data_8U4P
#
_model_server_result.job_id            DxuQdnQzb8BRdFZ8CBwMMg 
_model_server_result.datetime_utc      '2024-10-11 00:31:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":702}' 
#
_entry.id    8U4P 
#
_exptl.entry_id    8U4P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              502.782 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Plerixafor 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U4P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             127 
_struct_conn.ptnr1_auth_asym_id             R 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              109 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             204 
_struct_conn.ptnr2_auth_asym_id             R 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              186 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.032 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C28 H54 N8' 
_chem_comp.formula_weight    502.782 
_chem_comp.id                VH6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Plerixafor 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "1,1'-[1,4-phenylenebis(methylene)]bis(1,4,8,11-tetraazacyclotetradecane);AMD3100" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 N01 VH6 sing 451 n n 
C03 C02 VH6 sing 452 n n 
N04 C03 VH6 sing 453 n n 
C05 N04 VH6 sing 454 n n 
C06 C05 VH6 sing 455 n n 
C07 C06 VH6 sing 456 n n 
N08 C07 VH6 sing 457 n n 
C10 C09 VH6 sing 458 n n 
N11 C10 VH6 sing 459 n n 
C12 N11 VH6 sing 460 n n 
C13 C12 VH6 sing 461 n n 
C14 C13 VH6 sing 462 n n 
C09 N08 VH6 sing 463 n n 
C15 N08 VH6 sing 464 n n 
C16 C15 VH6 sing 465 n n 
C17 C16 VH6 doub 466 n y 
C18 C17 VH6 sing 467 n y 
C19 C18 VH6 doub 468 n y 
C21 C20 VH6 doub 469 n y 
C20 C19 VH6 sing 470 n y 
C22 C19 VH6 sing 471 n n 
N23 C22 VH6 sing 472 n n 
C24 N23 VH6 sing 473 n n 
C25 C24 VH6 sing 474 n n 
C26 C25 VH6 sing 475 n n 
N27 C26 VH6 sing 476 n n 
C28 N27 VH6 sing 477 n n 
C29 C28 VH6 sing 478 n n 
N30 C29 VH6 sing 479 n n 
C31 N30 VH6 sing 480 n n 
C32 C31 VH6 sing 481 n n 
C33 C32 VH6 sing 482 n n 
N34 C33 VH6 sing 483 n n 
C35 N34 VH6 sing 484 n n 
C36 C35 VH6 sing 485 n n 
N01 C14 VH6 sing 486 n n 
C16 C21 VH6 sing 487 n y 
N23 C36 VH6 sing 488 n n 
C10 H102 VH6 sing 489 n n 
C10 H101 VH6 sing 490 n n 
C13 H132 VH6 sing 491 n n 
C13 H131 VH6 sing 492 n n 
C15 H151 VH6 sing 493 n n 
C15 H152 VH6 sing 494 n n 
C17 H171 VH6 sing 495 n n 
C20 H201 VH6 sing 496 n n 
C21 H211 VH6 sing 497 n n 
C22 H221 VH6 sing 498 n n 
C22 H222 VH6 sing 499 n n 
C24 H241 VH6 sing 500 n n 
C24 H242 VH6 sing 501 n n 
C26 H262 VH6 sing 502 n n 
C26 H261 VH6 sing 503 n n 
C28 H281 VH6 sing 504 n n 
C28 H282 VH6 sing 505 n n 
C02 H022 VH6 sing 506 n n 
C02 H021 VH6 sing 507 n n 
C03 H032 VH6 sing 508 n n 
C03 H031 VH6 sing 509 n n 
C05 H052 VH6 sing 510 n n 
C05 H051 VH6 sing 511 n n 
C06 H061 VH6 sing 512 n n 
C06 H062 VH6 sing 513 n n 
C07 H072 VH6 sing 514 n n 
C07 H071 VH6 sing 515 n n 
C09 H091 VH6 sing 516 n n 
C09 H092 VH6 sing 517 n n 
C12 H122 VH6 sing 518 n n 
C12 H121 VH6 sing 519 n n 
C14 H141 VH6 sing 520 n n 
C14 H142 VH6 sing 521 n n 
C18 H181 VH6 sing 522 n n 
C25 H252 VH6 sing 523 n n 
C25 H251 VH6 sing 524 n n 
C29 H292 VH6 sing 525 n n 
C29 H291 VH6 sing 526 n n 
C31 H312 VH6 sing 527 n n 
C31 H311 VH6 sing 528 n n 
C32 H321 VH6 sing 529 n n 
C32 H322 VH6 sing 530 n n 
C33 H332 VH6 sing 531 n n 
C33 H331 VH6 sing 532 n n 
C35 H352 VH6 sing 533 n n 
C35 H351 VH6 sing 534 n n 
C36 H361 VH6 sing 535 n n 
C36 H362 VH6 sing 536 n n 
N01 H011 VH6 sing 537 n n 
N04 H2 VH6 sing 538 n n 
N11 H111 VH6 sing 539 n n 
N27 H6 VH6 sing 540 n n 
N30 H301 VH6 sing 541 n n 
N34 H8 VH6 sing 542 n n 
#
_atom_sites.entry_id                     8U4P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 CLR R 1 701 401 CLR CLR . 
F 6 VH6 R 1 702 501 VH6 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 VH6 . . . F 6 131.568 127.873 174.239 1 73.44 ? C10 VH6 702 R 1 
HETATM 2 C C13 VH6 . . . F 6 130.289 127.344 176.982 1 73.44 ? C13 VH6 702 R 1 
HETATM 3 C C15 VH6 . . . F 6 129.899 127.857 171.704 1 73.44 ? C15 VH6 702 R 1 
HETATM 4 C C17 VH6 . . . F 6 131.108 129.509 170.144 1 73.44 ? C17 VH6 702 R 1 
HETATM 5 C C20 VH6 . . . F 6 129.155 129.48 168.268 1 73.44 ? C20 VH6 702 R 1 
HETATM 6 C C21 VH6 . . . F 6 129.046 128.721 169.423 1 73.44 ? C21 VH6 702 R 1 
HETATM 7 C C22 VH6 . . . F 6 130.396 131.15 166.703 1 73.44 ? C22 VH6 702 R 1 
HETATM 8 C C24 VH6 . . . F 6 128.601 132.532 165.531 1 73.44 ? C24 VH6 702 R 1 
HETATM 9 C C26 VH6 . . . F 6 127.628 134.477 164.031 1 73.44 ? C26 VH6 702 R 1 
HETATM 10 C C28 VH6 . . . F 6 129.662 134.339 162.583 1 73.44 ? C28 VH6 702 R 1 
HETATM 11 C C02 VH6 . . . F 6 126.763 126.756 175.557 1 73.44 ? C02 VH6 702 R 1 
HETATM 12 C C03 VH6 . . . F 6 126.394 128.266 175.419 1 73.44 ? C03 VH6 702 R 1 
HETATM 13 C C05 VH6 . . . F 6 125.909 129.647 173.404 1 73.44 ? C05 VH6 702 R 1 
HETATM 14 C C06 VH6 . . . F 6 126.996 129.199 172.386 1 73.44 ? C06 VH6 702 R 1 
HETATM 15 C C07 VH6 . . . F 6 128.452 129.659 172.71 1 73.44 ? C07 VH6 702 R 1 
HETATM 16 C C09 VH6 . . . F 6 130.614 128.993 173.756 1 73.44 ? C09 VH6 702 R 1 
HETATM 17 C C12 VH6 . . . F 6 130.922 126.301 176.036 1 73.44 ? C12 VH6 702 R 1 
HETATM 18 C C14 VH6 . . . F 6 128.789 127.619 176.725 1 73.44 ? C14 VH6 702 R 1 
HETATM 19 C C16 VH6 . . . F 6 130.019 128.696 170.432 1 73.44 ? C16 VH6 702 R 1 
HETATM 20 C C18 VH6 . . . F 6 131.219 130.268 168.985 1 73.44 ? C18 VH6 702 R 1 
HETATM 21 C C19 VH6 . . . F 6 130.253 130.305 167.976 1 73.44 ? C19 VH6 702 R 1 
HETATM 22 C C25 VH6 . . . F 6 127.868 133.895 165.456 1 73.44 ? C25 VH6 702 R 1 
HETATM 23 C C29 VH6 . . . F 6 131.118 134.871 162.51 1 73.44 ? C29 VH6 702 R 1 
HETATM 24 C C31 VH6 . . . F 6 133.101 135.247 163.932 1 73.44 ? C31 VH6 702 R 1 
HETATM 25 C C32 VH6 . . . F 6 133.583 135.434 165.38 1 73.44 ? C32 VH6 702 R 1 
HETATM 26 C C33 VH6 . . . F 6 134.037 134.14 166.087 1 73.44 ? C33 VH6 702 R 1 
HETATM 27 C C35 VH6 . . . F 6 131.918 133.419 167.219 1 73.44 ? C35 VH6 702 R 1 
HETATM 28 C C36 VH6 . . . F 6 130.509 133.669 166.587 1 73.44 ? C36 VH6 702 R 1 
HETATM 29 N N01 VH6 . . . F 6 128.169 126.54 175.928 1 73.44 ? N01 VH6 702 R 1 
HETATM 30 N N04 VH6 . . . F 6 125.472 128.545 174.299 1 73.44 ? N04 VH6 702 R 1 
HETATM 31 N N08 VH6 . . . F 6 129.424 128.53 172.973 1 73.44 ? N08 VH6 702 R 1 
HETATM 32 N N11 VH6 . . . F 6 130.849 126.63 174.6 1 73.44 ? N11 VH6 702 R 1 
HETATM 33 N N23 VH6 . . . F 6 129.594 132.459 166.689 1 73.44 ? N23 VH6 702 R 1 
HETATM 34 N N27 VH6 . . . F 6 128.819 135.15 163.479 1 73.44 ? N27 VH6 702 R 1 
HETATM 35 N N30 VH6 . . . F 6 131.626 135.294 163.831 1 73.44 ? N30 VH6 702 R 1 
HETATM 36 N N34 VH6 . . . F 6 132.963 133.141 166.203 1 73.44 ? N34 VH6 702 R 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           36 
#