71 HOH HOH . 
L 8 HOH A 28 628 56 HOH HOH . 
L 8 HOH A 29 629 38 HOH HOH . 
L 8 HOH A 30 630 5 HOH HOH . 
L 8 HOH A 31 631 37 HOH HOH . 
L 8 HOH A 32 632 35 HOH HOH . 
L 8 HOH A 33 633 55 HOH HOH . 
L 8 HOH A 34 634 112 HOH HOH . 
L 8 HOH A 35 635 25 HOH HOH . 
L 8 HOH A 36 636 39 HOH HOH . 
L 8 HOH A 37 637 67 HOH HOH . 
L 8 HOH A 38 638 107 HOH HOH . 
L 8 HOH A 39 639 102 HOH HOH . 
L 8 HOH A 40 640 14 HOH HOH . 
L 8 HOH A 41 641 23 HOH HOH . 
L 8 HOH A 42 642 58 HOH HOH . 
L 8 HOH A 43 643 33 HOH HOH . 
L 8 HOH A 44 644 89 HOH HOH . 
L 8 HOH A 45 645 94 HOH HOH . 
L 8 HOH A 46 646 32 HOH HOH . 
L 8 HOH A 47 647 43 HOH HOH . 
L 8 HOH A 48 648 86 HOH HOH . 
L 8 HOH A 49 649 36 HOH HOH . 
L 8 HOH A 50 650 98 HOH HOH . 
L 8 HOH A 51 651 99 HOH HOH . 
L 8 HOH A 52 652 19 HOH HOH . 
L 8 HOH A 53 653 9 HOH HOH . 
L 8 HOH A 54 654 42 HOH HOH . 
L 8 HOH A 55 655 82 HOH HOH . 
L 8 HOH A 56 656 15 HOH HOH . 
L 8 HOH A 57 657 75 HOH HOH . 
L 8 HOH A 58 658 52 HOH HOH . 
L 8 HOH A 59 659 16 HOH HOH . 
L 8 HOH A 60 660 87 HOH HOH . 
L 8 HOH A 61 661 97 HOH HOH . 
L 8 HOH A 62 662 41 HOH HOH . 
L 8 HOH A 63 663 3 HOH HOH . 
L 8 HOH A 64 664 26 HOH HOH . 
L 8 HOH A 65 665 7 HOH HOH . 
L 8 HOH A 66 666 101 HOH HOH . 
L 8 HOH A 67 667 103 HOH HOH . 
L 8 HOH A 68 668 81 HOH HOH . 
L 8 HOH A 69 669 51 HOH HOH . 
L 8 HOH A 70 670 69 HOH HOH . 
L 8 HOH A 71 671 77 HOH HOH . 
L 8 HOH A 72 672 17 HOH HOH . 
L 8 HOH A 73 673 63 HOH HOH . 
L 8 HOH A 74 674 44 HOH HOH . 
L 8 HOH A 75 675 111 HOH HOH . 
L 8 HOH A 76 676 113 HOH HOH . 
L 8 HOH A 77 677 1 HOH HOH . 
L 8 HOH A 78 678 96 HOH HOH . 
L 8 HOH A 79 679 45 HOH HOH . 
L 8 HOH A 80 680 90 HOH HOH . 
L 8 HOH A 81 681 18 HOH HOH . 
L 8 HOH A 82 682 49 HOH HOH . 
L 8 HOH A 83 683 11 HOH HOH . 
L 8 HOH A 84 684 21 HOH HOH . 
L 8 HOH A 85 685 119 HOH HOH . 
L 8 HOH A 86 686 30 HOH HOH . 
L 8 HOH A 87 687 93 HOH HOH . 
L 8 HOH A 88 688 108 HOH HOH . 
L 8 HOH A 89 689 24 HOH HOH . 
L 8 HOH A 90 690 73 HOH HOH . 
L 8 HOH A 91 691 92 HOH HOH . 
L 8 HOH A 92 692 6 HOH HOH . 
L 8 HOH A 93 693 29 HOH HOH . 
L 8 HOH A 94 694 115 HOH HOH . 
L 8 HOH A 95 695 65 HOH HOH . 
L 8 HOH A 96 696 13 HOH HOH . 
L 8 HOH A 97 697 114 HOH HOH . 
L 8 HOH A 98 698 80 HOH HOH . 
L 8 HOH A 99 699 28 HOH HOH . 
L 8 HOH A 100 700 22 HOH HOH . 
L 8 HOH A 101 701 2 HOH HOH . 
L 8 HOH A 102 702 8 HOH HOH . 
L 8 HOH A 103 703 110 HOH HOH . 
L 8 HOH A 104 704 106 HOH HOH . 
L 8 HOH A 105 705 122 HOH HOH . 
L 8 HOH A 106 706 128 HOH HOH . 
L 8 HOH A 107 707 78 HOH HOH . 
L 8 HOH A 108 708 20 HOH HOH . 
L 8 HOH A 109 709 46 HOH HOH . 
L 8 HOH A 110 710 121 HOH HOH . 
L 8 HOH A 111 711 60 HOH HOH . 
L 8 HOH A 112 712 124 HOH HOH . 
L 8 HOH A 113 713 27 HOH HOH . 
L 8 HOH A 114 714 74 HOH HOH . 
L 8 HOH A 115 715 40 HOH HOH . 
L 8 HOH A 116 716 50 HOH HOH . 
L 8 HOH A 117 717 116 HOH HOH . 
L 8 HOH A 118 718 47 HOH HOH . 
L 8 HOH A 119 719 95 HOH HOH . 
L 8 HOH A 120 720 91 HOH HOH . 
L 8 HOH A 121 721 120 HOH HOH . 
L 8 HOH A 122 722 76 HOH HOH . 
L 8 HOH A 123 723 64 HOH HOH . 
L 8 HOH A 124 724 125 HOH HOH . 
L 8 HOH A 125 725 123 HOH HOH . 
L 8 HOH A 126 726 72 HOH HOH . 
L 8 HOH A 127 727 88 HOH HOH . 
L 8 HOH A 128 728 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . C 3 53.759 5.357 1.725 1 57.65 ? N1 IMD 502 A 1 
HETATM 2 C C2 IMD . . . C 3 52.617 5.982 1.495 1 74.42 ? C2 IMD 502 A 1 
HETATM 3 N N3 IMD . . . C 3 52.769 6.702 0.399 1 71.45 ? N3 IMD 502 A 1 
HETATM 4 C C4 IMD . . . C 3 54.037 6.538 -0.089 1 67.19 ? C4 IMD 502 A 1 
HETATM 5 C C5 IMD . . . C 3 54.667 5.684 0.755 1 65.9 ? C5 IMD 502 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           5 
#