data_8U2Q
#
_model_server_result.job_id            owVXEiUtm4xPHiMRkypO3g 
_model_server_result.datetime_utc      '2024-10-19 17:35:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u2q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":504}' 
#
_entry.id    8U2Q 
#
_exptl.entry_id    8U2Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              403.371 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(glycylsulfamoyl)adenosine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.12 
_cell.angle_gamma         90 
_cell.entry_id            8U2Q 
_cell.length_a            171.286 
_cell.length_b            87.388 
_cell.length_c            99.152 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U2Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O VAL 74 A VAL 54 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 A O ARG 77 A ARG 57 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A O VAL 80 A VAL 60 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc4 B O VAL 74 B VAL 54 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc5 B O ARG 77 B ARG 57 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc6 B O VAL 80 B VAL 60 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc7 B SG CYS 110 B CYS 90 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc8 B SG CYS 113 B CYS 93 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc9 B SG CYS 143 B CYS 125 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc10 B SG CYS 146 B CYS 128 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
#
_chem_comp.formula           'C12 H17 N7 O7 S' 
_chem_comp.formula_weight    403.371 
_chem_comp.id                G5A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(glycylsulfamoyl)adenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N3S G5A sing 92 n n 
N CA G5A sing 93 n n 
N HN G5A sing 94 n n 
N HNA G5A sing 95 n n 
O C G5A doub 96 n n 
S O5' G5A sing 97 n n 
S O2S G5A doub 98 n n 
N1 C2 G5A sing 99 n y 
C2 H2 G5A sing 100 n n 
N3 C2 G5A doub 101 n y 
C4 N3 G5A sing 102 n y 
C5 C4 G5A doub 103 n y 
C5 C6 G5A sing 104 n y 
C6 N1 G5A doub 105 n y 
N6 C6 G5A sing 106 n n 
N6 HN6 G5A sing 107 n n 
N6 HN6A G5A sing 108 n n 
N7 C5 G5A sing 109 n y 
N7 C8 G5A doub 110 n y 
C8 N9 G5A sing 111 n y 
C8 H8 G5A sing 112 n n 
N9 C4 G5A sing 113 n y 
N9 C1' G5A sing 114 n n 
CA C G5A sing 115 n n 
CA HA G5A sing 116 n n 
CA HAA G5A sing 117 n n 
C1' C2' G5A sing 118 n n 
C1' H1' G5A sing 119 n n 
O1S S G5A doub 120 n n 
C2' O2' G5A sing 121 n n 
C2' H2' G5A sing 122 n n 
O2' HO2' G5A sing 123 n n 
C3' C2' G5A sing 124 n n 
C3' O3' G5A sing 125 n n 
N3S S G5A sing 126 n n 
N3S HN3S G5A sing 127 n n 
C4' C3' G5A sing 128 n n 
C4' O4' G5A sing 129 n n 
C4' H4' G5A sing 130 n n 
O4' C1' G5A sing 131 n n 
C5' C4' G5A sing 132 n n 
C5' H5' G5A sing 133 n n 
C5' "H5'A" G5A sing 134 n n 
O5' C5' G5A sing 135 n n 
C3' H16 G5A sing 136 n n 
O3' H17 G5A sing 137 n n 
#
_atom_sites.entry_id                     8U2Q 
_atom_sites.fract_transf_matrix[1][1]    0.005838 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001469 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0104 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 501 2 NA NA . 
D 3 CL A 1 502 2 CL CL . 
E 4 EDO A 1 503 501 EDO EDO . 
F 5 G5A A 1 504 1 G5A G5A . 
G 2 NA B 1 501 1 NA NA . 
H 6 ZN B 1 502 1 ZN ZN . 
I 3 CL B 1 503 1 CL CL . 
J 5 G5A B 1 504 2 G5A G5A . 
K 7 HOH A 1 601 105 HOH HOH . 
K 7 HOH A 2 602 1 HOH HOH . 
K 7 HOH A 3 603 25 HOH HOH . 
K 7 HOH A 4 604 58 HOH HOH . 
K 7 HOH A 5 605 3 HOH HOH . 
K 7 HOH A 6 606 61 HOH HOH . 
K 7 HOH A 7 607 48 HOH HOH . 
K 7 HOH A 8 608 75 HOH HOH . 
K 7 HOH A 9 609 30 HOH HOH . 
K 7 HOH A 10 610 91 HOH HOH . 
K 7 HOH A 11 611 32 HOH HOH . 
K 7 HOH A 12 612 5 HOH HOH . 
K 7 HOH A 13 613 102 HOH HOH . 
K 7 HOH A 14 614 92 HOH HOH . 
K 7 HOH A 15 615 50 HOH HOH . 
K 7 HOH A 16 616 55 HOH HOH . 
K 7 HOH A 17 617 44 HOH HOH . 
K 7 HOH A 18 618 47 HOH HOH . 
K 7 HOH A 19 619 27 HOH HOH . 
K 7 HOH A 20 620 54 HOH HOH . 
K 7 HOH A 21 621 94 HOH HOH . 
K 7 HOH A 22 622 14 HOH HOH . 
K 7 HOH A 23 623 96 HOH HOH . 
K 7 HOH A 24 624 52 HOH HOH . 
K 7 HOH A 25 625 11 HOH HOH . 
K 7 HOH A 26 626 16 HOH HOH . 
K 7 HOH A 27 627 42 HOH HOH . 
K 7 HOH A 28 628 100 HOH HOH . 
K 7 HOH A 29 629 103 HOH HOH . 
K 7 HOH A 30 630 106 HOH HOH . 
K 7 HOH A 31 631 13 HOH HOH . 
K 7 HOH A 32 632 31 HOH HOH . 
K 7 HOH A 33 633 22 HOH HOH . 
K 7 HOH A 34 634 74 HOH HOH . 
K 7 HOH A 35 635 63 HOH HOH . 
K 7 HOH A 36 636 15 HOH HOH . 
K 7 HOH A 37 637 84 HOH HOH . 
K 7 HOH A 38 638 24 HOH HOH . 
K 7 HOH A 39 639 88 HOH HOH . 
K 7 HOH A 40 640 46 HOH HOH . 
K 7 HOH A 41 641 93 HOH HOH . 
K 7 HOH A 42 642 62 HOH HOH . 
K 7 HOH A 43 643 69 HOH HOH . 
K 7 HOH A 44 644 7 HOH HOH . 
K 7 HOH A 45 645 71 HOH HOH . 
K 7 HOH A 46 646 12 HOH HOH . 
K 7 HOH A 47 647 2 HOH HOH . 
K 7 HOH A 48 648 107 HOH HOH . 
K 7 HOH A 49 649 19 HOH HOH . 
K 7 HOH A 50 650 23 HOH HOH . 
K 7 HOH A 51 651 77 HOH HOH . 
K 7 HOH A 52 652 90 HOH HOH . 
K 7 HOH A 53 653 33 HOH HOH . 
K 7 HOH A 54 654 83 HOH HOH . 
K 7 HOH A 55 655 37 HOH HOH . 
K 7 HOH A 56 656 99 HOH HOH . 
L 7 HOH B 1 601 80 HOH HOH . 
L 7 HOH B 2 602 38 HOH HOH . 
L 7 HOH B 3 603 79 HOH HOH . 
L 7 HOH B 4 604 6 HOH HOH . 
L 7 HOH B 5 605 41 HOH HOH . 
L 7 HOH B 6 606 104 HOH HOH . 
L 7 HOH B 7 607 45 HOH HOH . 
L 7 HOH B 8 608 57 HOH HOH . 
L 7 HOH B 9 609 101 HOH HOH . 
L 7 HOH B 10 610 43 HOH HOH . 
L 7 HOH B 11 611 89 HOH HOH . 
L 7 HOH B 12 612 59 HOH HOH . 
L 7 HOH B 13 613 76 HOH HOH . 
L 7 HOH B 14 614 53 HOH HOH . 
L 7 HOH B 15 615 82 HOH HOH . 
L 7 HOH B 16 616 97 HOH HOH . 
L 7 HOH B 17 617 87 HOH HOH . 
L 7 HOH B 18 618 26 HOH HOH . 
L 7 HOH B 19 619 86 HOH HOH . 
L 7 HOH B 20 620 8 HOH HOH . 
L 7 HOH B 21 621 28 HOH HOH . 
L 7 HOH B 22 622 49 HOH HOH . 
L 7 HOH B 23 623 51 HOH HOH . 
L 7 HOH B 24 624 78 HOH HOH . 
L 7 HOH B 25 625 66 HOH HOH . 
L 7 HOH B 26 626 56 HOH HOH . 
L 7 HOH B 27 627 67 HOH HOH . 
L 7 HOH B 28 628 73 HOH HOH . 
L 7 HOH B 29 629 29 HOH HOH . 
L 7 HOH B 30 630 68 HOH HOH . 
L 7 HOH B 31 631 81 HOH HOH . 
L 7 HOH B 32 632 72 HOH HOH . 
L 7 HOH B 33 633 39 HOH HOH . 
L 7 HOH B 34 634 21 HOH HOH . 
L 7 HOH B 35 635 4 HOH HOH . 
L 7 HOH B 36 636 60 HOH HOH . 
L 7 HOH B 37 637 65 HOH HOH . 
L 7 HOH B 38 638 98 HOH HOH . 
L 7 HOH B 39 639 95 HOH HOH . 
L 7 HOH B 40 640 36 HOH HOH . 
L 7 HOH B 41 641 10 HOH HOH . 
L 7 HOH B 42 642 70 HOH HOH . 
L 7 HOH B 43 643 85 HOH HOH . 
L 7 HOH B 44 644 17 HOH HOH . 
L 7 HOH B 45 645 20 HOH HOH . 
L 7 HOH B 46 646 35 HOH HOH . 
L 7 HOH B 47 647 9 HOH HOH . 
L 7 HOH B 48 648 40 HOH HOH . 
L 7 HOH B 49 649 18 HOH HOH . 
L 7 HOH B 50 650 64 HOH HOH . 
L 7 HOH B 51 651 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C G5A . . . J 5 -38.772 39.967 29.09 1 58.11 ? C G5A 504 B 1 
HETATM 2 N N G5A . . . J 5 -36.672 38.894 29.535 1 53 ? N G5A 504 B 1 
HETATM 3 O O G5A . . . J 5 -38.883 39.442 28.009 1 49.74 ? O G5A 504 B 1 
HETATM 4 S S G5A . . . J 5 -40.746 41.672 28.481 1 54.72 ? S G5A 504 B 1 
HETATM 5 N N1 G5A . . . J 5 -42.17 44.6 20.202 1 55.19 ? N1 G5A 504 B 1 
HETATM 6 C C2 G5A . . . J 5 -41.326 45.517 20.672 1 56.6 ? C2 G5A 504 B 1 
HETATM 7 N N3 G5A . . . J 5 -40.752 45.569 21.863 1 55.43 ? N3 G5A 504 B 1 
HETATM 8 C C4 G5A . . . J 5 -41.113 44.541 22.629 1 56.84 ? C4 G5A 504 B 1 
HETATM 9 C C5 G5A . . . J 5 -41.974 43.514 22.282 1 57.1 ? C5 G5A 504 B 1 
HETATM 10 C C6 G5A . . . J 5 -42.519 43.572 20.986 1 56.38 ? C6 G5A 504 B 1 
HETATM 11 N N6 G5A . . . J 5 -43.36 42.65 20.522 1 56.11 ? N6 G5A 504 B 1 
HETATM 12 N N7 G5A . . . J 5 -42.115 42.623 23.316 1 53.08 ? N7 G5A 504 B 1 
HETATM 13 C C8 G5A . . . J 5 -41.361 43.096 24.26 1 54.62 ? C8 G5A 504 B 1 
HETATM 14 N N9 G5A . . . J 5 -40.724 44.259 23.909 1 56.82 ? N9 G5A 504 B 1 
HETATM 15 C CA G5A . . . J 5 -37.779 39.547 30.144 1 53.11 ? CA G5A 504 B 1 
HETATM 16 C C1' G5A . . . J 5 -39.819 45.051 24.691 1 54.07 ? C1' G5A 504 B 1 
HETATM 17 O O1S G5A . . . J 5 -41.398 40.512 27.931 1 59.24 ? O1S G5A 504 B 1 
HETATM 18 C C2' G5A . . . J 5 -40.492 46.042 25.634 1 53.12 ? C2' G5A 504 B 1 
HETATM 19 O O2' G5A . . . J 5 -39.774 47.236 25.595 1 56.47 ? O2' G5A 504 B 1 
HETATM 20 O O2S G5A . . . J 5 -41.486 42.714 29.144 1 48.12 ? O2S G5A 504 B 1 
HETATM 21 C C3' G5A . . . J 5 -40.453 45.295 26.976 1 56.59 ? C3' G5A 504 B 1 
HETATM 22 O O3' G5A . . . J 5 -40.427 46.181 28.062 1 51.74 ? O3' G5A 504 B 1 
HETATM 23 N N3S G5A . . . J 5 -39.571 41.028 29.464 1 57.73 ? N3S G5A 504 B 1 
HETATM 24 C C4' G5A . . . J 5 -39.096 44.611 26.852 1 53.03 ? C4' G5A 504 B 1 
HETATM 25 O O4' G5A . . . J 5 -39.015 44.214 25.488 1 58.6 ? O4' G5A 504 B 1 
HETATM 26 C C5' G5A . . . J 5 -38.96 43.415 27.767 1 60.01 ? C5' G5A 504 B 1 
HETATM 27 O O5' G5A . . . J 5 -39.926 42.433 27.359 1 58.51 ? O5' G5A 504 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#