data_8U41 # _model_server_result.job_id YMChWBqUvYGIEYe0Ducygg _model_server_result.datetime_utc '2024-11-15 08:19:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":503}' # _entry.id 8U41 # _exptl.entry_id 8U41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.162 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HISTIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8U41 _cell.length_a 160.129 _cell.length_b 160.129 _cell.length_c 122.312 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1 B,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 67 A HIS 47 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc2 A NE2 HIS 150 A HIS 130 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A NE2 HIS 154 A HIS 134 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 A O MET 395 A MET 375 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc5 A O GLY 397 A GLY 377 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc6 A O VAL 399 A VAL 379 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc7 A OE2 GLU 401 A GLU 381 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc8 C FE FE . A FE 501 1_555 G NE2 HIS . A HIS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc9 C FE FE . A FE 501 1_555 K O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc10 C FE FE . A FE 501 1_555 K O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc11 B NE2 HIS 67 B HIS 47 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc12 B NE2 HIS 150 B HIS 130 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 B NE2 HIS 154 B HIS 134 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc14 B O GLN 394 B GLN 374 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc15 B O MET 395 B MET 375 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc16 B O GLY 397 B GLY 377 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc17 B O VAL 399 B VAL 379 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc18 B OE2 GLU 401 B GLU 381 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc19 H FE FE . B FE 501 1_555 J NE2 HIS . B HIS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc20 H FE FE . B FE 501 1_555 L O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc21 H FE FE . B FE 501 1_555 L O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'C6 H10 N3 O2 1' _chem_comp.formula_weight 156.162 _chem_comp.id HIS _chem_comp.mon_nstd_flag y _chem_comp.name HISTIDINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HIS sing 133 n n N H HIS sing 134 n n N H2 HIS sing 135 n n CA C HIS sing 136 n n CA CB HIS sing 137 n n CA HA HIS sing 138 n n C O HIS doub 139 n n C OXT HIS sing 140 n n CB CG HIS sing 141 n n CB HB2 HIS sing 142 n n CB HB3 HIS sing 143 n n CG ND1 HIS sing 144 n y CG CD2 HIS doub 145 n y ND1 CE1 HIS doub 146 n y ND1 HD1 HIS sing 147 n n CD2 NE2 HIS sing 148 n y CD2 HD2 HIS sing 149 n n CE1 NE2 HIS sing 150 n y CE1 HE1 HIS sing 151 n n NE2 HE2 HIS sing 152 n n OXT HXT HIS sing 153 n n # _atom_sites.entry_id 8U41 _atom_sites.fract_transf_matrix[1][1] 0.006245 _atom_sites.fract_transf_matrix[1][2] 0.003606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 501 461 FE FE . D 3 NA A 1 502 463 NA NA . E 4 FMT A 1 503 481 FMT FMT . F 4 FMT A 1 504 482 FMT FMT . G 5 HIS A 1 505 483 HIS HIS . H 2 FE B 1 501 462 FE FE . I 3 NA B 1 502 463 NA NA . J 5 HIS B 1 503 483 HIS HIS . K 6 HOH A 1 601 92 HOH HOH . K 6 HOH A 2 602 14 HOH HOH . K 6 HOH A 3 603 10 HOH HOH . K 6 HOH A 4 604 19 HOH HOH . K 6 HOH A 5 605 22 HOH HOH . K 6 HOH A 6 606 16 HOH HOH . K 6 HOH A 7 607 11 HOH HOH . K 6 HOH A 8 608 12 HOH HOH . K 6 HOH A 9 609 78 HOH HOH . K 6 HOH A 10 610 24 HOH HOH . K 6 HOH A 11 611 18 HOH HOH . K 6 HOH A 12 612 29 HOH HOH . K 6 HOH A 13 613 23 HOH HOH . K 6 HOH A 14 614 109 HOH HOH . K 6 HOH A 15 615 17 HOH HOH . K 6 HOH A 16 616 50 HOH HOH . K 6 HOH A 17 617 68 HOH HOH . K 6 HOH A 18 618 2 HOH HOH . K 6 HOH A 19 619 34 HOH HOH . K 6 HOH A 20 620 93 HOH HOH . K 6 HOH A 21 621 82 HOH HOH . K 6 HOH A 22 622 94 HOH HOH . K 6 HOH A 23 623 37 HOH HOH . K 6 HOH A 24 624 4 HOH HOH . K 6 HOH A 25 625 101 HOH HOH . K 6 HOH A 26 626 35 HOH HOH . K 6 HOH A 27 627 26 HOH HOH . K 6 HOH A 28 628 87 HOH HOH . K 6 HOH A 29 629 46 HOH HOH . K 6 HOH A 30 630 77 HOH HOH . K 6 HOH A 31 631 72 HOH HOH . K 6 HOH A 32 632 96 HOH HOH . K 6 HOH A 33 633 69 HOH HOH . K 6 HOH A 34 634 66 HOH HOH . K 6 HOH A 35 635 48 HOH HOH . K 6 HOH A 36 636 86 HOH HOH . K 6 HOH A 37 637 40 HOH HOH . K 6 HOH A 38 638 30 HOH HOH . K 6 HOH A 39 639 83 HOH HOH . K 6 HOH A 40 640 103 HOH HOH . K 6 HOH A 41 641 80 HOH HOH . K 6 HOH A 42 642 71 HOH HOH . K 6 HOH A 43 643 47 HOH HOH . K 6 HOH A 44 644 85 HOH HOH . K 6 HOH A 45 645 95 HOH HOH . K 6 HOH A 46 646 84 HOH HOH . K 6 HOH A 47 647 81 HOH HOH . K 6 HOH A 48 648 32 HOH HOH . K 6 HOH A 49 649 38 HOH HOH . K 6 HOH A 50 650 49 HOH HOH . K 6 HOH A 51 651 76 HOH HOH . K 6 HOH A 52 652 70 HOH HOH . L 6 HOH B 1 601 104 HOH HOH . L 6 HOH B 2 602 6 HOH HOH . L 6 HOH B 3 603 42 HOH HOH . L 6 HOH B 4 604 13 HOH HOH . L 6 HOH B 5 605 100 HOH HOH . L 6 HOH B 6 606 8 HOH HOH . L 6 HOH B 7 607 31 HOH HOH . L 6 HOH B 8 608 79 HOH HOH . L 6 HOH B 9 609 62 HOH HOH . L 6 HOH B 10 610 75 HOH HOH . L 6 HOH B 11 611 90 HOH HOH . L 6 HOH B 12 612 45 HOH HOH . L 6 HOH B 13 613 98 HOH HOH . L 6 HOH B 14 614 64 HOH HOH . L 6 HOH B 15 615 106 HOH HOH . L 6 HOH B 16 616 102 HOH HOH . L 6 HOH B 17 617 36 HOH HOH . L 6 HOH B 18 618 54 HOH HOH . L 6 HOH B 19 619 88 HOH HOH . L 6 HOH B 20 620 43 HOH HOH . L 6 HOH B 21 621 44 HOH HOH . L 6 HOH B 22 622 108 HOH HOH . L 6 HOH B 23 623 27 HOH HOH . L 6 HOH B 24 624 60 HOH HOH . L 6 HOH B 25 625 52 HOH HOH . L 6 HOH B 26 626 51 HOH HOH . L 6 HOH B 27 627 105 HOH HOH . L 6 HOH B 28 628 97 HOH HOH . L 6 HOH B 29 629 57 HOH HOH . L 6 HOH B 30 630 107 HOH HOH . L 6 HOH B 31 631 59 HOH HOH . L 6 HOH B 32 632 41 HOH HOH . L 6 HOH B 33 633 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HIS . . . J 5 -41.774 41.564 -27.1 1 89.71 ? N HIS 503 B 1 HETATM 2 C CA HIS . . . J 5 -40.509 42.21 -27.536 1 90.05 ? CA HIS 503 B 1 HETATM 3 C C HIS . . . J 5 -40.854 43.388 -28.443 1 85.69 ? C HIS 503 B 1 HETATM 4 O O HIS . . . J 5 -41.84 43.256 -29.174 1 76.69 ? O HIS 503 B 1 HETATM 5 C CB HIS . . . J 5 -39.607 41.201 -28.247 1 76.28 ? CB HIS 503 B 1 HETATM 6 C CG HIS . . . J 5 -38.296 41.755 -28.682 1 83.31 ? CG HIS 503 B 1 HETATM 7 N ND1 HIS . . . J 5 -38.147 42.464 -29.85 1 92.71 ? ND1 HIS 503 B 1 HETATM 8 C CD2 HIS . . . J 5 -37.091 41.717 -28.115 1 79.79 ? CD2 HIS 503 B 1 HETATM 9 C CE1 HIS . . . J 5 -36.885 42.834 -29.977 1 87.56 ? CE1 HIS 503 B 1 HETATM 10 N NE2 HIS . . . J 5 -36.224 42.39 -28.932 1 91.83 ? NE2 HIS 503 B 1 HETATM 11 O OXT HIS . . . J 5 -40.156 44.391 -28.41 1 98.36 ? OXT HIS 503 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #