data_8U3C # _model_server_result.job_id Zqqnh0pTQr0HhtcGQNuIUw _model_server_result.datetime_utc '2024-11-15 03:10:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 8U3C # _exptl.entry_id 8U3C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 704.998 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U3C _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 620 A GLY 643 1_555 F NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 F NA NA . A NA 904 1_555 G O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc3 F NA NA . A NA 904 1_555 B O GLY 620 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc4 F NA NA . A NA 904 1_555 H O HOH . D HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? # _chem_comp.formula 'C39 H77 O8 P' _chem_comp.formula_weight 704.998 _chem_comp.id 3PH _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 P 3PH sing 1 n n O13 H13 3PH sing 2 n n P O14 3PH sing 3 n n P O12 3PH doub 4 n n P O11 3PH sing 5 n n O11 C1 3PH sing 6 n n C1 C2 3PH sing 7 n n C1 H11 3PH sing 8 n n C1 H12 3PH sing 9 n n C2 O21 3PH sing 10 n n C2 C3 3PH sing 11 n n C2 H2 3PH sing 12 n n O21 C21 3PH sing 13 n n C21 O22 3PH doub 14 n n C21 C22 3PH sing 15 n n C22 C23 3PH sing 16 n n C22 H221 3PH sing 17 n n C22 H222 3PH sing 18 n n C23 C24 3PH sing 19 n n C23 H231 3PH sing 20 n n C23 H232 3PH sing 21 n n C24 C25 3PH sing 22 n n C24 H241 3PH sing 23 n n C24 H242 3PH sing 24 n n C25 C26 3PH sing 25 n n C25 H251 3PH sing 26 n n C25 H252 3PH sing 27 n n C26 C27 3PH sing 28 n n C26 H261 3PH sing 29 n n C26 H262 3PH sing 30 n n C27 C28 3PH sing 31 n n C27 H271 3PH sing 32 n n C27 H272 3PH sing 33 n n C28 C29 3PH sing 34 n n C28 H281 3PH sing 35 n n C28 H282 3PH sing 36 n n C29 C2A 3PH sing 37 n n C29 H291 3PH sing 38 n n C29 H292 3PH sing 39 n n C2A C2B 3PH sing 40 n n C2A H2A1 3PH sing 41 n n C2A H2A2 3PH sing 42 n n C2B C2C 3PH sing 43 n n C2B H2B1 3PH sing 44 n n C2B H2B2 3PH sing 45 n n C2C C2D 3PH sing 46 n n C2C H2C1 3PH sing 47 n n C2C H2C2 3PH sing 48 n n C2D C2E 3PH sing 49 n n C2D H2D1 3PH sing 50 n n C2D H2D2 3PH sing 51 n n C2E C2F 3PH sing 52 n n C2E H2E1 3PH sing 53 n n C2E H2E2 3PH sing 54 n n C2F C2G 3PH sing 55 n n C2F H2F1 3PH sing 56 n n C2F H2F2 3PH sing 57 n n C2G C2H 3PH sing 58 n n C2G H2G1 3PH sing 59 n n C2G H2G2 3PH sing 60 n n C2H C2I 3PH sing 61 n n C2H H2H1 3PH sing 62 n n C2H H2H2 3PH sing 63 n n C2I H2I1 3PH sing 64 n n C2I H2I2 3PH sing 65 n n C2I H2I3 3PH sing 66 n n C3 O31 3PH sing 67 n n C3 H31 3PH sing 68 n n C3 H32 3PH sing 69 n n O31 C31 3PH sing 70 n n C31 O32 3PH doub 71 n n C31 C32 3PH sing 72 n n C32 C33 3PH sing 73 n n C32 H321 3PH sing 74 n n C32 H322 3PH sing 75 n n C33 C34 3PH sing 76 n n C33 H331 3PH sing 77 n n C33 H332 3PH sing 78 n n C34 C35 3PH sing 79 n n C34 H341 3PH sing 80 n n C34 H342 3PH sing 81 n n C35 C36 3PH sing 82 n n C35 H351 3PH sing 83 n n C35 H352 3PH sing 84 n n C36 C37 3PH sing 85 n n C36 H361 3PH sing 86 n n C36 H362 3PH sing 87 n n C37 C38 3PH sing 88 n n C37 H371 3PH sing 89 n n C37 H372 3PH sing 90 n n C38 C39 3PH sing 91 n n C38 H381 3PH sing 92 n n C38 H382 3PH sing 93 n n C39 C3A 3PH sing 94 n n C39 H391 3PH sing 95 n n C39 H392 3PH sing 96 n n C3A C3B 3PH sing 97 n n C3A H3A1 3PH sing 98 n n C3A H3A2 3PH sing 99 n n C3B C3C 3PH sing 100 n n C3B H3B1 3PH sing 101 n n C3B H3B2 3PH sing 102 n n C3C C3D 3PH sing 103 n n C3C H3C1 3PH sing 104 n n C3C H3C2 3PH sing 105 n n C3D C3E 3PH sing 106 n n C3D H3D1 3PH sing 107 n n C3D H3D2 3PH sing 108 n n C3E C3F 3PH sing 109 n n C3E H3E1 3PH sing 110 n n C3E H3E2 3PH sing 111 n n C3F C3G 3PH sing 112 n n C3F H3F1 3PH sing 113 n n C3F H3F2 3PH sing 114 n n C3G C3H 3PH sing 115 n n C3G H3G1 3PH sing 116 n n C3G H3G2 3PH sing 117 n n C3H C3I 3PH sing 118 n n C3H H3H1 3PH sing 119 n n C3H H3H2 3PH sing 120 n n C3I H3I1 3PH sing 121 n n C3I H3I2 3PH sing 122 n n C3I H3I3 3PH sing 123 n n O14 H77 3PH sing 124 n n # _atom_sites.entry_id 8U3C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VPN A 1 901 901 VPN VPN . D 3 PCW A 1 902 902 PCW PCW . E 4 3PH A 1 903 903 3PH 3PH . F 5 NA A 1 904 904 NA NA . G 6 HOH A 1 1001 1001 HOH HOH . G 6 HOH A 2 1002 1002 HOH HOH . G 6 HOH A 3 1003 1003 HOH HOH . G 6 HOH A 4 1004 1004 HOH HOH . G 6 HOH A 5 1005 1005 HOH HOH . G 6 HOH A 6 1006 1006 HOH HOH . G 6 HOH A 7 1007 1007 HOH HOH . H 6 HOH D 1 901 901 HOH HOH . H 6 HOH D 2 902 902 HOH HOH . H 6 HOH D 3 903 903 HOH HOH . H 6 HOH D 4 904 904 HOH HOH . H 6 HOH D 5 905 905 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 3PH . . . E 4 149.827 113.055 102.416 1 47.45 ? O13 3PH 903 A 1 HETATM 2 P P 3PH . . . E 4 150.761 113.45 101.366 1 47.45 ? P 3PH 903 A 1 HETATM 3 O O14 3PH . . . E 4 149.982 114.442 100.626 1 47.45 ? O14 3PH 903 A 1 HETATM 4 O O12 3PH . . . E 4 151.159 112.167 100.415 1 47.45 ? O12 3PH 903 A 1 HETATM 5 O O11 3PH . . . E 4 152.114 114.123 102.019 1 47.45 ? O11 3PH 903 A 1 HETATM 6 C C1 3PH . . . E 4 153.043 113.275 102.62 1 47.45 ? C1 3PH 903 A 1 HETATM 7 C C2 3PH . . . E 4 153.626 113.92 103.872 1 47.45 ? C2 3PH 903 A 1 HETATM 8 O O21 3PH . . . E 4 152.588 114.2 104.779 1 47.45 ? O21 3PH 903 A 1 HETATM 9 C C21 3PH . . . E 4 152.886 114.336 106.145 1 47.45 ? C21 3PH 903 A 1 HETATM 10 O O22 3PH . . . E 4 153.821 113.785 106.621 1 47.45 ? O22 3PH 903 A 1 HETATM 11 C C22 3PH . . . E 4 151.954 115.182 107.021 1 47.45 ? C22 3PH 903 A 1 HETATM 12 C C23 3PH . . . E 4 152.583 115.675 108.331 1 47.45 ? C23 3PH 903 A 1 HETATM 13 C C24 3PH . . . E 4 152.315 117.167 108.503 1 47.45 ? C24 3PH 903 A 1 HETATM 14 C C3 3PH . . . E 4 154.342 115.205 103.477 1 47.45 ? C3 3PH 903 A 1 HETATM 15 O O31 3PH . . . E 4 155.528 115.304 104.211 1 47.45 ? O31 3PH 903 A 1 HETATM 16 C C31 3PH . . . E 4 155.688 116.524 104.863 1 47.45 ? C31 3PH 903 A 1 HETATM 17 O O32 3PH . . . E 4 155.895 117.502 104.229 1 47.45 ? O32 3PH 903 A 1 HETATM 18 C C32 3PH . . . E 4 155.575 116.571 106.386 1 47.45 ? C32 3PH 903 A 1 HETATM 19 C C33 3PH . . . E 4 156.154 117.861 106.942 1 47.45 ? C33 3PH 903 A 1 HETATM 20 C C34 3PH . . . E 4 156.194 117.797 108.458 1 47.45 ? C34 3PH 903 A 1 HETATM 21 C C35 3PH . . . E 4 156.877 119.063 108.952 1 47.45 ? C35 3PH 903 A 1 HETATM 22 C C36 3PH . . . E 4 155.844 120.169 109.135 1 47.45 ? C36 3PH 903 A 1 HETATM 23 C C37 3PH . . . E 4 156.238 121.031 110.327 1 47.45 ? C37 3PH 903 A 1 HETATM 24 C C38 3PH . . . E 4 156.56 122.451 109.892 1 47.45 ? C38 3PH 903 A 1 HETATM 25 C C39 3PH . . . E 4 156.447 123.311 111.138 1 47.45 ? C39 3PH 903 A 1 HETATM 26 C C3A 3PH . . . E 4 156.658 124.773 110.772 1 47.45 ? C3A 3PH 903 A 1 HETATM 27 C C3B 3PH . . . E 4 155.691 125.631 111.577 1 47.45 ? C3B 3PH 903 A 1 HETATM 28 C C3C 3PH . . . E 4 155.948 125.48 113.07 1 47.45 ? C3C 3PH 903 A 1 HETATM 29 H H11 3PH . . . E 4 153.844 113.069 101.92 1 47.45 ? H11 3PH 903 A 1 HETATM 30 H H12 3PH . . . E 4 152.557 112.347 102.894 1 47.45 ? H12 3PH 903 A 1 HETATM 31 H H2 3PH . . . E 4 154.347 113.229 104.284 1 47.45 ? H2 3PH 903 A 1 HETATM 32 H H221 3PH . . . E 4 151.083 114.586 107.265 1 47.45 ? H221 3PH 903 A 1 HETATM 33 H H222 3PH . . . E 4 151.629 116.04 106.448 1 47.45 ? H222 3PH 903 A 1 HETATM 34 H H231 3PH . . . E 4 153.657 115.538 108.346 1 47.45 ? H231 3PH 903 A 1 HETATM 35 H H232 3PH . . . E 4 152.142 115.137 109.162 1 47.45 ? H232 3PH 903 A 1 HETATM 36 H H241 3PH . . . E 4 152.287 117.41 109.56 1 47.45 ? H241 3PH 903 A 1 HETATM 37 H H242 3PH . . . E 4 151.369 117.429 108.041 1 47.45 ? H242 3PH 903 A 1 HETATM 38 H H31 3PH . . . E 4 153.699 116.048 103.683 1 47.45 ? H31 3PH 903 A 1 HETATM 39 H H32 3PH . . . E 4 154.576 115.184 102.419 1 47.45 ? H32 3PH 903 A 1 HETATM 40 H H321 3PH . . . E 4 154.532 116.54 106.648 1 47.45 ? H321 3PH 903 A 1 HETATM 41 H H322 3PH . . . E 4 156.085 115.722 106.823 1 47.45 ? H322 3PH 903 A 1 HETATM 42 H H331 3PH . . . E 4 157.166 117.981 106.581 1 47.45 ? H331 3PH 903 A 1 HETATM 43 H H332 3PH . . . E 4 155.53 118.696 106.642 1 47.45 ? H332 3PH 903 A 1 HETATM 44 H H341 3PH . . . E 4 156.766 116.931 108.766 1 47.45 ? H341 3PH 903 A 1 HETATM 45 H H342 3PH . . . E 4 155.184 117.726 108.843 1 47.45 ? H342 3PH 903 A 1 HETATM 46 H H351 3PH . . . E 4 157.372 118.846 109.89 1 47.45 ? H351 3PH 903 A 1 HETATM 47 H H352 3PH . . . E 4 157.613 119.384 108.224 1 47.45 ? H352 3PH 903 A 1 HETATM 48 H H361 3PH . . . E 4 155.804 120.778 108.242 1 47.45 ? H361 3PH 903 A 1 HETATM 49 H H362 3PH . . . E 4 154.866 119.736 109.308 1 47.45 ? H362 3PH 903 A 1 HETATM 50 H H371 3PH . . . E 4 155.416 121.057 111.032 1 47.45 ? H371 3PH 903 A 1 HETATM 51 H H372 3PH . . . E 4 157.111 120.62 110.821 1 47.45 ? H372 3PH 903 A 1 HETATM 52 H H381 3PH . . . E 4 157.57 122.502 109.5 1 47.45 ? H381 3PH 903 A 1 HETATM 53 H H382 3PH . . . E 4 155.85 122.783 109.143 1 47.45 ? H382 3PH 903 A 1 HETATM 54 H H391 3PH . . . E 4 157.193 123 111.862 1 47.45 ? H391 3PH 903 A 1 HETATM 55 H H392 3PH . . . E 4 155.458 123.18 111.562 1 47.45 ? H392 3PH 903 A 1 HETATM 56 H H3A1 3PH . . . E 4 156.465 124.907 109.714 1 47.45 ? H3A1 3PH 903 A 1 HETATM 57 H H3A2 3PH . . . E 4 157.676 125.072 110.992 1 47.45 ? H3A2 3PH 903 A 1 HETATM 58 H H3B1 3PH . . . E 4 155.826 126.672 111.304 1 47.45 ? H3B1 3PH 903 A 1 HETATM 59 H H3B2 3PH . . . E 4 154.676 125.323 111.353 1 47.45 ? H3B2 3PH 903 A 1 HETATM 60 H H3C1 3PH . . . E 4 155.497 126.316 113.594 1 47.45 ? H3C1 3PH 903 A 1 HETATM 61 H H3C2 3PH . . . E 4 155.52 124.551 113.439 1 47.45 ? H3C2 3PH 903 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 61 #