data_8U31 # _model_server_result.job_id 1PErMmu-xaTvUB8nhVh7oA _model_server_result.datetime_utc '2024-11-22 07:10:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8U31 # _exptl.entry_id 8U31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U31 _cell.length_a 44.069 _cell.length_b 104.069 _cell.length_c 143.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 54 1_555 A SG CYS 114 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 138 B CYS 138 1_555 B SG CYS 198 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 22 C CYS 22 1_555 C SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 36 C CYS 36 1_555 C SG CYS 51 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 C SG CYS 154 C CYS 154 1_555 C SG CYS 210 C CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8U31 _atom_sites.fract_transf_matrix[1][1] 0.022692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL B 1 301 301 GOL GOL . E 5 HOH B 1 401 48 HOH HOH . E 5 HOH B 2 402 21 HOH HOH . E 5 HOH B 3 403 22 HOH HOH . E 5 HOH B 4 404 23 HOH HOH . E 5 HOH B 5 405 7 HOH HOH . E 5 HOH B 6 406 53 HOH HOH . E 5 HOH B 7 407 16 HOH HOH . E 5 HOH B 8 408 13 HOH HOH . E 5 HOH B 9 409 18 HOH HOH . E 5 HOH B 10 410 20 HOH HOH . E 5 HOH B 11 411 33 HOH HOH . E 5 HOH B 12 412 19 HOH HOH . E 5 HOH B 13 413 31 HOH HOH . E 5 HOH B 14 414 27 HOH HOH . E 5 HOH B 15 415 12 HOH HOH . E 5 HOH B 16 416 51 HOH HOH . E 5 HOH B 17 417 1 HOH HOH . E 5 HOH B 18 418 61 HOH HOH . E 5 HOH B 19 419 39 HOH HOH . E 5 HOH B 20 420 41 HOH HOH . E 5 HOH B 21 421 43 HOH HOH . E 5 HOH B 22 422 26 HOH HOH . E 5 HOH B 23 423 50 HOH HOH . E 5 HOH B 24 424 58 HOH HOH . E 5 HOH B 25 425 38 HOH HOH . F 5 HOH C 1 301 9 HOH HOH . F 5 HOH C 2 302 24 HOH HOH . F 5 HOH C 3 303 14 HOH HOH . F 5 HOH C 4 304 29 HOH HOH . F 5 HOH C 5 305 49 HOH HOH . F 5 HOH C 6 306 5 HOH HOH . F 5 HOH C 7 307 59 HOH HOH . F 5 HOH C 8 308 52 HOH HOH . F 5 HOH C 9 309 3 HOH HOH . F 5 HOH C 10 310 36 HOH HOH . F 5 HOH C 11 311 11 HOH HOH . F 5 HOH C 12 312 2 HOH HOH . F 5 HOH C 13 313 4 HOH HOH . F 5 HOH C 14 314 42 HOH HOH . F 5 HOH C 15 315 8 HOH HOH . F 5 HOH C 16 316 28 HOH HOH . F 5 HOH C 17 317 32 HOH HOH . F 5 HOH C 18 318 35 HOH HOH . F 5 HOH C 19 319 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -13.762 72.134 46.575 1 59.41 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . D 4 -13.71 72.304 47.977 1 55 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . D 4 -12.654 71.099 46.149 1 59.01 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . D 4 -13.053 69.754 46.275 1 44.66 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . D 4 -12.312 71.484 44.691 1 52.89 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . D 4 -11.439 72.563 44.762 1 51.09 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #