data_8U3C
#
_model_server_result.job_id            E1dm72cYseh8vKrC0BtlWA 
_model_server_result.datetime_utc      '2024-11-15 03:16:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":902}' 
#
_entry.id    8U3C 
#
_exptl.entry_id    8U3C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U3C 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 620 A GLY 643 1_555 F NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc2 F NA NA . A NA 904 1_555 G O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc3 F NA NA . A NA 904 1_555 B O GLY 620 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc4 F NA NA . A NA 904 1_555 H O HOH . D HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 361 n n 
C1 O3P PCW sing 362 n n 
C1 H11 PCW sing 363 n n 
C1 H12 PCW sing 364 n n 
C2 C3 PCW sing 365 n n 
C2 O2 PCW sing 366 n n 
C2 H2 PCW sing 367 n n 
C3 O3 PCW sing 368 n n 
C3 H31 PCW sing 369 n n 
C3 H32 PCW sing 370 n n 
C4 C5 PCW sing 371 n n 
C4 O4P PCW sing 372 n n 
C4 H41 PCW sing 373 n n 
C4 H42 PCW sing 374 n n 
C5 N PCW sing 375 n n 
C5 H51 PCW sing 376 n n 
C5 H52 PCW sing 377 n n 
C6 N PCW sing 378 n n 
C6 H61 PCW sing 379 n n 
C6 H62 PCW sing 380 n n 
C6 H63 PCW sing 381 n n 
C7 N PCW sing 382 n n 
C7 H71 PCW sing 383 n n 
C7 H72 PCW sing 384 n n 
C7 H73 PCW sing 385 n n 
C8 N PCW sing 386 n n 
C8 H81 PCW sing 387 n n 
C8 H82 PCW sing 388 n n 
C8 H83 PCW sing 389 n n 
C11 C12 PCW sing 390 n n 
C11 O3 PCW sing 391 n n 
C11 O11 PCW doub 392 n n 
C12 C13 PCW sing 393 n n 
C12 H121 PCW sing 394 n n 
C12 H122 PCW sing 395 n n 
C13 C14 PCW sing 396 n n 
C13 H131 PCW sing 397 n n 
C13 H132 PCW sing 398 n n 
C14 C15 PCW sing 399 n n 
C14 H141 PCW sing 400 n n 
C14 H142 PCW sing 401 n n 
C15 C16 PCW sing 402 n n 
C15 H151 PCW sing 403 n n 
C15 H152 PCW sing 404 n n 
C16 C17 PCW sing 405 n n 
C16 H161 PCW sing 406 n n 
C16 H162 PCW sing 407 n n 
C17 C18 PCW sing 408 n n 
C17 H171 PCW sing 409 n n 
C17 H172 PCW sing 410 n n 
C18 C19 PCW sing 411 n n 
C18 H181 PCW sing 412 n n 
C18 H182 PCW sing 413 n n 
C19 C20 PCW doub 414 z n 
C19 H19 PCW sing 415 n n 
C20 C21 PCW sing 416 n n 
C20 H20 PCW sing 417 n n 
C21 C22 PCW sing 418 n n 
C21 H211 PCW sing 419 n n 
C21 H212 PCW sing 420 n n 
C22 C23 PCW sing 421 n n 
C22 H221 PCW sing 422 n n 
C22 H222 PCW sing 423 n n 
C23 C24 PCW sing 424 n n 
C23 H231 PCW sing 425 n n 
C23 H232 PCW sing 426 n n 
C24 C25 PCW sing 427 n n 
C24 H241 PCW sing 428 n n 
C24 H242 PCW sing 429 n n 
C25 C26 PCW sing 430 n n 
C25 H251 PCW sing 431 n n 
C25 H252 PCW sing 432 n n 
C26 C27 PCW sing 433 n n 
C26 H261 PCW sing 434 n n 
C26 H262 PCW sing 435 n n 
C27 C28 PCW sing 436 n n 
C27 H271 PCW sing 437 n n 
C27 H272 PCW sing 438 n n 
C28 H281 PCW sing 439 n n 
C28 H282 PCW sing 440 n n 
C28 H283 PCW sing 441 n n 
C31 C32 PCW sing 442 n n 
C31 O2 PCW sing 443 n n 
C31 O31 PCW doub 444 n n 
C32 C33 PCW sing 445 n n 
C32 H321 PCW sing 446 n n 
C32 H322 PCW sing 447 n n 
C33 C34 PCW sing 448 n n 
C33 H331 PCW sing 449 n n 
C33 H332 PCW sing 450 n n 
C34 C35 PCW sing 451 n n 
C34 H341 PCW sing 452 n n 
C34 H342 PCW sing 453 n n 
C35 C36 PCW sing 454 n n 
C35 H351 PCW sing 455 n n 
C35 H352 PCW sing 456 n n 
C36 C37 PCW sing 457 n n 
C36 H361 PCW sing 458 n n 
C36 H362 PCW sing 459 n n 
C37 C38 PCW sing 460 n n 
C37 H371 PCW sing 461 n n 
C37 H372 PCW sing 462 n n 
C38 C39 PCW sing 463 n n 
C38 H381 PCW sing 464 n n 
C38 H382 PCW sing 465 n n 
C39 C40 PCW doub 466 z n 
C39 H39 PCW sing 467 n n 
C40 C41 PCW sing 468 n n 
C40 H40 PCW sing 469 n n 
C41 C42 PCW sing 470 n n 
C41 H411 PCW sing 471 n n 
C41 H412 PCW sing 472 n n 
C42 C43 PCW sing 473 n n 
C42 H421 PCW sing 474 n n 
C42 H422 PCW sing 475 n n 
C43 C44 PCW sing 476 n n 
C43 H431 PCW sing 477 n n 
C43 H432 PCW sing 478 n n 
C44 C45 PCW sing 479 n n 
C44 H441 PCW sing 480 n n 
C44 H442 PCW sing 481 n n 
C45 C46 PCW sing 482 n n 
C45 H451 PCW sing 483 n n 
C45 H452 PCW sing 484 n n 
C46 C47 PCW sing 485 n n 
C46 H461 PCW sing 486 n n 
C46 H462 PCW sing 487 n n 
C47 C48 PCW sing 488 n n 
C47 H471 PCW sing 489 n n 
C47 H472 PCW sing 490 n n 
C48 H481 PCW sing 491 n n 
C48 H482 PCW sing 492 n n 
C48 H483 PCW sing 493 n n 
O1P P PCW sing 494 n n 
O1P H1P PCW sing 495 n n 
O2P P PCW doub 496 n n 
O3P P PCW sing 497 n n 
O4P P PCW sing 498 n n 
#
_atom_sites.entry_id                     8U3C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VPN A 1 901 901 VPN VPN . 
D 3 PCW A 1 902 902 PCW PCW . 
E 4 3PH A 1 903 903 3PH 3PH . 
F 5 NA A 1 904 904 NA NA . 
G 6 HOH A 1 1001 1001 HOH HOH . 
G 6 HOH A 2 1002 1002 HOH HOH . 
G 6 HOH A 3 1003 1003 HOH HOH . 
G 6 HOH A 4 1004 1004 HOH HOH . 
G 6 HOH A 5 1005 1005 HOH HOH . 
G 6 HOH A 6 1006 1006 HOH HOH . 
G 6 HOH A 7 1007 1007 HOH HOH . 
H 6 HOH D 1 901 901 HOH HOH . 
H 6 HOH D 2 902 902 HOH HOH . 
H 6 HOH D 3 903 903 HOH HOH . 
H 6 HOH D 4 904 904 HOH HOH . 
H 6 HOH D 5 905 905 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . D 3 170.518 132.607 120.357 1 20 ? C1 PCW 902 A 1 
HETATM 2 C C2 PCW . . . D 3 171.649 133.045 119.432 1 20 ? C2 PCW 902 A 1 
HETATM 3 C C3 PCW . . . D 3 172.706 133.756 120.258 1 20 ? C3 PCW 902 A 1 
HETATM 4 C C4 PCW . . . D 3 167.608 129.615 122.471 1 20 ? C4 PCW 902 A 1 
HETATM 5 C C5 PCW . . . D 3 167.754 128.098 122.299 1 20 ? C5 PCW 902 A 1 
HETATM 6 C C6 PCW . . . D 3 165.765 127.547 123.581 1 20 ? C6 PCW 902 A 1 
HETATM 7 C C7 PCW . . . D 3 167.306 125.917 122.993 1 20 ? C7 PCW 902 A 1 
HETATM 8 C C8 PCW . . . D 3 167.897 127.516 124.613 1 20 ? C8 PCW 902 A 1 
HETATM 9 C C11 PCW . . . D 3 174.698 132.991 121.149 1 20 ? C11 PCW 902 A 1 
HETATM 10 C C12 PCW . . . D 3 175.511 132.22 120.114 1 20 ? C12 PCW 902 A 1 
HETATM 11 C C13 PCW . . . D 3 176.321 133.205 119.273 1 20 ? C13 PCW 902 A 1 
HETATM 12 C C14 PCW . . . D 3 177.039 132.432 118.166 1 20 ? C14 PCW 902 A 1 
HETATM 13 C C31 PCW . . . D 3 172.366 131.988 117.422 1 20 ? C31 PCW 902 A 1 
HETATM 14 C C32 PCW . . . D 3 173.801 131.945 116.864 1 20 ? C32 PCW 902 A 1 
HETATM 15 C C33 PCW . . . D 3 173.831 131.361 115.451 1 20 ? C33 PCW 902 A 1 
HETATM 16 C C34 PCW . . . D 3 173.473 132.445 114.438 1 20 ? C34 PCW 902 A 1 
HETATM 17 C C35 PCW . . . D 3 174.649 132.69 113.513 1 20 ? C35 PCW 902 A 1 
HETATM 18 C C36 PCW . . . D 3 174.234 133.709 112.458 1 20 ? C36 PCW 902 A 1 
HETATM 19 C C37 PCW . . . D 3 174.609 135.113 112.902 1 20 ? C37 PCW 902 A 1 
HETATM 20 C C38 PCW . . . D 3 173.525 136.071 112.415 1 20 ? C38 PCW 902 A 1 
HETATM 21 N N PCW . . . D 3 167.176 127.306 123.369 1 20 ? N PCW 902 A 1 
HETATM 22 O O2 PCW . . . D 3 172.185 131.905 118.82 1 20 ? O2 PCW 902 A 1 
HETATM 23 O O3 PCW . . . D 3 173.303 132.872 121.154 1 20 ? O3 PCW 902 A 1 
HETATM 24 O O11 PCW . . . D 3 175.233 133.693 121.929 1 20 ? O11 PCW 902 A 1 
HETATM 25 O O31 PCW . . . D 3 171.429 132.084 116.699 1 20 ? O31 PCW 902 A 1 
HETATM 26 O O1P PCW . . . D 3 169.472 132.063 123.29 1 20 ? O1P PCW 902 A 1 
HETATM 27 O O2P PCW . . . D 3 170.59 130.134 123.336 1 20 ? O2P PCW 902 A 1 
HETATM 28 O O3P PCW . . . D 3 170.933 131.56 121.208 1 20 ? O3P PCW 902 A 1 
HETATM 29 O O4P PCW . . . D 3 168.603 130.234 121.688 1 20 ? O4P PCW 902 A 1 
HETATM 30 P P PCW . . . D 3 169.898 130.997 122.394 1 20 ? P PCW 902 A 1 
HETATM 31 H H11 PCW . . . D 3 170.201 133.46 120.954 1 20 ? H11 PCW 902 A 1 
HETATM 32 H H12 PCW . . . D 3 169.705 132.262 119.738 1 20 ? H12 PCW 902 A 1 
HETATM 33 H H2 PCW . . . D 3 171.26 133.728 118.685 1 20 ? H2 PCW 902 A 1 
HETATM 34 H H31 PCW . . . D 3 172.246 134.571 120.803 1 20 ? H31 PCW 902 A 1 
HETATM 35 H H32 PCW . . . D 3 173.471 134.146 119.605 1 20 ? H32 PCW 902 A 1 
HETATM 36 H H41 PCW . . . D 3 167.725 129.908 123.509 1 20 ? H41 PCW 902 A 1 
HETATM 37 H H42 PCW . . . D 3 166.631 129.928 122.117 1 20 ? H42 PCW 902 A 1 
HETATM 38 H H51 PCW . . . D 3 167.277 127.813 121.374 1 20 ? H51 PCW 902 A 1 
HETATM 39 H H52 PCW . . . D 3 168.81 127.863 122.227 1 20 ? H52 PCW 902 A 1 
HETATM 40 H H61 PCW . . . D 3 165.506 127.228 124.587 1 20 ? H61 PCW 902 A 1 
HETATM 41 H H62 PCW . . . D 3 165.513 128.591 123.448 1 20 ? H62 PCW 902 A 1 
HETATM 42 H H63 PCW . . . D 3 165.197 126.949 122.884 1 20 ? H63 PCW 902 A 1 
HETATM 43 H H71 PCW . . . D 3 166.771 125.306 123.715 1 20 ? H71 PCW 902 A 1 
HETATM 44 H H72 PCW . . . D 3 166.884 125.764 122.008 1 20 ? H72 PCW 902 A 1 
HETATM 45 H H73 PCW . . . D 3 168.355 125.641 122.988 1 20 ? H73 PCW 902 A 1 
HETATM 46 H H81 PCW . . . D 3 167.595 128.464 125.051 1 20 ? H81 PCW 902 A 1 
HETATM 47 H H82 PCW . . . D 3 167.664 126.709 125.3 1 20 ? H82 PCW 902 A 1 
HETATM 48 H H83 PCW . . . D 3 168.964 127.532 124.414 1 20 ? H83 PCW 902 A 1 
HETATM 49 H H121 PCW . . . D 3 174.838 131.658 119.477 1 20 ? H121 PCW 902 A 1 
HETATM 50 H H122 PCW . . . D 3 176.186 131.531 120.619 1 20 ? H122 PCW 902 A 1 
HETATM 51 H H131 PCW . . . D 3 177.052 133.705 119.899 1 20 ? H131 PCW 902 A 1 
HETATM 52 H H132 PCW . . . D 3 175.653 133.936 118.833 1 20 ? H132 PCW 902 A 1 
HETATM 53 H H141 PCW . . . D 3 178.074 132.755 118.11 1 20 ? H141 PCW 902 A 1 
HETATM 54 H H142 PCW . . . D 3 176.996 131.371 118.382 1 20 ? H142 PCW 902 A 1 
HETATM 55 H H321 PCW . . . D 3 174.21 132.95 116.852 1 20 ? H321 PCW 902 A 1 
HETATM 56 H H322 PCW . . . D 3 174.408 131.319 117.504 1 20 ? H322 PCW 902 A 1 
HETATM 57 H H331 PCW . . . D 3 174.824 130.992 115.238 1 20 ? H331 PCW 902 A 1 
HETATM 58 H H332 PCW . . . D 3 173.12 130.538 115.374 1 20 ? H332 PCW 902 A 1 
HETATM 59 H H341 PCW . . . D 3 172.625 132.116 113.859 1 20 ? H341 PCW 902 A 1 
HETATM 60 H H342 PCW . . . D 3 173.223 133.367 114.954 1 20 ? H342 PCW 902 A 1 
HETATM 61 H H351 PCW . . . D 3 175.486 133.075 114.084 1 20 ? H351 PCW 902 A 1 
HETATM 62 H H352 PCW . . . D 3 174.928 131.759 113.032 1 20 ? H352 PCW 902 A 1 
HETATM 63 H H361 PCW . . . D 3 174.721 133.479 111.513 1 20 ? H361 PCW 902 A 1 
HETATM 64 H H362 PCW . . . D 3 173.161 133.672 112.331 1 20 ? H362 PCW 902 A 1 
HETATM 65 H H371 PCW . . . D 3 174.666 135.15 113.983 1 20 ? H371 PCW 902 A 1 
HETATM 66 H H372 PCW . . . D 3 175.565 135.39 112.471 1 20 ? H372 PCW 902 A 1 
HETATM 67 H H381 PCW . . . D 3 173.873 137.092 112.503 1 20 ? H381 PCW 902 A 1 
HETATM 68 H H382 PCW . . . D 3 173.281 135.851 111.38 1 20 ? H382 PCW 902 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           68 
#