data_8U41
#
_model_server_result.job_id            VkGosaPRrFej-oDDztN9NQ 
_model_server_result.datetime_utc      '2024-11-15 08:31:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u41 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    8U41 
#
_exptl.entry_id    8U41 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8U41 
_cell.length_a            160.129 
_cell.length_b            160.129 
_cell.length_c            122.312 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 67 A HIS 47 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc2 A NE2 HIS 150 A HIS 130 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc3 A NE2 HIS 154 A HIS 134 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc4 A O MET 395 A MET 375 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc5 A O GLY 397 A GLY 377 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc6 A O VAL 399 A VAL 379 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? 
metalc ? metalc7 A OE2 GLU 401 A GLU 381 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc8 C FE FE . A FE 501 1_555 G NE2 HIS . A HIS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc9 C FE FE . A FE 501 1_555 K O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc10 C FE FE . A FE 501 1_555 K O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc11 B NE2 HIS 67 B HIS 47 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc12 B NE2 HIS 150 B HIS 130 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc13 B NE2 HIS 154 B HIS 134 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc14 B O GLN 394 B GLN 374 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc15 B O MET 395 B MET 375 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc16 B O GLY 397 B GLY 377 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc17 B O VAL 399 B VAL 379 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? 
metalc ? metalc18 B OE2 GLU 401 B GLU 381 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc19 H FE FE . B FE 501 1_555 J NE2 HIS . B HIS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc20 H FE FE . B FE 501 1_555 L O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc21 H FE FE . B FE 501 1_555 L O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8U41 
_atom_sites.fract_transf_matrix[1][1]    0.006245 
_atom_sites.fract_transf_matrix[1][2]    0.003606 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007211 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008176 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 501 461 FE FE . 
D 3 NA A 1 502 463 NA NA . 
E 4 FMT A 1 503 481 FMT FMT . 
F 4 FMT A 1 504 482 FMT FMT . 
G 5 HIS A 1 505 483 HIS HIS . 
H 2 FE B 1 501 462 FE FE . 
I 3 NA B 1 502 463 NA NA . 
J 5 HIS B 1 503 483 HIS HIS . 
K 6 HOH A 1 601 92 HOH HOH . 
K 6 HOH A 2 602 14 HOH HOH . 
K 6 HOH A 3 603 10 HOH HOH . 
K 6 HOH A 4 604 19 HOH HOH . 
K 6 HOH A 5 605 22 HOH HOH . 
K 6 HOH A 6 606 16 HOH HOH . 
K 6 HOH A 7 607 11 HOH HOH . 
K 6 HOH A 8 608 12 HOH HOH . 
K 6 HOH A 9 609 78 HOH HOH . 
K 6 HOH A 10 610 24 HOH HOH . 
K 6 HOH A 11 611 18 HOH HOH . 
K 6 HOH A 12 612 29 HOH HOH . 
K 6 HOH A 13 613 23 HOH HOH . 
K 6 HOH A 14 614 109 HOH HOH . 
K 6 HOH A 15 615 17 HOH HOH . 
K 6 HOH A 16 616 50 HOH HOH . 
K 6 HOH A 17 617 68 HOH HOH . 
K 6 HOH A 18 618 2 HOH HOH . 
K 6 HOH A 19 619 34 HOH HOH . 
K 6 HOH A 20 620 93 HOH HOH . 
K 6 HOH A 21 621 82 HOH HOH . 
K 6 HOH A 22 622 94 HOH HOH . 
K 6 HOH A 23 623 37 HOH HOH . 
K 6 HOH A 24 624 4 HOH HOH . 
K 6 HOH A 25 625 101 HOH HOH . 
K 6 HOH A 26 626 35 HOH HOH . 
K 6 HOH A 27 627 26 HOH HOH . 
K 6 HOH A 28 628 87 HOH HOH . 
K 6 HOH A 29 629 46 HOH HOH . 
K 6 HOH A 30 630 77 HOH HOH . 
K 6 HOH A 31 631 72 HOH HOH . 
K 6 HOH A 32 632 96 HOH HOH . 
K 6 HOH A 33 633 69 HOH HOH . 
K 6 HOH A 34 634 66 HOH HOH . 
K 6 HOH A 35 635 48 HOH HOH . 
K 6 HOH A 36 636 86 HOH HOH . 
K 6 HOH A 37 637 40 HOH HOH . 
K 6 HOH A 38 638 30 HOH HOH . 
K 6 HOH A 39 639 83 HOH HOH . 
K 6 HOH A 40 640 103 HOH HOH . 
K 6 HOH A 41 641 80 HOH HOH . 
K 6 HOH A 42 642 71 HOH HOH . 
K 6 HOH A 43 643 47 HOH HOH . 
K 6 HOH A 44 644 85 HOH HOH . 
K 6 HOH A 45 645 95 HOH HOH . 
K 6 HOH A 46 646 84 HOH HOH . 
K 6 HOH A 47 647 81 HOH HOH . 
K 6 HOH A 48 648 32 HOH HOH . 
K 6 HOH A 49 649 38 HOH HOH . 
K 6 HOH A 50 650 49 HOH HOH . 
K 6 HOH A 51 651 76 HOH HOH . 
K 6 HOH A 52 652 70 HOH HOH . 
L 6 HOH B 1 601 104 HOH HOH . 
L 6 HOH B 2 602 6 HOH HOH . 
L 6 HOH B 3 603 42 HOH HOH . 
L 6 HOH B 4 604 13 HOH HOH . 
L 6 HOH B 5 605 100 HOH HOH . 
L 6 HOH B 6 606 8 HOH HOH . 
L 6 HOH B 7 607 31 HOH HOH . 
L 6 HOH B 8 608 79 HOH HOH . 
L 6 HOH B 9 609 62 HOH HOH . 
L 6 HOH B 10 610 75 HOH HOH . 
L 6 HOH B 11 611 90 HOH HOH . 
L 6 HOH B 12 612 45 HOH HOH . 
L 6 HOH B 13 613 98 HOH HOH . 
L 6 HOH B 14 614 64 HOH HOH . 
L 6 HOH B 15 615 106 HOH HOH . 
L 6 HOH B 16 616 102 HOH HOH . 
L 6 HOH B 17 617 36 HOH HOH . 
L 6 HOH B 18 618 54 HOH HOH . 
L 6 HOH B 19 619 88 HOH HOH . 
L 6 HOH B 20 620 43 HOH HOH . 
L 6 HOH B 21 621 44 HOH HOH . 
L 6 HOH B 22 622 108 HOH HOH . 
L 6 HOH B 23 623 27 HOH HOH . 
L 6 HOH B 24 624 60 HOH HOH . 
L 6 HOH B 25 625 52 HOH HOH . 
L 6 HOH B 26 626 51 HOH HOH . 
L 6 HOH B 27 627 105 HOH HOH . 
L 6 HOH B 28 628 97 HOH HOH . 
L 6 HOH B 29 629 57 HOH HOH . 
L 6 HOH B 30 630 107 HOH HOH . 
L 6 HOH B 31 631 59 HOH HOH . 
L 6 HOH B 32 632 41 HOH HOH . 
L 6 HOH B 33 633 65 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -42.839 
_atom_site.Cartn_y               41.812 
_atom_site.Cartn_z               7.116 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        62.73 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#