data_8U37 # _model_server_result.job_id c0dTIoHlYgp2dTApWQFCVA _model_server_result.datetime_utc '2024-10-10 13:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8U37 # _exptl.entry_id 8U37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.465 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-3-amino-N-{4-[(3R,4S)-4-amino-3-methoxypiperidin-1-yl]pyridin-3-yl}-6-[3-(trifluoromethoxy)pyridin-2-yl]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.62 _cell.angle_gamma 90 _cell.entry_id 8U37 _cell.length_a 107.851 _cell.length_b 44.41 _cell.length_c 84.789 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 178 A ARG 496 1_555 A N TPO 179 A TPO 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C TPO 179 A TPO 497 1_555 A N PHE 180 A PHE 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LEU 319 A LEU 637 1_555 A N TPO 320 A TPO 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C TPO 320 A TPO 638 1_555 A N PRO 321 A PRO 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? metalc ? metalc1 A O1P TPO 179 A TPO 497 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C22 H23 F3 N8 O3' _chem_comp.formula_weight 504.465 _chem_comp.id V5U _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-3-amino-N-{4-[(3R,4S)-4-amino-3-methoxypiperidin-1-yl]pyridin-3-yl}-6-[3-(trifluoromethoxy)pyridin-2-yl]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 V5U doub 379 n y C1 C5 V5U sing 380 n y C2 N1 V5U sing 381 n y N1 C3 V5U doub 382 n y C3 C4 V5U sing 383 n y C5 C4 V5U doub 384 n y C4 N4 V5U sing 385 n n N2 C5 V5U sing 386 n n N2 C6 V5U sing 387 n n C10 N2 V5U sing 388 n n C6 C7 V5U sing 389 n n C7 C8 V5U sing 390 n n C8 C9 V5U sing 391 n n N3 C8 V5U sing 392 n n C9 C10 V5U sing 393 n n O1 C9 V5U sing 394 n n C11 O1 V5U sing 395 n n N4 C12 V5U sing 396 n n C13 C12 V5U sing 397 n n C12 O3 V5U doub 398 n n C13 C14 V5U doub 399 n y N6 C13 V5U sing 400 n y C14 N5 V5U sing 401 n y N8 C14 V5U sing 402 n n N5 C15 V5U doub 403 n y C15 C16 V5U sing 404 n y C16 N6 V5U doub 405 n y C17 C16 V5U sing 406 n n C17 C18 V5U doub 407 n y N7 C17 V5U sing 408 n y C18 C19 V5U sing 409 n y O2 C18 V5U sing 410 n n C19 C20 V5U doub 411 n y C20 C21 V5U sing 412 n y C21 N7 V5U doub 413 n y C22 O2 V5U sing 414 n n F1 C22 V5U sing 415 n n F2 C22 V5U sing 416 n n F3 C22 V5U sing 417 n n C1 H1 V5U sing 418 n n C2 H2 V5U sing 419 n n C3 H3 V5U sing 420 n n C11 H111 V5U sing 421 n n C11 H113 V5U sing 422 n n C11 H112 V5U sing 423 n n C15 H15 V5U sing 424 n n C19 H19 V5U sing 425 n n C20 H20 V5U sing 426 n n C21 H21 V5U sing 427 n n C10 H102 V5U sing 428 n n C10 H101 V5U sing 429 n n C6 H61 V5U sing 430 n n C6 H62 V5U sing 431 n n C7 H71 V5U sing 432 n n C7 H72 V5U sing 433 n n C8 H8 V5U sing 434 n n C9 H9 V5U sing 435 n n N3 H4 V5U sing 436 n n N3 HN31 V5U sing 437 n n N4 H5 V5U sing 438 n n N8 HN81 V5U sing 439 n n N8 HN82 V5U sing 440 n n # _atom_sites.entry_id 8U37 _atom_sites.fract_transf_matrix[1][1] 0.009272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004249 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V5U A 1 701 701 V5U LI1 . C 3 MG A 1 702 1 MG MG . D 4 HOH A 1 801 6 HOH HOH . D 4 HOH A 2 802 1 HOH HOH . D 4 HOH A 3 803 2 HOH HOH . D 4 HOH A 4 804 4 HOH HOH . D 4 HOH A 5 805 3 HOH HOH . D 4 HOH A 6 806 5 HOH HOH . D 4 HOH A 7 807 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 V5U . . . B 2 27.952 -3.583 10.336 1 59.03 ? C1 V5U 701 A 1 HETATM 2 C C2 V5U . . . B 2 28.459 -2.353 9.91 1 48.6 ? C2 V5U 701 A 1 HETATM 3 C C3 V5U . . . B 2 30.363 -2.594 11.173 1 56.87 ? C3 V5U 701 A 1 HETATM 4 O O1 V5U . . . B 2 25.907 -8.077 10.214 1 66.29 ? O1 V5U 701 A 1 HETATM 5 O O2 V5U . . . B 2 30.689 -8.234 11.628 1 64.59 ? O2 V5U 701 A 1 HETATM 6 O O3 V5U . . . B 2 31.455 -3.148 14.135 1 67.09 ? O3 V5U 701 A 1 HETATM 7 C C11 V5U . . . B 2 26.369 -8.844 9.112 1 65.02 ? C11 V5U 701 A 1 HETATM 8 C C12 V5U . . . B 2 31.457 -4.274 13.628 1 62.44 ? C12 V5U 701 A 1 HETATM 9 C C13 V5U . . . B 2 32.248 -5.477 14.129 1 62.96 ? C13 V5U 701 A 1 HETATM 10 C C14 V5U . . . B 2 33.296 -5.422 15.103 1 64.85 ? C14 V5U 701 A 1 HETATM 11 C C15 V5U . . . B 2 33.641 -7.697 14.907 1 64.69 ? C15 V5U 701 A 1 HETATM 12 C C16 V5U . . . B 2 32.624 -7.801 13.927 1 61.59 ? C16 V5U 701 A 1 HETATM 13 C C17 V5U . . . B 2 32.269 -9.11 13.3 1 67.06 ? C17 V5U 701 A 1 HETATM 14 C C18 V5U . . . B 2 31.353 -9.28 12.221 1 68.02 ? C18 V5U 701 A 1 HETATM 15 C C19 V5U . . . B 2 31.121 -10.58 11.723 1 66.07 ? C19 V5U 701 A 1 HETATM 16 C C20 V5U . . . B 2 31.782 -11.677 12.301 1 66.34 ? C20 V5U 701 A 1 HETATM 17 C C21 V5U . . . B 2 32.665 -11.428 13.362 1 64.14 ? C21 V5U 701 A 1 HETATM 18 C C22 V5U . . . B 2 31.228 -7.808 10.456 1 67.47 ? C22 V5U 701 A 1 HETATM 19 C C10 V5U . . . B 2 27.289 -6.194 10.71 1 59.66 ? C10 V5U 701 A 1 HETATM 20 C C4 V5U . . . B 2 29.934 -3.836 11.675 1 56.51 ? C4 V5U 701 A 1 HETATM 21 C C5 V5U . . . B 2 28.699 -4.357 11.236 1 58.03 ? C5 V5U 701 A 1 HETATM 22 C C6 V5U . . . B 2 27.772 -5.683 13.062 1 61.44 ? C6 V5U 701 A 1 HETATM 23 C C7 V5U . . . B 2 27.433 -7.12 13.495 1 56.7 ? C7 V5U 701 A 1 HETATM 24 C C8 V5U . . . B 2 26.481 -7.824 12.509 1 64.17 ? C8 V5U 701 A 1 HETATM 25 C C9 V5U . . . B 2 26.972 -7.661 11.052 1 64.22 ? C9 V5U 701 A 1 HETATM 26 F F1 V5U . . . B 2 30.753 -6.557 10.232 1 61.07 ? F1 V5U 701 A 1 HETATM 27 F F2 V5U . . . B 2 30.944 -8.596 9.373 1 64.05 ? F2 V5U 701 A 1 HETATM 28 F F3 V5U . . . B 2 32.58 -7.766 10.561 1 70.78 ? F3 V5U 701 A 1 HETATM 29 N N1 V5U . . . B 2 29.635 -1.859 10.32 1 60.03 ? N1 V5U 701 A 1 HETATM 30 N N2 V5U . . . B 2 28.214 -5.604 11.674 1 57.69 ? N2 V5U 701 A 1 HETATM 31 N N3 V5U . . . B 2 26.315 -9.255 12.862 1 70.25 ? N3 V5U 701 A 1 HETATM 32 N N4 V5U . . . B 2 30.757 -4.588 12.539 1 60.84 ? N4 V5U 701 A 1 HETATM 33 N N5 V5U . . . B 2 33.977 -6.524 15.488 1 65.98 ? N5 V5U 701 A 1 HETATM 34 N N6 V5U . . . B 2 31.95 -6.679 13.547 1 60.62 ? N6 V5U 701 A 1 HETATM 35 N N7 V5U . . . B 2 32.9 -10.189 13.843 1 70.85 ? N7 V5U 701 A 1 HETATM 36 N N8 V5U . . . B 2 33.718 -4.283 15.763 1 68.44 ? N8 V5U 701 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #